View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_53 (Length: 352)
Name: NF0493_low_53
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 81 - 259
Target Start/End: Complemental strand, 8005847 - 8005671
Alignment:
| Q |
81 |
gaactggaaaattaagttggtgatgata-taattgggaataacattagaacgacggagaagtgaattgctccnnnnnnntccagttactgcag-nnnnnn |
178 |
Q |
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| T |
8005847 |
gaactggaaaattaagttggtggtgaaactaattgggaataacattagaacgacggagaagtgaattgctccaaaaaaaaccagttactgcagtttttat |
8005748 |
T |
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| Q |
179 |
nnncaattt---atgatcggttttccccagtgtgacggtggatcgacaaatttcattttcataaacaatggcgagtgaattaat |
259 |
Q |
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| T |
8005747 |
tttcaatttataatgatcggttttccccaatgtgacg-------gacaaatttcattttcataaacaatggcgagtgaattaat |
8005671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 9849235 - 9849178
Alignment:
| Q |
182 |
caatttatgatcggttttccccagtgtgacggtggatcgacaaatttcattttcataa |
239 |
Q |
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| T |
9849235 |
caatttattattggttttcaccaatgtatcggtggatcgacaaatttcattttcataa |
9849178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 9849355 - 9849306
Alignment:
| Q |
81 |
gaactggaaaattaagttggtgatgatataattgggaataacattagaac |
130 |
Q |
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| T |
9849355 |
gaactggaaaattaagttgttggtgaactaattgggaattacattagaac |
9849306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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