View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493_low_50 (Length: 366)
Name: NF0493_low_50
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_50 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 53 - 355
Target Start/End: Original strand, 42631931 - 42632233
Alignment:
| Q |
53 |
tcaattggccggcgctttgttggttatgttatggtgttggtaggcctgctgcttctgttgtgttgtgggttctctttcctgttaaattgtgtacaatatt |
152 |
Q |
| |
|
|||||||||||| | |||||||| | |||||||||||||||||||||||||| | ||||||||||||||||| ||||||| |||||||||||| ||| |
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|
| T |
42631931 |
tcaattggccggtgttttgttgggtcggttatggtgttggtaggcctgctgctacggttgtgttgtgggttctgtttcctgctaaattgtgtaccgtatc |
42632030 |
T |
|
| Q |
153 |
tttacggcccnnnnnnnatcttctgtttgttttgtgagctttatagtgtgtcttgttgttcagaattttatcaaacctgcttctgttttgctctaaatac |
252 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||| |
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|
| T |
42632031 |
tttatggccctttttgtatcttctgtttgttttgtgagctttttagtgtgtcttgttgttctgaattttatcaaacctgcttctattttgctctaagtac |
42632130 |
T |
|
| Q |
253 |
gnnnnnnnnnacaggatattgattatggtcagcttctggtattgatggtattttctaaaacagcaagtgtggtaaggaatgagtgcaagcactgttggcc |
352 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
42632131 |
gtattttattacaggatattgattatggtcagcttctggtattgatgggatctgctaaaacagcaagtgtggtaaggaatgagtgcaagcactgctggcc |
42632230 |
T |
|
| Q |
353 |
tat |
355 |
Q |
| |
|
||| |
|
|
| T |
42632231 |
tat |
42632233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 168; Significance: 6e-90; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 53 - 358
Target Start/End: Complemental strand, 6760120 - 6759817
Alignment:
| Q |
53 |
tcaattggccggcgctttgttggttatgttatggtgttggtaggcctgctgcttctgttgtgttgtgggttctctttcctgttaaattgtgtacaatatt |
152 |
Q |
| |
|
||||||||| || |||||||||||| ||||||||||||||||||| || |||| ||||||||||||||||| | |||||||||||||||||||| |||| |
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|
| T |
6760120 |
tcaattggctggtgctttgttggttctgttatggtgttggtaggcatgttgctactgttgtgttgtgggttttgtttcctgttaaattgtgtaccgtatt |
6760021 |
T |
|
| Q |
153 |
tttacggcccnnnnnnnatcttctgtttgttttgtgagctttatagtgtgtcttgttgttcagaattttatcaaacctgcttctgttttgctctaaatac |
252 |
Q |
| |
|
|||||||| | |||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
6760020 |
tttacggcgctttttt-atcttctgtttgttttgtgaactttttagtgtgtcttgttgttctgaattttatcaaacatgcttctgttttgctcgaaatac |
6759922 |
T |
|
| Q |
253 |
gnnnnnnnnnacaggatattgattatggtcagcttctggtattgatggtattttctaaaacagcaagtgtggtaaggaatgagtgcaagcactgttggcc |
352 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
6759921 |
gtttttttt-acaggatattgattatggtcagcttctggtattgatgggatctgctaaaacagcaagtgtggtaaggaatgagtgcaagcactgctggcc |
6759823 |
T |
|
| Q |
353 |
tatgct |
358 |
Q |
| |
|
|||||| |
|
|
| T |
6759822 |
tatgct |
6759817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 53 - 358
Target Start/End: Original strand, 6456728 - 6457031
Alignment:
| Q |
53 |
tcaattggccggcgctttgttggttatgttatggtgttggtaggcctgctgcttctgttgtgttgtgggttctctttcctgttaaattgtgtacaatatt |
152 |
Q |
| |
|
||||||||| || |||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| | |||||||||||||||||| | |||| |
|
|
| T |
6456728 |
tcaattggctggtgctttgttggttctgttatggtgttggtaggcatgctgctactgttgtgttgtgggttttgtttcctgttaaattgtgtgccgtatt |
6456827 |
T |
|
| Q |
153 |
tttacggcccnnnnnnnatcttctgtttgttttgtgagctttatagtgtgtcttgttgttcagaattttatcaaacctgcttctgttttgctctaaatac |
252 |
Q |
| |
|
|||||||| | |||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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|
| T |
6456828 |
tttacggcgc-ttttttatcttctgtttgttttgtgaactttttagtgtgtcttgttgttctgaattttatcaaacatgcttctgttttgctctaaatac |
6456926 |
T |
|
| Q |
253 |
gnnnnnnnnnacaggatattgattatggtcagcttctggtattgatggtattttctaaaacagcaagtgtggtaaggaatgagtgcaagcactgttggcc |
352 |
Q |
| |
|
| ||||||||||||||||||||| |||||||| ||||||| || | |||||||||||||||||||||||||| ||||||||||||| ||||| |
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|
| T |
6456927 |
g-ttttttttacaggatattgattatggtcaacttctggtgttgatgggatctgctaaaacagcaagtgtggtaaggaataagtgcaagcactgctggcc |
6457025 |
T |
|
| Q |
353 |
tatgct |
358 |
Q |
| |
|
|||||| |
|
|
| T |
6457026 |
tatgct |
6457031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 53 - 358
Target Start/End: Complemental strand, 49963788 - 49963483
Alignment:
| Q |
53 |
tcaattggccggcgctttgttggttatgttatggtgttggtaggcctgctgcttctgttgtgttgtgggttctctttcctgttaaattgtgtacaatatt |
152 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||| || |||| |||||||| |||||||||| ||||||||||||||||||| |||| |
|
|
| T |
49963788 |
tcaattggccgacgttttgttggttatgttatggtgttggtaggcatgttgctactgttgtgctgtgggttctatttcctgttaaattgtgtatcgtatt |
49963689 |
T |
|
| Q |
153 |
tttacggcccnnnnnnnatcttctgtttgttttgtgagctttatagtgtgtcttgttgttcagaattttatcaaacctgcttctgttttgctctaaatac |
252 |
Q |
| |
|
|||||| |||||||||||||||||| || || ||||||| |||||||||| ||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
49963688 |
tttacgaatttttttttatcttctgtttgttttgtaagaattttagtgtgccttgttgttctgaattttatcaaatatgcttctgttttcctctaaatac |
49963589 |
T |
|
| Q |
253 |
gnnnnnnnnnacaggatattgattatggtcagcttctggtattgatggtattttctaaaacagcaagtgtggtaaggaatgagtgcaagcactgttggcc |
352 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||| || | |||||||| | ||||||||||||||||||||||||||||| ||||| |
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|
| T |
49963588 |
gtttttcattacaggatattgattatggtcagcttctggtactgatgggatctgctaaaacaacgagtgtggtaaggaatgagtgcaagcactgctggcc |
49963489 |
T |
|
| Q |
353 |
tatgct |
358 |
Q |
| |
|
|||||| |
|
|
| T |
49963488 |
tatgct |
49963483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 344
Target Start/End: Original strand, 42104063 - 42104105
Alignment:
| Q |
302 |
attttctaaaacagcaagtgtggtaaggaatgagtgcaagcac |
344 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42104063 |
atttgctaaaacagaaagtgtggtaaggaatgagtgcaagcac |
42104105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 53 - 358
Target Start/End: Original strand, 38175192 - 38175496
Alignment:
| Q |
53 |
tcaattggccggcgctttgttggttatgttatggtgttggtaggcctgctgcttctgttgtgttgtgggttctctttcctgttaaattgtgtacaatatt |
152 |
Q |
| |
|
||||||| ||| || |||||||||||||||||||||||||||||||| ||| | |||||||||| |||||| ||| |||||||||||||||| |||| |
|
|
| T |
38175192 |
tcaattgaccgacgttttgttggttatgttatggtgttggtaggcctactgttattgttgtgttgcaggttctattttctgttaaattgtgtaccgtatt |
38175291 |
T |
|
| Q |
153 |
tttacggcccnnnnnnnatcttctgtttgttttgtgagctttatagtgtgtcttgttgttcagaattttatcaaacctgcttctgttttgctctaaatac |
252 |
Q |
| |
|
|||||| ||| ||||| ||||||||||||||| ||| ||||||| |||||||||| ||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
38175292 |
tttacgaccctctttttatctt-tgtttgttttgtgagttttttagtgtgccttgttgttctgaattttatcaaatatgcttctgttttcctctaaatac |
38175390 |
T |
|
| Q |
253 |
gnnnnnnnnnacaggatattgattatggtcagcttctggtattgatggtattttctaaaacagcaagtgtggtaaggaatgagtgcaagcactgttggcc |
352 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||| || | |||||||| | ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38175391 |
gtttttcattacaggatattgattatggtcagcttctggtactgatgggatctgctaaaacatcgagtgtggtaaggaatgagtgcaagcactgctggcc |
38175490 |
T |
|
| Q |
353 |
tatgct |
358 |
Q |
| |
|
|||||| |
|
|
| T |
38175491 |
tatgct |
38175496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 68 - 358
Target Start/End: Original strand, 15229056 - 15229346
Alignment:
| Q |
68 |
tttgttggttatgttatggtgttggtaggcctgctgcttctgttgtgttgtgggttctctttcctgttaaattgtgtacaatatttttacggcccnnnnn |
167 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||| | |||| | ||| | |||||||||||| ||||||||| ||| |
|
|
| T |
15229056 |
tttgctggttatgttatggtgttggtaggcctgctgctactgttgtgttgcagattctatgtccagataaattgtgtaccgaatttttacgacccttttt |
15229155 |
T |
|
| Q |
168 |
nnatcttctgtttgttttgtgagctttatagtgtgtcttgttgttcagaattttatcaaacctgcttctgttttgctctaaatacgnnnnnnnnnacagg |
267 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||||| |||||||||| ||||||||||||| ||||||||||||||||| |||||| ||||| |
|
|
| T |
15229156 |
ttatcttcagtttgttttctgagctttttagtgtgccttgttgttctgaattttatcaaatatgcttctgttttgctcttaatacgttttttattacagg |
15229255 |
T |
|
| Q |
268 |
atattgattatggtcagcttctggtattgatggtattttctaaaacagcaagtgtggtaaggaatgagtgcaagcactgttggcctatgct |
358 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| || | |||||||||||||||||||||||||||||||||||| || | ||||||||| |
|
|
| T |
15229256 |
atattgattatggtcagcttttggtactgatggcatatgataaaacagcaagtgtggtaaggaatgagtgcaagcaatgcttgcctatgct |
15229346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 66 - 253
Target Start/End: Original strand, 39676377 - 39676564
Alignment:
| Q |
66 |
gctttgttggttatgttatggtgttggtaggcctgctgcttctgttgtgttgtgggttctctttcctgttaaattgtgtacaatatttttacggcccnnn |
165 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| |||||| ||||||||||||| ||||| || ||| | |
|
|
| T |
39676377 |
gctttgttggttctgttatggtgttggtaggcctactgctactgttgtgttgtgggttctgtttcctattaaattgtgtaccgtatttctagggctcttt |
39676476 |
T |
|
| Q |
166 |
nnnnatcttctgtttgttttgtgagctttatagtgtgtcttgttgttcagaattttatcaaacctgcttctgttttgctctaaatacg |
253 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
39676477 |
ttttatcttatgtttgttttgtgagctttttagtgtgtcttgttgttctgaattttatcaaacttgcttcggttttgctctaaatacg |
39676564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 344
Target Start/End: Original strand, 22027189 - 22027226
Alignment:
| Q |
307 |
ctaaaacagcaagtgtggtaaggaatgagtgcaagcac |
344 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22027189 |
ctaaaacaaaaagtgtggtaaggaatgagtgcaagcac |
22027226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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