View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_62 (Length: 321)
Name: NF0493_low_62
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 39 - 228
Target Start/End: Complemental strand, 48586036 - 48585847
Alignment:
| Q |
39 |
ctgtgacacaagggaagaggaagtctttcttccaatataagagagcaagtattctcttgctataggtatctccaactttgaagaagaaaatcactcaata |
138 |
Q |
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| T |
48586036 |
ctgtgacacaagggaagaggaagtctttcttccaatataagagagcaagtattctcttgctataggtatctccaactttgaagaagaaaatcactcaata |
48585937 |
T |
|
| Q |
139 |
aataataaaaagaaaaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttgg |
228 |
Q |
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| T |
48585936 |
aataataaaaagaaaaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttgg |
48585847 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 48640495 - 48640420
Alignment:
| Q |
153 |
aaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttgg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48640495 |
aaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttgg |
48640420 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 48662100 - 48662059
Alignment:
| Q |
182 |
ctccttgtctcttttccagcacaaggacacataaaccatctt |
223 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||| |
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| T |
48662100 |
ctccttgtttcttttccagcacaaggacacataaaccctctt |
48662059 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 48667689 - 48667648
Alignment:
| Q |
182 |
ctccttgtctcttttccagcacaaggacacataaaccatctt |
223 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||| |
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| T |
48667689 |
ctccttgtttcttttccagcacaaggacacataaaccctctt |
48667648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 48629401 - 48629363
Alignment:
| Q |
185 |
cttgtctcttttccagcacaaggacacataaaccatctt |
223 |
Q |
| |
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||||| |||||||||||||||||||||||||||| |||| |
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|
| T |
48629401 |
cttgtttcttttccagcacaaggacacataaaccctctt |
48629363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 25892445 - 25892523
Alignment:
| Q |
151 |
aaaaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttggt |
229 |
Q |
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||||||| || || |||||||||||||||| |||||||||||||||||| ||| ||||| ||||||||||| ||||| |
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| T |
25892445 |
aaaaatggcaaacaaagatcccattaagctcctccttgtctcttttccatttcaacgacacctaaaccatcttcttggt |
25892523 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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