View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_low_6 (Length: 579)

Name: NF0493_low_6
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_low_6
NF0493_low_6
[»] chr7 (6 HSPs)
chr7 (284-530)||(30663036-30663284)
chr7 (32-161)||(30665806-30665930)
chr7 (235-287)||(30663309-30663362)
chr7 (303-373)||(43344672-43344742)
chr7 (303-373)||(1819797-1819867)
chr7 (390-424)||(1819882-1819916)
[»] chr6 (2 HSPs)
chr6 (303-424)||(31611499-31611619)
chr6 (390-424)||(34092963-34092997)
[»] chr5 (1 HSPs)
chr5 (323-424)||(8987756-8987856)
[»] scaffold0620 (1 HSPs)
scaffold0620 (390-424)||(8297-8331)


Alignment Details
Target: chr7 (Bit Score: 158; Significance: 8e-84; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 284 - 530
Target Start/End: Complemental strand, 30663284 - 30663036
Alignment:
Q  284 accaaaaccaatatgacggctaaaacaaacttcattgcaaacaaccaccggaaacgaaacccataagcactcatcgccgctactcgctccnnnnnnnn-- 381  Q
    |||||||||||||| || ||||||||||||| ||| ||||||||||||   |||| ||| |||||||||| |||||||||||||| ||                
T  30663284 accaaaaccaatatcacagctaaaacaaactccatagcaaacaaccactaaaaacaaaatccataagcacccatcgccgctactcactaaaaaaaaaaaa 30663185  T
Q  382 caactcttgcaatcaaacattctcttcacctccccatggttaatttttaaatttttcttatcatattctttagattccctaattttctttacctccattt 481  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30663184 caattcttgcaatcaaacattctcttcacctccccatggttaatttttaaatttttcttatcatattctttagattccctaattttctttacctccattt 30663085  T
Q  482 cctattcctttgtctccctctttctttcatcttccaagtcattcatctc 530  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30663084 cctattcctttgtctccctctttctttcatcttccaagtcattcatctc 30663036  T

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Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 32 - 161
Target Start/End: Complemental strand, 30665930 - 30665806
Alignment:
Q  32 ttccatgacagagacatggatgttggcaaaataaggaaagatagaaaccaacggcttcaaagacaagtaatacgaaccaaaagggaaatttgaaaatcca 131  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||     |||||||||||||||||||||||||||||| ||    
T  30665930 ttccatgagagagacatggatgttggcaaaataaggaaagatagaaaccaatggcttcaaag-----taatacgaaccaaaagggaaatttgaaaattca 30665836  T
Q  132 caatctgaaaatcaacgaaacttttagcat 161  Q
    |||||||||||||||| |||||||||||||    
T  30665835 caatctgaaaatcaacaaaacttttagcat 30665806  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 30663362 - 30663309
Alignment:
Q  235 acccaaaataaacaaagacacgaaaaacactcatcacctccctaa-acctacca 287  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  30663362 acccaaaataaacaaagacacgaaaagcactcatcacctccctaagacctacca 30663309  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 373
Target Start/End: Original strand, 43344672 - 43344742
Alignment:
Q  303 ctaaaacaaacttcattgcaaacaaccaccggaaacgaaacccataagcactcatcgccgctactcgctcc 373  Q
    |||||||||||| ||| |  ||||||||||  |||||||| | |||||||| |||||||||||||||||||    
T  43344672 ctaaaacaaactccatcgtgaacaaccaccaaaaacgaaatctataagcacccatcgccgctactcgctcc 43344742  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 373
Target Start/End: Original strand, 1819797 - 1819867
Alignment:
Q  303 ctaaaacaaacttcattgcaaacaaccaccggaaacgaaacccataagcactcatcgccgctactcgctcc 373  Q
    |||||||||||| ||  |||||||||||  |||||||||| ||||||  || |||||||||||||| ||||    
T  1819797 ctaaaacaaactccaacgcaaacaaccattggaaacgaaatccataaatacccatcgccgctactcactcc 1819867  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 424
Target Start/End: Original strand, 1819882 - 1819916
Alignment:
Q  390 gcaatcaaacattctcttcacctccccatggttaa 424  Q
    |||||||||||| ||||||||||||||||||||||    
T  1819882 gcaatcaaacatcctcttcacctccccatggttaa 1819916  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 424
Target Start/End: Complemental strand, 31611619 - 31611499
Alignment:
Q  303 ctaaaacaaacttcattgcaaacaaccaccggaaacgaaacccataagcactcatcgccgctactcgctccnnnnnnnncaactcttgcaatcaaacatt 402  Q
    |||||||||||| |||  | ||||||||  |||||||||| |||||||||  ||| |||||||||| ||||        || | || ||||||||||||     
T  31611619 ctaaaacaaactccatcacgaacaaccaatggaaacgaaatccataagcatccattgccgctactcactccaaaaaaa-cacccctcgcaatcaaacatc 31611521  T
Q  403 ctcttcacctccccatggttaa 424  Q
    ||||||||||||||||||||||    
T  31611520 ctcttcacctccccatggttaa 31611499  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 424
Target Start/End: Complemental strand, 34092997 - 34092963
Alignment:
Q  390 gcaatcaaacattctcttcacctccccatggttaa 424  Q
    |||||||||||| ||||||||||||||||||||||    
T  34092997 gcaatcaaacatcctcttcacctccccatggttaa 34092963  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 424
Target Start/End: Original strand, 8987756 - 8987856
Alignment:
Q  323 aacaaccaccggaaacgaaacccataagcactcatcgccgctactcgctccnnnnnnnncaactcttgcaatcaaacattctcttcacctccccatggtt 422  Q
    |||||||||  ||||||||| |||||| |||||||||||||||||| ||||        || |||  |||||||||||| ||||||| ||||||||||||    
T  8987756 aacaaccacttgaaacgaaatccataaccactcatcgccgctactcactcc-aaagaaacacctcgcgcaatcaaacatcctcttcatctccccatggtt 8987854  T
Q  423 aa 424  Q
    ||    
T  8987855 aa 8987856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 424
Target Start/End: Complemental strand, 8331 - 8297
Alignment:
Q  390 gcaatcaaacattctcttcacctccccatggttaa 424  Q
    |||||||||||| ||||||||||||||||||||||    
T  8331 gcaatcaaacatcctcttcacctccccatggttaa 8297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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