View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_52 (Length: 354)
Name: NF0493_low_52
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 25514249 - 25514545
Alignment:
| Q |
1 |
cagtagctttctgtttataaattaattagtcaatgcctattttgttgcttttacagtgattttgagatatcaaaacactagcaagttctgttatattagc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25514249 |
cagtagctttctgtttataaattaattagtcaaagcctattttgttgcttttagaattattttgagatatcaaaacactagcaagttctgttatattagt |
25514348 |
T |
|
| Q |
101 |
tttcaaatttaaattacatttccaactcatttctatagcatgtacttatggctaataatattactagcactttgaaatgtcgtttctgtcgtatggtgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25514349 |
tttcaaatttaaattacatttccaactcatttctgcagcatgtacttgtggctaataatattactagcactttgaaatgtggtttctgtcgtatggtgtg |
25514448 |
T |
|
| Q |
201 |
ataagttctgtattcaaatgtattttcccaatcgttgtgataatttctgttaagaactttgcttacaccattgtctatgttcgcaaatgtagtgtta |
297 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25514449 |
ataaattctgtattcaaatgtattttcccaatcattgtgataatctctgttaagaactttgcttacatcattgtctatgttcgcaaatgtagtgtta |
25514545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 25521111 - 25520830
Alignment:
| Q |
1 |
cagtagctttctgtttataaattaattagtcaatgcctattttgttgcttttacagtgattttgagatatcaaaacactagcaagttctgttatattagc |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25521111 |
cagtagctttctgtttataaattaattagtcaaagcctattttgttgcttttagaattattttgagatatcaaaacactagcaagttctgttatattagt |
25521012 |
T |
|
| Q |
101 |
tttcaaatttaaattacatttccaactcatttctatagcatgtacttatggctaataatattactagcactttgaaatgtcgtttctgtcgtatggtgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25521011 |
tttcaaatttaaattacatttccaactcatttct---------------ggctaataatattactagcactttgaaatgtgatttctgtcgtatggtgtg |
25520927 |
T |
|
| Q |
201 |
ataagttctgtattcaaatgtattttcccaatcgttgtgataatttctgttaagaactttgcttacaccattgtctatgttcgcaaatgtagtgtta |
297 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25520926 |
ataagttatgtattcaaatgtattttcccaatcattgtgataatctctgttaagaactttgcttacatcattgtctatgttcgcaaatgtagtgtta |
25520830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 42800080 - 42799862
Alignment:
| Q |
10 |
tctgtttataaattaattagtcaatgcctattttgttgcttttacagtgattttgagatatcaaaacactagcaagttctgttatattagctttcaaatt |
109 |
Q |
| |
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||||||| | |||||||||||||| || ||| |||||||||||||| |||||||||||||| |||||||||| || |||||||||||||| ||||||||| |
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| T |
42800080 |
tctgtttctgaattaattagtcaaagcttatcttgttgcttttacaatgattttgagatattaaaacactagtaatttctgttatattagttttcaaatt |
42799981 |
T |
|
| Q |
110 |
taaattacatttccaactcatttctatagcatgtacttatggctaataatattactagcactttgaaatgtcgtttctgtcgtatggtgtgataagttct |
209 |
Q |
| |
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|| |||||||||||||||||||| | ||||||||||| |||| ||||||||||||||||||||||||| ||||||||| |||||||||||||| | |
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| T |
42799980 |
tatattacatttccaactcatttgtgcagcatgtacttgtggc---taatattactagcactttgaaatgtggtttctgtcctatggtgtgataag--cg |
42799886 |
T |
|
| Q |
210 |
gtattcaaatgtattttcccaatc |
233 |
Q |
| |
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||||||||||||||||||| |||| |
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| T |
42799885 |
gtattcaaatgtattttccaaatc |
42799862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 169 - 297
Target Start/End: Complemental strand, 42803098 - 42802972
Alignment:
| Q |
169 |
actttgaaatgtcgtttctgtcgtatggtgtgataagttctgtattcaaatgtattttcccaatcgttgtgataatttctgttaagaactttgcttacac |
268 |
Q |
| |
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||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| || |||||| ||||||||||||||||| |||||| |
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| T |
42803098 |
actttgaaatgcggtttctgtcctatggtgtgataagtg--gtattcaaatgtattttcccaatcattatgataagttctgttaagaactttgtttacac |
42803001 |
T |
|
| Q |
269 |
cattgtctatgttcgcaaatgtagtgtta |
297 |
Q |
| |
|
||||||||||||| |||||||||||||| |
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| T |
42803000 |
cattgtctatgttttcaaatgtagtgtta |
42802972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 42803181 - 42803102
Alignment:
| Q |
4 |
tagctttctgtttataaattaattagtcaatgcctattttgttgcttttacagtgattttgagatatcaaaacactagca |
83 |
Q |
| |
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||||||||||||||| |||||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
42803181 |
tagctttctgtttatgaattaattagtcgaagcctattttaatgcttttacaatgattttgagatatcaaaacactagca |
42803102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 3 - 252
Target Start/End: Complemental strand, 27906951 - 27906708
Alignment:
| Q |
3 |
gtagctttctgtttataaattaattagtcaatgcctattttgttgcttttacagtgattttgagatatcaaaacactagcaagttctgttatattagctt |
102 |
Q |
| |
|
||||||||| |||||| |||||||||||| | ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
27906951 |
gtagctttccgtttatgaattaattagtcgaagcctattttgttgcttttacaatgattttgaggtatcaaaacactagcaagttctgttatattagttt |
27906852 |
T |
|
| Q |
103 |
tcaaatttaaattacatttccaactcatttctatagcatgtacttatggctaataatattactagcactttgaaatgtcgtttctgtcgtatggtgtgat |
202 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||||||| ||||||||| | |||| |||| |
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|
| T |
27906851 |
tcaaatttatattacatttccaactcatttctgcagcatgtgcttgtggctaata----tactagcactttgaaatgtggtttctgtcctgtggtatgat |
27906756 |
T |
|
| Q |
203 |
aagttctgtattcaaatgtattttcccaatcgttgtgataatttctgtta |
252 |
Q |
| |
|
|||| ||||||||||||||||| |||||| ||||||||| |||||||| |
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| T |
27906755 |
aagt--ggtattcaaatgtattttaccaatcattgtgataagttctgtta |
27906708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 3 - 189
Target Start/End: Original strand, 7387613 - 7387799
Alignment:
| Q |
3 |
gtagctttctgtttataaattaattagtcaatgcctattttgttgcttttacagtgattttgagatatcaaaacactagcaagttctgttatattagctt |
102 |
Q |
| |
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||||||||| |||||| |||| ||||||| | ||||||||||||||||||||| |||||||||| |||||| |||||||||||||||| |||||||| || |
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| T |
7387613 |
gtagctttccgtttatgaattgattagtcgaagcctattttgttgcttttacaatgattttgaggtatcaatacactagcaagttctgctatattagttt |
7387712 |
T |
|
| Q |
103 |
tcaaatttaaattacatttccaactcatttctatagcatgtacttatggctaataatattactagcactttgaaatgtcgtttctgt |
189 |
Q |
| |
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||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |||||||| |
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| T |
7387713 |
tcaaatttatattacatttccaactcatttctgcagcatgtacttgtggctaataatagtactagcactttgaaatgtggtttctgt |
7387799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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