View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0493_low_54 (Length: 351)
Name: NF0493_low_54
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_54 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 29 - 340
Target Start/End: Complemental strand, 15849913 - 15849602
Alignment:
| Q |
29 |
aaaaaagttacaagtgtttacatgcattgcaaaattctggggttgaacaaatctttgatgctgaaaaatgggtccaagcgcatcgtcatgaattcaacaa |
128 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||| || |||| ||||| ||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
15849913 |
aaaaaagttacaagtgtttacttgcattgaaaaattctggggttaaagaaatatttgaagctgaaaaatgggtccaagagcatcgtcatgaattccacaa |
15849814 |
T |
|
| Q |
129 |
ggaggtttatggcccagttttagtcgaggtatacatatatatgtttaaattattatgttttcatagcctttttgtcttcctacatggtccgttaaattgt |
228 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
15849813 |
ggaggtttatggcccagttttagttgaggtatacatatatatgtttaaatcattatgttttcatagccttttggtcttcctacttggtccgttaaattgt |
15849714 |
T |
|
| Q |
229 |
tgattgaattgacaggtaaatgtcccagatcagtctcatgctaaatatctagagggtcaagttgcttggtacacttggaaggtagtcctagacattttag |
328 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
15849713 |
cgattgaattgataggtaaatgtcccagatcagtctcatgctaaatatctagagggtcaacttgcttggtacacttggaaggtagtcctagatatcttag |
15849614 |
T |
|
| Q |
329 |
cactcaatctgt |
340 |
Q |
| |
|
||||| ||||| |
|
|
| T |
15849613 |
tactcattctgt |
15849602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 39 - 327
Target Start/End: Original strand, 10699714 - 10699993
Alignment:
| Q |
39 |
caagtgtttacatgcattgcaaaattctggggttgaacaaatctttgatgctgaaaaatgggtccaagcgcatcgtcatgaattcaacaaggaggtttat |
138 |
Q |
| |
|
||||||||| |||||| ||| || |||||||||||| ||| || |||||| | ||||||||||||| |||||| |||||||| |||||||||||||| |
|
|
| T |
10699714 |
caagtgtttgcatgcactgcggaaatctggggttgaaagaattttcgatgcttataaatgggtccaagagcatcgcgatgaattccacaaggaggtttat |
10699813 |
T |
|
| Q |
139 |
ggcccagttttagtcgaggtatacatatatatgtttaaattattatgttttcatagcctttttgtcttcctacatggtccgttaaattgttgattgaatt |
238 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||| || ||||| |||||||||| |||||| ||| ||||| ||||||||||||| |||||| |
|
|
| T |
10699814 |
ggcccagttttagttgaggtata------tatgtcaaaagcat---gtttttatagccttttggtcttcttacttggtctgttaaattgttgagtgaatt |
10699904 |
T |
|
| Q |
239 |
gacaggtaaatgtcccagatcagtctcatgctaaatatctagagggtcaagttgcttggtacacttggaaggtagtcctagacatttta |
327 |
Q |
| |
|
|||||| |||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10699905 |
tacaggtgaatgtctcagatcaatctcatgctggatatctagagggtcaagttgcttggtacacttggaaggtagtcctagatatttta |
10699993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 50 - 327
Target Start/End: Original strand, 47438481 - 47438752
Alignment:
| Q |
50 |
atgcattgcaaaattctggggttgaacaaatctttgatgctgaaaaatgggtccaagcgcatcgtcatgaattcaacaaggaggtttatggcccagtttt |
149 |
Q |
| |
|
||||||||| || |||||||||||| ||| ||||||||| | ||||||||||||| |||||| |||||||| |||||||||| |||||||||||||| |
|
|
| T |
47438481 |
atgcattgcgaacatctggggttgaaagaatttttgatgcttataaatgggtccaagagcatcggaatgaattccacaaggaggtgtatggcccagtttt |
47438580 |
T |
|
| Q |
150 |
agtcgaggtatacatatatatgtttaaattattatgttttcatagcctttttgtcttcctacatggtccgttaaattgttgat----tgaattgacaggt |
245 |
Q |
| |
|
||| |||||||| |||||| ||||| || ||| |||||| ||| ||||| ||| | ||| |||||| || || | |||| |||||| |
|
|
| T |
47438581 |
agttgaggtata------tatgttaaaattttt----ttttatagccatttgttcttcttacttagtctgttaaactgccgagctaattaatttacaggt |
47438670 |
T |
|
| Q |
246 |
aaatgtcccagatcagtctcatgctaaatatctagagggtcaagttgcttggtacacttggaaggtagtcctagacatttta |
327 |
Q |
| |
|
|||||| | ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47438671 |
gaatgtctcggatcaatctcatgctggatatctagagggtcaagttgcttggtacacttggaaggtagtcctagatatttta |
47438752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 330 times since January 2019
Visitors: 3470