View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_low_7 (Length: 512)

Name: NF0493_low_7
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_low_7
NF0493_low_7
[»] chr1 (14 HSPs)
chr1 (29-487)||(25266301-25266766)
chr1 (311-479)||(26657458-26657626)
chr1 (311-459)||(50047163-50047312)
chr1 (340-459)||(30675496-30675615)
chr1 (311-459)||(11769978-11770127)
chr1 (311-456)||(8247644-8247790)
chr1 (311-442)||(12423915-12424047)
chr1 (335-403)||(12810329-12810397)
chr1 (311-402)||(21451857-21451948)
chr1 (369-479)||(25727874-25727983)
chr1 (369-479)||(25736282-25736391)
chr1 (340-403)||(34381720-34381783)
chr1 (369-479)||(25730536-25730645)
chr1 (340-401)||(25494521-25494582)
[»] chr5 (17 HSPs)
chr5 (311-459)||(24841735-24841884)
chr5 (316-453)||(18222480-18222618)
chr5 (346-479)||(16634064-16634196)
chr5 (311-459)||(25594676-25594825)
chr5 (311-453)||(12340004-12340147)
chr5 (346-456)||(15205661-15205771)
chr5 (311-403)||(24517336-24517429)
chr5 (309-387)||(17382091-17382170)
chr5 (335-455)||(26330055-26330176)
chr5 (329-386)||(11274387-11274445)
chr5 (351-403)||(25680619-25680671)
chr5 (346-403)||(7742909-7742966)
chr5 (347-403)||(24268574-24268630)
chr5 (347-403)||(24345203-24345259)
chr5 (348-403)||(20694660-20694715)
chr5 (416-460)||(11997877-11997921)
chr5 (423-459)||(22754989-22755025)
[»] chr3 (13 HSPs)
chr3 (335-459)||(13911272-13911396)
chr3 (365-455)||(2729606-2729696)
chr3 (346-392)||(18065834-18065880)
chr3 (346-403)||(12409476-12409533)
chr3 (311-403)||(33914602-33914695)
chr3 (365-459)||(27415208-27415299)
chr3 (329-403)||(1475320-1475394)
chr3 (365-456)||(25883140-25883231)
chr3 (350-459)||(11474868-11474977)
chr3 (311-459)||(21017859-21018008)
chr3 (340-403)||(8402590-8402653)
chr3 (366-403)||(4780727-4780764)
chr3 (365-454)||(4775696-4775785)
[»] chr8 (13 HSPs)
chr8 (311-456)||(13081924-13082070)
chr8 (311-456)||(29047306-29047449)
chr8 (311-479)||(16052242-16052410)
chr8 (311-402)||(28901381-28901473)
chr8 (311-403)||(14977146-14977240)
chr8 (311-403)||(12956471-12956564)
chr8 (311-456)||(16054276-16054422)
chr8 (315-459)||(32239273-32239418)
chr8 (337-403)||(28902098-28902164)
chr8 (365-455)||(5570129-5570219)
chr8 (311-390)||(6358680-6358760)
chr8 (366-403)||(35135462-35135499)
chr8 (371-403)||(24584764-24584796)
[»] chr7 (11 HSPs)
chr7 (311-456)||(22067791-22067939)
chr7 (335-451)||(1255205-1255321)
chr7 (311-403)||(29544501-29544594)
chr7 (346-479)||(7142116-7142248)
chr7 (312-455)||(7815306-7815450)
chr7 (345-399)||(21545843-21545897)
chr7 (315-403)||(23124886-23124975)
chr7 (337-392)||(9066141-9066196)
chr7 (329-403)||(315186-315260)
chr7 (340-479)||(20470775-20470913)
chr7 (311-394)||(20446221-20446305)
[»] chr4 (13 HSPs)
chr4 (312-403)||(27302761-27302853)
chr4 (329-479)||(25315196-25315345)
chr4 (335-403)||(47024796-47024864)
chr4 (340-403)||(10576465-10576528)
chr4 (311-395)||(5906768-5906853)
chr4 (311-403)||(12111371-12111463)
chr4 (365-477)||(15192240-15192351)
chr4 (311-479)||(34864260-34864424)
chr4 (315-403)||(1676335-1676424)
chr4 (315-403)||(1682863-1682952)
chr4 (330-403)||(9783023-9783096)
chr4 (311-402)||(18897973-18898065)
chr4 (364-459)||(10320203-10320298)
[»] chr2 (12 HSPs)
chr2 (311-456)||(21505126-21505272)
chr2 (311-455)||(30998753-30998898)
chr2 (329-453)||(35031703-35031827)
chr2 (309-455)||(16593738-16593887)
chr2 (311-456)||(35707785-35707931)
chr2 (340-403)||(24047394-24047457)
chr2 (315-456)||(25474023-25474165)
chr2 (309-403)||(1733080-1733175)
chr2 (416-479)||(27417228-27417290)
chr2 (340-401)||(21843044-21843105)
chr2 (340-401)||(21844671-21844732)
chr2 (349-401)||(32276555-32276607)
[»] chr6 (6 HSPs)
chr6 (334-459)||(17860432-17860557)
chr6 (329-403)||(13759491-13759565)
chr6 (329-403)||(30355327-30355400)
chr6 (317-440)||(16527878-16528002)
chr6 (416-456)||(15998599-15998639)
chr6 (138-195)||(22609481-22609538)
[»] scaffold0171 (1 HSPs)
scaffold0171 (369-477)||(21438-21545)
[»] scaffold0065 (1 HSPs)
scaffold0065 (416-479)||(12332-12394)
[»] scaffold0282 (1 HSPs)
scaffold0282 (365-395)||(22593-22623)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 29 - 487
Target Start/End: Complemental strand, 25266766 - 25266301
Alignment:
Q  29 aaaaattacatattattttaaaggtttaatagttcaaattaacttnnnnnnnnnnnncacaaaatctaaaaaataacatgacggaattacaactgttcca 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||| ||||||    
T  25266766 aaaaattacatattattttaaaggtttaatagttcaaattaactttatatata----cacaaaatctaaaaaataacatgacggaattacaaccgttcca 25266671  T
Q  129 tcttaaaaatgttggttttgaatttccgaactattatatccggattttcaaagcctattttaaaaaagaagnnnnnnnnnnatttactgaagctataatt 228  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||          || |||| ||||||||| |    
T  25266670 tcttaaaaatgttggttttaaatttccaaactattatatccggattttcaaagcctattttaaaaaagaag--ttttttttatctacttaagctataact 25266573  T
Q  229 ggattgagtcacgatcaaatcactctctttaaaacatttcatggtactgatgacatagcatatgacattttttggttatgtt-------------tttgc 315  Q
    || |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||             |||||    
T  25266572 gggttgagtcacgatcagatcactctctttaaaacatttcaaggtactgatgacatagcatatgacattttttggttatgtttttagtacttttctttgc 25266473  T
Q  316 atttgaagacagaaagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctgg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       | |||    
T  25266472 atttgaagacagaaagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcatttttatcttgg 25266373  T
Q  416 atcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatcgtgacatc 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||    
T  25266372 atcatggaacttcatatgtgttttgagtgttttgtagtgagaaaagcatccaaatcgactaatcgtgacatc 25266301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 311 - 479
Target Start/End: Original strand, 26657458 - 26657626
Alignment:
Q  311 tttgcatttgaagacagaaa-gataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 409  Q
    |||||||||||||||| | | | | |||||||||| ||||||||||||| |||  || ||| |||||||||||||||||| || ||||||||||          
T  26657458 tttgcatttgaagacaaatatgttgagagatagaggagttgtcaatggtttgaggaatataatgtattgttttcactcgattcgttgtaattcactttta 26657557  T
Q  410 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatc 479  Q
     ||| ||||| | |||| |||| ||||||||||||||||||||||| |||| ||| ||||||||||||||    
T  26657558 tcctagatcacgcaactccataggtgttttgagtgttttgtagtga-aaaatcatgtaaatcgacaaatc 26657626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 459
Target Start/End: Original strand, 50047163 - 50047312
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 409  Q
    |||||||||||||||| | ||||| | |  ||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||| ||||||||          
T  50047163 tttgcatttgaagacaaataagatgaaaagtagaggagttgtcaatgatttgagaaacatattgtattgttttcactcgagtcatggtaattcactttta 50047262  T
Q  410 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 459  Q
     |||  |||||  |||| ||||| ||||||||||||||||||| ||||||    
T  50047263 tcctaaatcatacaactccatatatgttttgagtgttttgtagcgagaaa 50047312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 340 - 459
Target Start/End: Original strand, 30675496 - 30675615
Alignment:
Q  340 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgtttt 439  Q
    ||||| ||||||||||||| |||  |||||||||||||||||||||||||||| ||||||| ||       |||  |||||| |||| |||| |||||||    
T  30675496 tagaggagttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaatacacttttgtcctatatcatgcaactccataggtgtttt 30675595  T
Q  440 gagtgttttgtagtgagaaa 459  Q
    ||||||||| ||||||||||    
T  30675596 gagtgttttatagtgagaaa 30675615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 311 - 459
Target Start/End: Complemental strand, 11770127 - 11769978
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 409  Q
    |||||||||||||| | | ||||| |||| ||||||| ||||||||||| | |  |||||||||||||||||||||||| ||| ||||||||||          
T  11770127 tttgcatttgaagataaataagatgagagttagagaatttgtcaatggtttaaggaacatattgtattgttttcactcgtgtcgttgtaattcactttta 11770028  T
Q  410 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 459  Q
     |||  |||||| ||||||||  |||| |||||||||||| |||||||||    
T  11770027 tcctaaatcatgaaacttcatgggtgtgttgagtgttttgcagtgagaaa 11769978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 311 - 456
Target Start/End: Complemental strand, 8247790 - 8247644
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 409  Q
    |||||||||||||||| | ||||| |||| ||||| || | |||||||| |||  |||||||| |||| |||||||| ||||||||||||||            
T  8247790 tttgcatttgaagacaaataagatgagagttagaggagatatcaatggtttgaggaacatattttattattttcacttgagtcattgtaattttgtttta 8247691  T
Q  410 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 456  Q
     ||| ||||||| |||| |||| ||||||||||||||||||||||||    
T  8247690 ccctagatcatgcaactccataggtgttttgagtgttttgtagtgag 8247644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 12424047 - 12423915
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 409  Q
    |||||||||||||||| | ||||| ||||| ||||  ||||| |||||| |||  |||||||  ||||||||||||||||||||||||||||||          
T  12424047 tttgcatttgaagacaaataagatgagagacagaggcgttgttaatggtttgaggaacatatgatattgttttcactcgagtcattgtaattcagtttta 12423948  T
Q  410 ncctggatcatggaacttcatatgtgttttgag 442  Q
     | | ||||||| |||| |||||||||||||||    
T  12423947 tcttagatcatgcaactccatatgtgttttgag 12423915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 335 - 403
Target Start/End: Original strand, 12810329 - 12810397
Alignment:
Q  335 agagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    |||||||||| ||||||||||||| |||  |||||||||||||||||||| || |||| ||||||||||    
T  12810329 agagatagaggagttgtcaatggtttgaggaacatattgtattgttttcattcaagtcgttgtaattca 12810397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 311 - 402
Target Start/End: Complemental strand, 21451948 - 21451857
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattc 402  Q
    |||||||||||||||| | ||||| |||||||||  ||||||||||||||| |  ||||||||||||| ||||||||||| ||||| ||||||    
T  21451948 tttgcatttgaagacaaataagatgagagatagaagagttgtcaatggtat-aggaacatattgtattattttcactcgactcattataattc 21451857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 479
Target Start/End: Complemental strand, 25727983 - 25727874
Alignment:
Q  369 tattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaa 468  Q
    ||||||||||||||||||| | || ||||||||||       |||  |||||| ||||  ||| |||||||||||||||||||||||| ||| ||| |||    
T  25727983 tattgtattgttttcactctaatcgttgtaattcacttttatcctaaatcatgcaactcaataggtgttttgagtgttttgtagtgag-aaatcatgtaa 25727885  T
Q  469 atcgacaaatc 479  Q
    |||||||||||    
T  25727884 atcgacaaatc 25727874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 479
Target Start/End: Complemental strand, 25736391 - 25736282
Alignment:
Q  369 tattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaa 468  Q
    ||||||||||||||||||| | || ||||||||||       |||  |||||| ||||  ||| |||||||||||||||||||||||| ||| ||| |||    
T  25736391 tattgtattgttttcactctaatcgttgtaattcacttttatcctaaatcatgcaactcaataggtgttttgagtgttttgtagtgag-aaatcatgtaa 25736293  T
Q  469 atcgacaaatc 479  Q
    |||||||||||    
T  25736292 atcgacaaatc 25736282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 403
Target Start/End: Original strand, 34381720 - 34381783
Alignment:
Q  340 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    ||||| |||||| |||||| |||| |||||||| ||||||||||| ||||||| ||||||||||    
T  34381720 tagaggagttgttaatggtttgaagaacatattatattgttttcattcgagtcgttgtaattca 34381783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 479
Target Start/End: Complemental strand, 25730645 - 25730536
Alignment:
Q  369 tattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaa 468  Q
    |||||||||||||||| || | |||||| ||||||       |||  |||||| ||||||| | |||||||||||||||||||| ||| ||| ||| |||    
T  25730645 tattgtattgttttcattcaaatcattgaaattcaattttatcctaaatcatgcaacttcacaggtgttttgagtgttttgtagcgag-aaatcatgtaa 25730547  T
Q  469 atcgacaaatc 479  Q
    |||||||||||    
T  25730546 atcgacaaatc 25730536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 401
Target Start/End: Complemental strand, 25494582 - 25494521
Alignment:
Q  340 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaatt 401  Q
    ||||| ||||||||||||| |||  |||||||||| |||||||| || ||||| ||||||||    
T  25494582 tagaggagttgtcaatggtttgaggaacatattgtcttgttttctcttgagtccttgtaatt 25494521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 311 - 459
Target Start/End: Original strand, 24841735 - 24841884
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 409  Q
    |||||||||||||||| | ||| | |||||||||| |||| |||||||| |||  |||||||||||||||||||||||||||| |||||| |||          
T  24841735 tttgcatttgaagacaaataagtttagagatagaggagttttcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaagtcactttta 24841834  T
Q  410 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 459  Q
     ||| |||||||||||| |||| ||||||| |||||||||||||||||||    
T  24841835 tcctagatcatggaactccataggtgtttttagtgttttgtagtgagaaa 24841884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 453
Target Start/End: Original strand, 18222480 - 18222618
Alignment:
Q  316 atttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctg 414  Q
    ||||||||||| | ||||| |||| ||||  ||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||       |||     
T  18222480 atttgaagacaaataagatgagagttagatgagttgtcaatggtttgagaaacatattgtattgttttaactcgagtcattgtaattcacttttatccta 18222579  T
Q  415 gatcatggaacttcatatgtgttttgagtgttttgtagt 453  Q
     |||||| || | |||| |||||||||||||||| ||||    
T  18222580 aatcatgcaaatccataggtgttttgagtgttttatagt 18222618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 346 - 479
Target Start/End: Original strand, 16634064 - 16634196
Alignment:
Q  346 agttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgt 445  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||        ||  |||||| ||||  ||| ||||||||| |||    
T  16634064 agttgtcaatggtttgagaaacatattgtattgttttcactcgagtcgttgtaattcacttttattctaaatcatgcaactctataggtgttttgaatgt 16634163  T
Q  446 tttgtagtgagaaaaacatctaaatcgacaaatc 479  Q
    |||| |||||| ||| ||| ||||||||||||||    
T  16634164 tttgcagtgag-aaatcatataaatcgacaaatc 16634196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 311 - 459
Target Start/End: Complemental strand, 25594825 - 25594676
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 409  Q
    |||||||||||||||| | ||||| |||| ||||| | || |||||||| |||  |||||||||||||||||||||| ||||  ||||| ||||          
T  25594825 tttgcatttgaagacaaataagatgagagttagaggatttctcaatggtttgaggaacatattgtattgttttcactggagttgttgtatttcattttta 25594726  T
Q  410 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 459  Q
     |||  || ||| |||||||||||||||||||||||||| ||||||||||    
T  25594725 tcctaaatgatgcaacttcatatgtgttttgagtgttttatagtgagaaa 25594676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 453
Target Start/End: Complemental strand, 12340147 - 12340004
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 409  Q
    |||||||||||||||| | ||| | |||| ||||| ||||||||||||| |||  |||||||| |||| |||||||| | ||||||||||||||          
T  12340147 tttgcatttgaagacaaataaggtgagagttagaggagttgtcaatggtttgaggaacatattatattattttcacttgtgtcattgtaattcagtttta 12340048  T
Q  410 ncctggatcatggaacttcatatgtgttttgagtgttttgtagt 453  Q
      || ||||||| |||||||||||| ||||| ||||||||||||    
T  12340047 tactagatcatgcaacttcatatgtattttgcgtgttttgtagt 12340004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 346 - 456
Target Start/End: Original strand, 15205661 - 15205771
Alignment:
Q  346 agttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgt 445  Q
    |||||||| |||| |||  |||||||||||||||||||||||||||| ||||||||||       ||| ||||||| || | |||| |||||||||||||    
T  15205661 agttgtcagtggtttgaggaacatattgtattgttttcactcgagtcgttgtaattcagttttctcctagatcatgcaattccataggtgttttgagtgt 15205760  T
Q  446 tttgtagtgag 456  Q
    |||| ||||||    
T  15205761 tttgcagtgag 15205771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 311 - 403
Target Start/End: Original strand, 24517336 - 24517429
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    |||||||||||||||| | ||||| |||  ||||| ||||||||||||| |||  ||||||||||||||||||||| |||||| ||||||||||    
T  24517336 tttgcatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaacatattgtattgttttcacccgagtcgttgtaattca 24517429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 309 - 387
Target Start/End: Complemental strand, 17382170 - 17382091
Alignment:
Q  309 tttttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactc 387  Q
    |||||||||||||||||| | ||||| |||| ||||| ||||||||||||| |||  |||||||||||||||||||||||    
T  17382170 tttttgcatttgaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtattgttttcactc 17382091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 335 - 455
Target Start/End: Complemental strand, 26330176 - 26330055
Alignment:
Q  335 agagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtca-ttgtaattcannnnnnncctggatcatggaacttcatatg 433  Q
    |||||| ||| ||||||||||||| | |  || ||||||||||||||||||| ||| || |||||||||        ||| ||||||| ||||||||| |    
T  26330176 agagatggagtagttgtcaatggtctaaggaatatattgtattgttttcacttgagccagttgtaattcccttttatcctagatcatgcaacttcatagg 26330077  T
Q  434 tgttttgagtgttttgtagtga 455  Q
    ||||||||||||||||||||||    
T  26330076 tgttttgagtgttttgtagtga 26330055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 386
Target Start/End: Complemental strand, 11274445 - 11274387
Alignment:
Q  329 aagataagagatagagaagttgtcaatggtatga-aaaacatattgtattgttttcact 386  Q
    |||||||||||||||  ||||||||||||| ||| ||||||||||||||||||||||||    
T  11274445 aagataagagatagatcagttgtcaatggtttgagaaaacatattgtattgttttcact 11274387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 403
Target Start/End: Original strand, 25680619 - 25680671
Alignment:
Q  351 tcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    |||||||| |||  |||||||||||||||||||||||||||| ||||||||||    
T  25680619 tcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaattca 25680671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 346 - 403
Target Start/End: Complemental strand, 7742966 - 7742909
Alignment:
Q  346 agttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    ||||||||||||| |||| ||||| |||||||||||||  ||||||| ||||||||||    
T  7742966 agttgtcaatggtttgaagaacattttgtattgttttcgttcgagtctttgtaattca 7742909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 24268574 - 24268630
Alignment:
Q  347 gttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    |||||| ||||| |||  ||||| ||||||||||||||||||||||||| |||||||    
T  24268574 gttgtcgatggtttgaggaacatcttgtattgttttcactcgagtcattataattca 24268630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 24345203 - 24345259
Alignment:
Q  347 gttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    |||||| ||||| |||  ||||| ||||||||||||||||||||||||| |||||||    
T  24345203 gttgtcgatggtttgaggaacatcttgtattgttttcactcgagtcattataattca 24345259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 403
Target Start/End: Original strand, 20694660 - 20694715
Alignment:
Q  348 ttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    ||||||||||| |||  ||| | |||||||||||||| ||||||||||||||||||    
T  20694660 ttgtcaatggtttgaggaactttttgtattgttttcattcgagtcattgtaattca 20694715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 460
Target Start/End: Complemental strand, 11997921 - 11997877
Alignment:
Q  416 atcatggaacttcatatgtgttttgagtgttttgtagtgagaaaa 460  Q
    |||||| ||||||||| ||||||||||| |||| |||||||||||    
T  11997921 atcatgcaacttcataggtgttttgagttttttttagtgagaaaa 11997877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 459
Target Start/End: Original strand, 22754989 - 22755025
Alignment:
Q  423 aacttcatatgtgttttgagtgttttgtagtgagaaa 459  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  22754989 aacttcataggtgttttgagtgttttgaagtgagaaa 22755025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 335 - 459
Target Start/End: Original strand, 13911272 - 13911396
Alignment:
Q  335 agagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgt 434  Q
    |||||||||  ||||||||||||| |||  ||||||| |||||||||||||| || |||||||||||||       ||| ||||||| ||||||||||||    
T  13911272 agagatagaagagttgtcaatggtttgaggaacatatggtattgttttcacttgaatcattgtaattcacttttatcctagatcatgcaacttcatatgt 13911371  T
Q  435 gttttgagtgttttgtagtgagaaa 459  Q
    ||||| |||||||||||||||||||    
T  13911372 gtttttagtgttttgtagtgagaaa 13911396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 365 - 455
Target Start/End: Complemental strand, 2729696 - 2729606
Alignment:
Q  365 aacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtga 455  Q
    |||||||| ||||||||||||||||||| ||||||||||       |||  | |||| |||||||||||||||||||||||||||||||||    
T  2729696 aacatattatattgttttcactcgagtccttgtaattcatttttatcctaaaccatgcaacttcatatgtgttttgagtgttttgtagtga 2729606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 346 - 392
Target Start/End: Original strand, 18065834 - 18065880
Alignment:
Q  346 agttgtcaatggtatgaaaaacatattgtattgttttcactcgagtc 392  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  18065834 agttgtcaatggtttgagaaacatattgtattgttttcactcgagtc 18065880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 403
Target Start/End: Original strand, 12409476 - 12409533
Alignment:
Q  346 agttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    ||||||||||||| |||| ||||||||||||| |||||||| ||||| ||||||||||    
T  12409476 agttgtcaatggtttgaagaacatattgtattattttcacttgagtcgttgtaattca 12409533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 403
Target Start/End: Complemental strand, 33914695 - 33914602
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    ||||||||| |||||| | ||||| |||| || || ||||||||| ||| |||  |||||||||||||||||| ||||||||| ||||||||||    
T  33914695 tttgcatttcaagacaaataagatgagagttataggagttgtcaacggtttgaggaacatattgtattgtttttactcgagtcgttgtaattca 33914602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 459
Target Start/End: Original strand, 27415208 - 27415299
Alignment:
Q  365 aacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 459  Q
    ||||||||||||||||||||||||||||   ||||||||       | |  |||||| ||||||||| ||||||||||||||||||||| |||||    
T  27415208 aacatattgtattgttttcactcgagtc---gtaattcacttttatcgtaaatcatgcaacttcataggtgttttgagtgttttgtagtaagaaa 27415299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 1475394 - 1475320
Alignment:
Q  329 aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    ||||| |||| ||||| |||| |||||||| |||  || |||||||||| |||||||||||||| ||||||||||    
T  1475394 aagatgagagttagaggagttttcaatggtttgaggaatatattgtattattttcactcgagtcgttgtaattca 1475320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 456
Target Start/End: Original strand, 25883140 - 25883231
Alignment:
Q  365 aacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 456  Q
    |||||||| |||||||||||||||| || ||||||||||       ||| ||| ||| |||| |||| |||||||||||||||| |||||||    
T  25883140 aacatattatattgttttcactcgaatcgttgtaattcagttttatcctagattatgcaactacataggtgttttgagtgttttatagtgag 25883231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 459
Target Start/End: Original strand, 11474868 - 11474977
Alignment:
Q  350 gtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttg 449  Q
    ||||||||| |||  ||| | ||||||| |||||| |||| || ||||||||||       |||  |||||| ||||||||||||||||||||| ||||     
T  11474868 gtcaatggtttgaggaactttttgtattattttcattcgactcgttgtaattcaattttatcctaaatcatgcaacttcatatgtgttttgagtcttttt 11474967  T
Q  450 tagtgagaaa 459  Q
    ||||||||||    
T  11474968 tagtgagaaa 11474977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 459
Target Start/End: Original strand, 21017859 - 21018008
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 409  Q
    |||||||||||||| | | ||||| |||| ||||| ||||| ||||  | |||  |||||||| |||| ||||||  |||||| ||||||||||          
T  21017859 tttgcatttgaagaaaaataagatgagagttagaggagttggcaataatttgaggaacatattatattattttcaaccgagtcgttgtaattcagtttta 21017958  T
Q  410 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 459  Q
     ||| ||||||| ||||  | ||||||||||||||||||||| |||||||    
T  21017959 tcctagatcatgcaactctaaatgtgttttgagtgttttgtattgagaaa 21018008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 403
Target Start/End: Complemental strand, 8402653 - 8402590
Alignment:
Q  340 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    ||||| ||||||||||||| |||  ||||  |||||||||||||| ||||||| ||||||||||    
T  8402653 tagaggagttgtcaatggtttgaggaacaatttgtattgttttcattcgagtcgttgtaattca 8402590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 403
Target Start/End: Complemental strand, 4780764 - 4780727
Alignment:
Q  366 acatattgtattgttttcactcgagtcattgtaattca 403  Q
    ||||||||||||||||||||| || |||||||||||||    
T  4780764 acatattgtattgttttcacttgaatcattgtaattca 4780727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 454
Target Start/End: Complemental strand, 4775785 - 4775696
Alignment:
Q  365 aacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtg 454  Q
    |||||||| ||||||||||||  ||||| ||||||||||       ||| ||||||| |||||||||| | |||| |||| |||||||||    
T  4775785 aacatattttattgttttcacctgagtcgttgtaattcactcttatcctagatcatgcaacttcatatatattttaagtggtttgtagtg 4775696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 311 - 456
Target Start/End: Complemental strand, 13082070 - 13081924
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 409  Q
    |||||||||||||||| | ||||| |||| ||||| ||||||||||| | ||| |||||  ||||| |||||||||||||||  ||||||||||          
T  13082070 tttgcatttgaagacaaataagatgagagttagaggagttgtcaatgatttgagaaacacgttgtagtgttttcactcgagtagttgtaattcagttgta 13081971  T
Q  410 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 456  Q
     ||| ||||||| ||||||||| |||||||||| |||||||||||||    
T  13081970 tcctagatcatgcaacttcataggtgttttgagagttttgtagtgag 13081924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 311 - 456
Target Start/End: Complemental strand, 29047449 - 29047306
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 409  Q
    |||||||||||| ||| | ||||| |||| ||||| |||||||||||||| |||   || |||||||||||||||||||||||| |||||||||          
T  29047449 tttgcatttgaaaacaaataagatgagagttagaggagttgtcaatggtaggaa---cacattgtattgttttcactcgagtcactgtaattcaatttta 29047353  T
Q  410 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 456  Q
       ||||||||| |||| ||||| |||||||||||||||||||||||    
T  29047352 taatggatcatgcaactccatatatgttttgagtgttttgtagtgag 29047306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 311 - 479
Target Start/End: Complemental strand, 16052410 - 16052242
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 409  Q
    ||||||||||| |||| | || || |||| ||||| ||||||||||||| |||| |||||||| || |||||||||||||||| || |||||||          
T  16052410 tttgcatttgaggacaaataaaatgagagttagaggagttgtcaatggtttgaataacatattttaatgttttcactcgagtcgttataattcacattta 16052311  T
Q  410 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatc 479  Q
     | |  |||||| ||||  ||| |||||||||||||||||||||||| ||| |||||||||| |||||||    
T  16052310 ccttaaatcatgcaactcaataggtgttttgagtgttttgtagtgag-aaatcatctaaatcaacaaatc 16052242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 311 - 402
Target Start/End: Complemental strand, 28901473 - 28901381
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattc 402  Q
    |||||||||||| ||| | ||| | |||||||||| ||||||||||||| |||  |||||||||||||||||||||||||||| |||||||||    
T  28901473 tttgcatttgaatacaaataagttgagagatagaggagttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaattc 28901381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 403
Target Start/End: Complemental strand, 14977240 - 14977146
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattg-ttttcactcgagtcattgtaattca 403  Q
    ||||||||| |||||| | ||||| |||| ||||| ||||||||||||| |||  |||||||||||||| |||||||||||||||||||||||||    
T  14977240 tttgcattttaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtattgtttttcactcgagtcattgtaattca 14977146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 311 - 403
Target Start/End: Original strand, 12956471 - 12956564
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    |||||||||||||| | | ||||| |||| ||||| ||||||||||||| |||  || ||||||||||||||||||||||||||| ||||||||    
T  12956471 tttgcatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaaaatattgtattgttttcactcgagtcatcgtaattca 12956564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 311 - 456
Target Start/End: Original strand, 16054276 - 16054422
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 409  Q
    |||||||||||||||| | |||||||||| ||||| ||||||||||| | | |  ||||| |||||||||||||||||||||  ||||||||||          
T  16054276 tttgcatttgaagacaaataagataagagttagaggagttgtcaatgatttaaggaacattttgtattgttttcactcgagttgttgtaattcattttta 16054375  T
Q  410 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 456  Q
     ||| ||||||  |||| ||||  |||||||| ||||||||||||||    
T  16054376 tcctagatcataaaactccatagatgttttgattgttttgtagtgag 16054422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 315 - 459
Target Start/End: Original strand, 32239273 - 32239418
Alignment:
Q  315 catttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncct 413  Q
    |||||||||| ||| ||||||| |  ||||| ||||||||||||| |||  |||||||||||||||||| ||| ||||| ||| ||||||       | |    
T  32239273 catttgaagatagataagataataattagaggagttgtcaatggtttgagtaacatattgtattgtttttacttgagtcgttgcaattcacttttatctt 32239372  T
Q  414 ggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 459  Q
      |||||| |||| ||||  ||||||||||||||||||||||||||    
T  32239373 aaatcatgcaactccataaatgttttgagtgttttgtagtgagaaa 32239418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 337 - 403
Target Start/End: Original strand, 28902098 - 28902164
Alignment:
Q  337 agatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    |||||||| |||| | |||||| ||| ||||||||||||||||||||| ||||||| ||||||||||    
T  28902098 agatagaggagttattaatggtttgagaaacatattgtattgttttcattcgagtcgttgtaattca 28902164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 455
Target Start/End: Complemental strand, 5570219 - 5570129
Alignment:
Q  365 aacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtga 455  Q
    |||||||||||||||||||||||||||  ||||||||||       |||  |||||| |||||| || |||||||||||||||| ||||||    
T  5570219 aacatattgtattgttttcactcgagttgttgtaattcacttttatcctatatcatgcaacttcgtaggtgttttgagtgttttctagtga 5570129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 390
Target Start/End: Original strand, 6358680 - 6358760
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgag 390  Q
    |||||||||||||||| | ||| | |||||||||| |||||| |||||| ||  ||||||||||||||||||||| |||||    
T  6358680 tttgcatttgaagacatataagttgagagatagaggagttgttaatggtttgggaaacatattgtattgttttcaatcgag 6358760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 403
Target Start/End: Complemental strand, 35135499 - 35135462
Alignment:
Q  366 acatattgtattgttttcactcgagtcattgtaattca 403  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  35135499 acattttgtattgtttttactcgagtcattgtaattca 35135462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 24584796 - 24584764
Alignment:
Q  371 ttgtattgttttcactcgagtcattgtaattca 403  Q
    |||||||||||||| ||||||||||||||||||    
T  24584796 ttgtattgttttcattcgagtcattgtaattca 24584764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 456
Target Start/End: Complemental strand, 22067939 - 22067791
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 409  Q
    |||||||||||||||| | ||||| |||| || || ||||||||||||| |||  |||||| ||||||||||||||||||||||||||||||||          
T  22067939 tttgcatttgaagacaaataagatgagagttaaaggagttgtcaatggtttgaggaacataatgtattgttttcactcgagtcattgtaattcaatttta 22067840  T
Q  410 ncctggatcatggaacttcata--tgtgttttgagtgttttgtagtgag 456  Q
     ||| ||||||| |||| ||||  | | |||||||||||||||||||||    
T  22067839 tcctagatcatgcaactccataggtattttttgagtgttttgtagtgag 22067791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 335 - 451
Target Start/End: Complemental strand, 1255321 - 1255205
Alignment:
Q  335 agagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgt 434  Q
    |||| ||||| ||||||||||||| |||  || | ||||||||||||||||||||||||||||||||||       |||  |||||| ||||||||| ||    
T  1255321 agagttagaggagttgtcaatggtttgaggaataaattgtattgttttcactcgagtcattgtaattcatttttatcctaaatcatgcaacttcataggt 1255222  T
Q  435 gttttgagtgttttgta 451  Q
    |||||||||||||||||    
T  1255221 gttttgagtgttttgta 1255205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 311 - 403
Target Start/End: Original strand, 29544501 - 29544594
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    |||||||||||||||| | ||||| |||| ||||| |||||||||| || |||  |||||||||||||||||||||||||||| ||||||||||    
T  29544501 tttgcatttgaagacaaataagatgagagttagaggagttgtcaatagtttgaggaacatattgtattgttttcactcgagtcgttgtaattca 29544594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 479
Target Start/End: Original strand, 7142116 - 7142248
Alignment:
Q  346 agttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgt 445  Q
    ||||||||||||| | |  |||||||| ||||| ||||||||||||| ||||||||||       ||  ||||||| |||| |||| ||||||| |||||    
T  7142116 agttgtcaatggtttaaggaacatattttattgctttcactcgagtcgttgtaattcacttttatccaagatcatgcaactccataggtgttttaagtgt 7142215  T
Q  446 tttgtagtgagaaaaacatctaaatcgacaaatc 479  Q
    ||||||||||| ||| ||| ||||||||||||||    
T  7142216 tttgtagtgag-aaatcatgtaaatcgacaaatc 7142248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 455
Target Start/End: Original strand, 7815306 - 7815450
Alignment:
Q  312 ttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnn 410  Q
    ||||||||||||| | | ||||| |||| || || | ||||||||||| | | |||||||||||||| |||||||||| ||  ||||||||||           
T  7815306 ttgcatttgaagataaataagatgagagttaaaggacttgtcaatggtttaagaaacatattgtatttttttcactcgggtggttgtaattcagttttat 7815405  T
Q  411 cctggatcatggaacttcatatgtgttttgagtgttttgtagtga 455  Q
     ||  |||||| ||||||||| |||||||||||||||||||||||    
T  7815406 tctaaatcatgcaacttcataggtgttttgagtgttttgtagtga 7815450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 345 - 399
Target Start/End: Complemental strand, 21545897 - 21545843
Alignment:
Q  345 aagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaa 399  Q
    |||||||||||||| |||  |||||||||||||||||||||||||||| ||||||    
T  21545897 aagttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaa 21545843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 403
Target Start/End: Original strand, 23124886 - 23124975
Alignment:
Q  315 catttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    |||||||||||| | ||||| |||  ||||| |||||| | |||| |||  |||||||||||||||||||||||||||| ||||||||||    
T  23124886 catttgaagacaaataagatgagatttagaggagttgttagtggtctgaggaacatattgtattgttttcactcgagtcgttgtaattca 23124975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 337 - 392
Target Start/End: Original strand, 9066141 - 9066196
Alignment:
Q  337 agatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtc 392  Q
    |||||||||||||||||||| | | |  ||||||||||||||||||||||||||||    
T  9066141 agatagagaagttgtcaatgtttttaggaacatattgtattgttttcactcgagtc 9066196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 403
Target Start/End: Original strand, 315186 - 315260
Alignment:
Q  329 aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    ||||| |||| ||||| ||||||||||||| |||| || |||||||||| || |||||||||| ||||| |||||    
T  315186 aagatgagagttagaggagttgtcaatggtttgaagaatatattgtattattgtcactcgagttattgttattca 315260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 479
Target Start/End: Complemental strand, 20470913 - 20470775
Alignment:
Q  340 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgtttt 439  Q
    ||||| ||||||||||||| |||  |||||||| |||||||||||||  |||| ||||||||||       |||  |||||| | || ||||  ||||||    
T  20470913 tagaggagttgtcaatggtttgaggaacatattatattgttttcacttaagtcgttgtaattcactttcagcctaaatcatgcatctgcatagctgtttt 20470814  T
Q  440 gagtgttttgtagtgagaaaaacatctaaatcgacaaatc 479  Q
    ||||||||| ||||||  ||| ||| ||||||||||||||    
T  20470813 gagtgttttatagtga-taaagcatgtaaatcgacaaatc 20470775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 394
Target Start/End: Original strand, 20446221 - 20446305
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcat 394  Q
    ||||||||||||||||   ||||| |||  ||||| ||||||||||||| | | ||||||||||| ||||||||||| |||||||    
T  20446221 tttgcatttgaagacaattaagatgagaattagaggagttgtcaatggtttcagaaacatattgttttgttttcacttgagtcat 20446305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 312 - 403
Target Start/End: Original strand, 27302761 - 27302853
Alignment:
Q  312 ttgcatttgaagacagaaa-gataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    ||||||||||||||| | | ||| | |||||||||||||||||||||| |||  ||||| |||||||||||||||||||||||||||||||||    
T  27302761 ttgcatttgaagacaaatatgatgatagatagagaagttgtcaatggtttgaggaacattttgtattgttttcactcgagtcattgtaattca 27302853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 329 - 479
Target Start/End: Complemental strand, 25315345 - 25315196
Alignment:
Q  329 aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttc 428  Q
    ||||| |||||||||| ||||||||||| | |||  |||||||||||||||||||||| ||||| |||||||| |       ||| ||||||| |||| |    
T  25315345 aagatgagagatagaggagttgtcaatgctttgaggaacatattgtattgttttcacttgagtcgttgtaattaagttttatcctagatcatgcaactcc 25315246  T
Q  429 atatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatc 479  Q
    ||||| |||||||||  |||||||||||  || ||| ||||||||||||||    
T  25315245 atatgggttttgagtaatttgtagtgag-gaatcatgtaaatcgacaaatc 25315196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 403
Target Start/End: Complemental strand, 47024864 - 47024796
Alignment:
Q  335 agagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    |||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| | || |||||||    
T  47024864 agagatagagtagttgtcaatggtttgaaaaatatattgtattgttttcactcgagccgttctaattca 47024796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 340 - 403
Target Start/End: Original strand, 10576465 - 10576528
Alignment:
Q  340 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    ||||||||||||| ||||| |||| ||||| |||||||||||||| ||||||||||||||||||    
T  10576465 tagagaagttgtccatggtttgaagaacattttgtattgttttcattcgagtcattgtaattca 10576528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 395
Target Start/End: Complemental strand, 5906853 - 5906768
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcatt 395  Q
    |||||||||||||||| | ||||| |||| ||||| | ||||||||||| |||  |||||||| ||||||||||||||||||||||    
T  5906853 tttgcatttgaagacaaacaagatgagagttagaggaattgtcaatggtttgaggaacatattatattgttttcactcgagtcatt 5906768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 403
Target Start/End: Complemental strand, 12111463 - 12111371
Alignment:
Q  311 tttgcatttgaagacagaaagataagagatagagaagttgtcaatggtatgaaaaacatattgta-ttgttttcactcgagtcattgtaattca 403  Q
    |||||||||||||||| |||||| ||| |||||| ||||||||||||| |||  ||||||||||| || ||||||| |||||| ||||||||||    
T  12111463 tttgcatttgaagacaaaaagatgaga-atagaggagttgtcaatggtttgaggaacatattgtattttttttcacacgagtcgttgtaattca 12111371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 477
Target Start/End: Original strand, 15192240 - 15192351
Alignment:
Q  365 aacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacat 464  Q
    ||||||||||||||||||||||| |||  ||||||||||       ||| |||| || | || |||| |||||||||||||||||||||||| ||| |||    
T  15192240 aacatattgtattgttttcactcaagttgttgtaattcacttttatcctagatcgtgcagctccataggtgttttgagtgttttgtagtgag-aaatcat 15192338  T
Q  465 ctaaatcgacaaa 477  Q
     ||||||||||||    
T  15192339 gtaaatcgacaaa 15192351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 311 - 479
Target Start/End: Complemental strand, 34864424 - 34864260
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 409  Q
    |||| ||||||||||| | ||||||| || ||||| ||||||||||||| |||  ||| |||  |||||||||||||||  |||||||||||||          
T  34864424 tttgtatttgaagacaaataagataaaagttagaggagttgtcaatggtttgaggaacgtatcatattgttttcactcg--tcattgtaattcactttta 34864327  T
Q  410 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatc 479  Q
     |||  || ||| |||| |||  |||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  34864326 tcctaaattatgaaactccat--gtgttttgagtgttttgtagtgag-aaatcatgtaaatcgacaaatc 34864260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 403
Target Start/End: Complemental strand, 1676424 - 1676335
Alignment:
Q  315 catttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    |||||||||||| | ||||| | |||||||| ||||||||||||| |||  ||||||||||| |||||||| ||||||  ||||||||||    
T  1676424 catttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaacatattgtaatgttttcattcgagtttttgtaattca 1676335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 403
Target Start/End: Complemental strand, 1682952 - 1682863
Alignment:
Q  315 catttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    |||||||||||| | ||||| | |||||||| ||||||||||||| |||  ||||||||||| |||||||| ||||||  ||||||||||    
T  1682952 catttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaacatattgtaatgttttcattcgagtttttgtaattca 1682863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 9783096 - 9783023
Alignment:
Q  330 agataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    |||| |||| ||||| |||||||||| || |||  ||||||||||||||||||||||| | |||||||||||||    
T  9783096 agatgagagttagaggagttgtcaatagtttgaggaacatattgtattgttttcactcaattcattgtaattca 9783023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 402
Target Start/End: Original strand, 18897973 - 18898065
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattc 402  Q
    |||||||||||||||| | ||| | |||||||||  | ||||||||||| | |  |||||||||||||||||||||||||| | |||||||||    
T  18897973 tttgcatttgaagacaaataagttgagagatagatgatttgtcaatggtttaaggaacatattgtattgttttcactcgagccgttgtaattc 18898065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 459
Target Start/End: Complemental strand, 10320298 - 10320203
Alignment:
Q  364 aaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 459  Q
    |||||||||||||| |||||||||||||| ||||||||||       ||| || |||| |||| |||| ||||||| ||  |||||||||||||||    
T  10320298 aaacatattgtattcttttcactcgagtcgttgtaattcacttttatcctagaccatgcaactccataggtgttttaagctttttgtagtgagaaa 10320203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 311 - 456
Target Start/End: Complemental strand, 21505272 - 21505126
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 409  Q
    |||||||||||||||| | ||||| |||| ||||| ||||||||||||| |||  | |||||||||||||||||||||||||| || ||||| |          
T  21505272 tttgcatttgaagacaaataagatgagagttagagtagttgtcaatggtttgaggagcatattgtattgttttcactcgagtctttataatttactttta 21505173  T
Q  410 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 456  Q
     |||  |||||| |||||| ||  |||||||||||||||||||||||    
T  21505172 tcctaaatcatgcaacttcttagatgttttgagtgttttgtagtgag 21505126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 311 - 455
Target Start/End: Original strand, 30998753 - 30998898
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 409  Q
    ||||| |||||||||| | ||||| |||| ||||  ||||||||||||| |||  |||||||||||||||||||||| ||||| ||||| ||||          
T  30998753 tttgcctttgaagacaaataagatgagagttagatgagttgtcaatggtttgaggaacatattgtattgttttcacttgagtcgttgtacttcagtttta 30998852  T
Q  410 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtga 455  Q
     ||| ||||||  |||| |||| |||||||||||||||||||||||    
T  30998853 tcctagatcatacaactccataggtgttttgagtgttttgtagtga 30998898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 453
Target Start/End: Original strand, 35031703 - 35031827
Alignment:
Q  329 aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttc 428  Q
    ||||| |||||||||| |||||| |||||| |||  |||||||||||||||||||||||||||| |||||| | |       ||| ||||||| || | |    
T  35031703 aagatgagagatagaggagttgttaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaacttacttttatcctagatcatgcaattcc 35031802  T
Q  429 atatgtgttttgagtgttttgtagt 453  Q
    ||| |||||||||||||||||||||    
T  35031803 ataggtgttttgagtgttttgtagt 35031827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 309 - 455
Target Start/End: Complemental strand, 16593887 - 16593738
Alignment:
Q  309 tttttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatga--aaaacatattgtattgttttcactcgagtcattgtaattcann 405  Q
    |||||||||||||||||| | ||||| |||| || || ||||||||||||| |||  || ||||||| ||||||||||||||||||  || |||||||      
T  16593887 tttttgcatttgaagacaaataagattagagttataggagttgtcaatggtttgatgaacacatattatattgttttcactcgagttgttttaattcagt 16593788  T
Q  406 nnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtga 455  Q
         ||| ||||||| |||| |||| ||||| |||||||||||||||||    
T  16593787 tttatcctagatcatgcaactccataggtgttctgagtgttttgtagtga 16593738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 456
Target Start/End: Original strand, 35707785 - 35707931
Alignment:
Q  311 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 409  Q
    |||| ||||||||||| | ||||| |||| ||||||||||||||||||| ||| |||||| |||||||||||||||| || |  ||||||||||          
T  35707785 tttgtatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaacatgttgtattgttttcacttgatttgttgtaattcagtttta 35707884  T
Q  410 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 456  Q
     ||| |||      |||||||| ||||||||||||||||||||||||    
T  35707885 tcctagattgcacgacttcataggtgttttgagtgttttgtagtgag 35707931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 403
Target Start/End: Original strand, 24047394 - 24047457
Alignment:
Q  340 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    ||||||| ||||||||||| | |  ||||| |||||||||||||| ||||||||||||||||||    
T  24047394 tagagaaattgtcaatggtttaaggaacattttgtattgttttcattcgagtcattgtaattca 24047457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 456
Target Start/End: Original strand, 25474023 - 25474165
Alignment:
Q  315 catttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncct 413  Q
    |||||||||||| | ||||| |||| ||||| |||||||||| || |||  ||||||||| |||| |||||||| || |  |||||||||       |||    
T  25474023 catttgaagacaaataagatgagagttagaggagttgtcaattgtttgaggaacatattgaattggtttcactcaagacgctgtaattcagtattatcct 25474122  T
Q  414 ggatcatggaacttcatatgtgttttgagtgttttgtagtgag 456  Q
     ||||||| |||| || | ||||||||| ||||||||||||||    
T  25474123 agatcatgcaactccaaaggtgttttgactgttttgtagtgag 25474165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 403
Target Start/End: Original strand, 1733080 - 1733175
Alignment:
Q  309 tttttgcatttgaagacagaa-agataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    ||||| |||||||||||| |  |||| |||| ||||| |||||||||||   ||| ||||| ||||||||||||||| | ||||| ||||||||||    
T  1733080 ttttttcatttgaagacaaatgagatgagagttagaggagttgtcaatgagttgagaaacaaattgtattgttttcatttgagtcgttgtaattca 1733175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 479
Target Start/End: Complemental strand, 27417290 - 27417228
Alignment:
Q  416 atcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatc 479  Q
    |||||| |||| |||| ||||||| |||||||||||||||| ||| ||| ||||||||||||||    
T  27417290 atcatgcaactccataggtgttttaagtgttttgtagtgag-aaatcatgtaaatcgacaaatc 27417228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 401
Target Start/End: Complemental strand, 21843105 - 21843044
Alignment:
Q  340 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaatt 401  Q
    ||||| ||||| ||||||| | |  ||||| |||||||||||||| ||||||||||||||||    
T  21843105 tagaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatt 21843044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 401
Target Start/End: Complemental strand, 21844732 - 21844671
Alignment:
Q  340 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaatt 401  Q
    ||||| ||||||||||||| | |  ||||| || ||||||||||| ||||||||||||||||    
T  21844732 tagaggagttgtcaatggttttaggaacatgttatattgttttcattcgagtcattgtaatt 21844671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 32276607 - 32276555
Alignment:
Q  349 tgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaatt 401  Q
    |||||||||| |||| ||||| ||| |||||||| | ||||||||||||||||    
T  32276607 tgtcaatggtttgaagaacattttgcattgtttttattcgagtcattgtaatt 32276555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 334 - 459
Target Start/End: Complemental strand, 17860557 - 17860432
Alignment:
Q  334 aagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatg 433  Q
    ||||| ||||||| ||||||||||| |||  ||||| ||||||| ||||||||||||||||||| ||| |       | |  |||||| |||| |||| |    
T  17860557 aagagttagagaatttgtcaatggtttgaggaacattttgtattattttcactcgagtcattgtcatttacttttatcttaaatcatgcaactccatacg 17860458  T
Q  434 tgttttgagtgttttgtagtgagaaa 459  Q
    || |||||||||||||||||||||||    
T  17860457 tgctttgagtgttttgtagtgagaaa 17860432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 13759565 - 13759491
Alignment:
Q  329 aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    ||||| |||| ||||| ||||||||||||| |||  ||||||||| ||||||||||||||| || ||||||||||    
T  13759565 aagatgagagttagaggagttgtcaatggtttgaggaacatattgaattgttttcactcgaatcgttgtaattca 13759491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 403
Target Start/End: Original strand, 30355327 - 30355400
Alignment:
Q  329 aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 403  Q
    ||||| |||| ||||||||||||||||||| ||| |||||||||||||| ||||||||| |||| || |||||||    
T  30355327 aagatgagagttagagaagttgtcaatggtttgataaacatattgtatt-ttttcactcaagtcgttttaattca 30355400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 440
Target Start/End: Original strand, 16527878 - 16528002
Alignment:
Q  317 tttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctgg 415  Q
    |||||||||| | ||||| |||| ||||| |||||||  |||| |||  | |||||| ||||||||||||||||||| ||||||||||       ||| |    
T  16527878 tttgaagacaaataagatgagagttagaggagttgtcggtggtttgagtaccatattatattgttttcactcgagtcgttgtaattcatttttatcctag 16527977  T
Q  416 atcatggaacttcatatgtgttttg 440  Q
    |||||| ||||||||| ||||||||    
T  16527978 atcatgcaacttcataggtgttttg 16528002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 456
Target Start/End: Original strand, 15998599 - 15998639
Alignment:
Q  416 atcatggaacttcatatgtgttttgagtgttttgtagtgag 456  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  15998599 atcatgcaacttcataggtgttttgagtgttttgtagtgag 15998639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 22609481 - 22609538
Alignment:
Q  138 tgttggttttgaatttccgaactattatatccggattttcaaagcctattttaaaaaa 195  Q
    ||||||||||| |||||||||||||| |||  |||||| ||||  |||||||||||||    
T  22609481 tgttggttttggatttccgaactattgtatttggatttccaaattctattttaaaaaa 22609538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 477
Target Start/End: Original strand, 21438 - 21545
Alignment:
Q  369 tattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaa 468  Q
    |||||||||||||||||||||||| ||||||||||       |||  |||||| |||||||||  ||||||| |||||||| ||||||  || ||| |||    
T  21438 tattgtattgttttcactcgagtcgttgtaattcacttttatcctaaatcatgcaacttcataattgttttgggtgttttgcagtgag-gaatcatgtaa 21536  T
Q  469 atcgacaaa 477  Q
    |||||||||    
T  21537 atcgacaaa 21545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 479
Target Start/End: Original strand, 12332 - 12394
Alignment:
Q  416 atcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatc 479  Q
    |||||| |||| |||| |||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  12332 atcatgcaactccataggtgttttgagtgttttgtagtgag-aaatcatgtaaatcgacaaatc 12394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 395
Target Start/End: Complemental strand, 22623 - 22593
Alignment:
Q  365 aacatattgtattgttttcactcgagtcatt 395  Q
    |||||||||||||||||||||||||||||||    
T  22623 aacatattgtattgttttcactcgagtcatt 22593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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