View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_60 (Length: 327)
Name: NF0493_low_60
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 40 - 211
Target Start/End: Complemental strand, 9780481 - 9780306
Alignment:
| Q |
40 |
tgcttattcagctaagcattagctagatgagtagtttcgaaaatgttgattcagaaatgagtagctagaaagtgattcatcttaaatatgaaatatggta |
139 |
Q |
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| T |
9780481 |
tgcttattcagctaagcattagctagatgagtagtttcgaaaatgttgattaagaaatgagtagctagaaagtgattcatcttaaatatgaaatatggta |
9780382 |
T |
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| Q |
140 |
ttcaaatattttagaagg----aaagnnnnnnnnnttaaacatgaaattgttcccattccgatcatataattagta |
211 |
Q |
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| T |
9780381 |
ttcaaatattttagaaggaaaaaaaaattaaaaaattaaacatgaaattgttcccattccgatcatataattagta |
9780306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 246 - 316
Target Start/End: Complemental strand, 9780271 - 9780201
Alignment:
| Q |
246 |
gtactaaataatccatcaaatctattctatttcttcccaatttctgtctttcaacattctctcttacctat |
316 |
Q |
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||||||||||||||||||||| ||||||||||||| | ||||| ||||||||||||||||||||||||||| |
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| T |
9780271 |
gtactaaataatccatcaaatttattctatttctttctaatttttgtctttcaacattctctcttacctat |
9780201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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