View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_64 (Length: 319)
Name: NF0493_low_64
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 98 - 292
Target Start/End: Complemental strand, 34563306 - 34563114
Alignment:
| Q |
98 |
caaattgcaccggtcatgctacaaaatggtagattcaatttaaatatctaaaagaaacatatcagccaccttccttggcaatccacgctgaagcacaaaa |
197 |
Q |
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| T |
34563306 |
caaattgcaccggtcatgctacaaaatggtagattcaatttaaatatctaaaaga--catatcagccaccttccttggcaatccacgttgaagcacaaaa |
34563209 |
T |
|
| Q |
198 |
ccgttgaaacatgcaacttccacgtacactgtctctctaattcaaataaaaccgcctataaccatcatcattccatctctatataaatgtttcat |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
34563208 |
ccgttgaaacatgcaacttccacgtacactgtctctctaatttaaataaaaccgcctataaccatcatcataccatttctatataaatgtttcat |
34563114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 292
Target Start/End: Complemental strand, 34572053 - 34571938
Alignment:
| Q |
177 |
aatccacgctgaagcacaaaaccgttgaaacatgcaacttccacgtacactgtctctctaattcaaataaaaccgcctataaccatcatcattccatctc |
276 |
Q |
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|||||||| |||| || ||||||||| || |||||||||||||||||||| | |||| |||||||||||||| |||||||||| ||||||||||| | |
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| T |
34572053 |
aatccacgttgaaacataaaaccgttaaagcatgcaacttccacgtacacgatatctcaaattcaaataaaactgcctataaccgtcatcattccactcc |
34571954 |
T |
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| Q |
277 |
tatataaatgtttcat |
292 |
Q |
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||||||||| |||||| |
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| T |
34571953 |
tatataaatctttcat |
34571938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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