View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_low_73 (Length: 310)

Name: NF0493_low_73
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_low_73
NF0493_low_73
[»] chr1 (1 HSPs)
chr1 (1-222)||(40030361-40030582)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 40030582 - 40030361
Alignment:
Q  1 cgttttaaacgaatttcaaacaggttttagaactgaatcagattttgaaacatagttttacaactggctcagaatattagtgctactttttattgtcata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40030582 cgttttaaacgaatttcaaacaggttttagaactgaatcagattttgaaacacagttttacaactggctcagaatattagtgctactttttattgtcata 40030483  T
Q  101 tgctacattctgaagttcacattcaggactaaacaactgaatttaaagctccacatgctgctcaattcagttctaaactggtttgacaagttgagaacca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40030482 tgctacattctgaagttcacattcaggactaaacaactgaatttaaagctccacatgctgctcaattcagttctaaactggtttgacaagttgagaacca 40030383  T
Q  201 cttaaactaactgtcataaaat 222  Q
    ||||||||||||||||||||||    
T  40030382 cttaaactaactgtcataaaat 40030361  T

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