View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_low_80 (Length: 289)

Name: NF0493_low_80
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_low_80
NF0493_low_80
[»] chr4 (11 HSPs)
chr4 (30-277)||(25844126-25844369)
chr4 (35-131)||(40423324-40423420)
chr4 (73-131)||(11548167-11548225)
chr4 (72-131)||(79525-79584)
chr4 (72-125)||(5244565-5244617)
chr4 (47-128)||(5961769-5961850)
chr4 (70-131)||(11444897-11444957)
chr4 (46-131)||(43115581-43115666)
chr4 (79-130)||(25844390-25844441)
chr4 (74-107)||(19689290-19689323)
chr4 (58-107)||(40421948-40421997)
[»] chr7 (18 HSPs)
chr7 (58-131)||(25690718-25690791)
chr7 (46-131)||(16780773-16780858)
chr7 (35-131)||(41195670-41195766)
chr7 (35-130)||(31726653-31726748)
chr7 (73-131)||(35851974-35852032)
chr7 (61-129)||(45773203-45773271)
chr7 (46-131)||(5721672-5721757)
chr7 (71-131)||(11754696-11754756)
chr7 (77-133)||(48078598-48078654)
chr7 (74-129)||(11329505-11329560)
chr7 (76-133)||(5815121-5815178)
chr7 (72-133)||(22600659-22600720)
chr7 (40-92)||(45773257-45773310)
chr7 (71-131)||(28557249-28557309)
chr7 (60-131)||(101300-101371)
chr7 (149-190)||(30357979-30358020)
chr7 (35-92)||(31726611-31726668)
chr7 (161-190)||(48078705-48078734)
[»] chr3 (8 HSPs)
chr3 (60-131)||(25258079-25258150)
chr3 (45-131)||(12767337-12767423)
chr3 (72-136)||(27177336-27177400)
chr3 (75-128)||(40413445-40413498)
chr3 (47-115)||(5182245-5182313)
chr3 (35-131)||(6588294-6588390)
chr3 (79-131)||(37058992-37059044)
chr3 (91-131)||(54905139-54905179)
[»] chr5 (4 HSPs)
chr5 (56-130)||(896066-896140)
chr5 (58-125)||(18398578-18398645)
chr5 (45-128)||(9962929-9963012)
chr5 (79-131)||(14105979-14106031)
[»] chr8 (13 HSPs)
chr8 (60-131)||(38924402-38924473)
chr8 (60-132)||(8238754-8238826)
chr8 (46-130)||(30370054-30370138)
chr8 (72-131)||(32729430-32729489)
chr8 (77-131)||(34273140-34273194)
chr8 (46-131)||(29204593-29204678)
chr8 (71-121)||(36203388-36203438)
chr8 (74-131)||(9030606-9030663)
chr8 (77-122)||(14178904-14178949)
chr8 (61-130)||(33357365-33357434)
chr8 (45-133)||(559942-560030)
chr8 (99-131)||(33435410-33435442)
chr8 (71-131)||(33542104-33542163)
[»] chr1 (10 HSPs)
chr1 (74-132)||(1831257-1831315)
chr1 (35-128)||(34062626-34062719)
chr1 (48-131)||(25484937-25485020)
chr1 (60-131)||(34123183-34123254)
chr1 (70-127)||(42826424-42826480)
chr1 (77-128)||(5760058-5760109)
chr1 (76-131)||(24603070-24603125)
chr1 (99-133)||(9450238-9450272)
chr1 (71-116)||(768312-768357)
chr1 (85-133)||(32191156-32191204)
[»] chr2 (11 HSPs)
chr2 (62-131)||(12670772-12670841)
chr2 (46-131)||(33710566-33710651)
chr2 (75-131)||(21488865-21488921)
chr2 (76-131)||(15538954-15539009)
chr2 (71-132)||(14442111-14442172)
chr2 (76-128)||(11279985-11280037)
chr2 (35-107)||(23465779-23465851)
chr2 (76-131)||(28314674-28314729)
chr2 (73-128)||(37172605-37172660)
chr2 (47-121)||(7152082-7152156)
chr2 (47-131)||(4422823-4422907)
[»] scaffold0110 (1 HSPs)
scaffold0110 (64-128)||(31409-31473)
[»] chr6 (3 HSPs)
chr6 (58-130)||(33617651-33617723)
chr6 (69-131)||(22682570-22682633)
chr6 (47-131)||(32820778-32820862)
[»] scaffold0223 (1 HSPs)
scaffold0223 (71-128)||(16329-16386)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 277
Target Start/End: Complemental strand, 25844369 - 25844126
Alignment:
Q  30 cttctctcacgctcagcatttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaag 129  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25844369 cttctctcacgctcatcatttttcagtttgagttaactcatgctgacacttttaagattgattcaatcgctttttaagccggttcaaccgatcttaaaag 25844270  T
Q  130 tgccggcttctcacgctgaattaagggatttaataattttaaaagggagaagaacaatttttatcgagaatagctatttgagctaaagttgcccaacata 229  Q
    ||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25844269 tgcca----ctcacgctgaattaagggatttaataattttaaaagggagaagaacaatttttatcgagaatagctatttgagctaaagttgcccaacata 25844174  T
Q  230 ctcaaattcttaaccatgcaagggtaagaagctaggtatcatggttca 277  Q
    |||||||||| |||||||||||||||||||||||||||| | ||||||    
T  25844173 ctcaaattctcaaccatgcaagggtaagaagctaggtattacggttca 25844126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 131
Target Start/End: Complemental strand, 40423420 - 40423324
Alignment:
Q  35 ctcacgctcagcatttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    |||||||||||||||||| ||  ||| |||||| | ||||||| ||||||||| ||||||||| ||||||||| |||||||||  ||||||||||||    
T  40423420 ctcacgctcagcatttttaagcgtgaattaactcacgctgacaattttaagatcggttcaatcactttttaagtcggttcaacaaatcttaaaagtg 40423324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 11548225 - 11548167
Alignment:
Q  73 tgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||||||||| |||||| |||||||||||| |||||| |||||| |||||||||    
T  11548225 tgacacttttaagatcggttcattcgctttttaagtcggttcgaccgatgttaaaagtg 11548167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 79584 - 79525
Alignment:
Q  72 ctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||||| |||| ||||||||| ||||||||| ||| ||||| |||||||||||||    
T  79584 ctgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 79525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 5244565 - 5244617
Alignment:
Q  72 ctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatctta 125  Q
    |||||| ||||||||||||||||||||| ||||||| | |||||||||||||||    
T  5244565 ctgacatttttaagattggttcaatcgc-ttttaagtcagttcaaccgatctta 5244617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 5961769 - 5961850
Alignment:
Q  47 atttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaa 128  Q
    |||||| |||| |||||||||| |  || ||||||||||||  |||||||| |||||||||  || ||||||||||||||||    
T  5961769 attttttagttagagttaacttctattggcacttttaagatcagttcaatcactttttaagttggctcaaccgatcttaaaa 5961850  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 11444897 - 11444957
Alignment:
Q  70 tgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    |||||||||||||||||| |||||| |||||||||||| | |||| |||||| |||||||||    
T  11444897 tgctgacacttttaagatcggttcattcgctttttaagtc-gttcgaccgatgttaaaagtg 11444957  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 43115581 - 43115666
Alignment:
Q  46 catttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||||  |||||||||| |  |||||||||||||||| ||||||||   |||||||| |||||||||| | |||| |||||    
T  43115581 catttttcagcgtgagttaactcacactgacacttttaagatcggttcaataattttttaagtcggttcaaccaaccttagaagtg 43115666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 25844441 - 25844390
Alignment:
Q  79 ttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagt 130  Q
    ||||||||||||||||||  |||||||||||| ||||||| || ||||||||    
T  25844441 ttttaagattggttcaataactttttaagccgtttcaaccaattttaaaagt 25844390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 107
Target Start/End: Complemental strand, 19689323 - 19689290
Alignment:
Q  74 gacacttttaagattggttcaatcgctttttaag 107  Q
    |||||||||||||||||||||||| |||||||||    
T  19689323 gacacttttaagattggttcaatcactttttaag 19689290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 40421997 - 40421948
Alignment:
Q  58 tgagttaacttatgctgacacttttaagattggttcaatcgctttttaag 107  Q
    |||||||||| |  ||||||||||||||||| |||||||| |||||||||    
T  40421997 tgagttaactcacactgacacttttaagattagttcaatcactttttaag 40421948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 25690718 - 25690791
Alignment:
Q  58 tgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    |||||||||| | |||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||    
T  25690718 tgagttaactcacgctgacactttttagatcggttcaatcactttttaagccggttcaaccgatcttaaaagtg 25690791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 16780858 - 16780773
Alignment:
Q  46 catttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||||  |||||||||||| || | |||||||||||| ||||||||| ||||||||| || ||||||||||||||||||||    
T  16780858 catttttcagcatgagttaacttacgcgggcacttttaagatcggttcaatcactttttaagtcgattcaaccgatcttaaaagtg 16780773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 41195670 - 41195766
Alignment:
Q  35 ctcacgctcagcatttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||| |||||||| ||  | |||||||| | ||||||||||||||| ||| ||||||| |||||||||| |||||||| |||||||||||||    
T  41195670 ctcacgctcggcattttttagcgttagttaactcacgctgacacttttaaggttgattcaatcactttttaagctggttcaactgatcttaaaagtg 41195766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 130
Target Start/End: Complemental strand, 31726748 - 31726653
Alignment:
Q  35 ctcacgctcagcatttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagt 130  Q
    |||||||||  ||||||||||  | ||||||||||  || ||||||||||| | |||||||||   ||||||||||||||||||||||||||||||    
T  31726748 ctcacgctcgacatttttcagcataagttaacttacactaacacttttaagttcggttcaatcatattttaagccggttcaaccgatcttaaaagt 31726653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 35852032 - 35851974
Alignment:
Q  73 tgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||||||||| ||||||||| |||| |||| |||||||||||||||||||||||    
T  35852032 tgacacttttaagatcggttcaatcactttctaagtcggttcaaccgatcttaaaagtg 35851974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 45773203 - 45773271
Alignment:
Q  61 gttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaag 129  Q
    ||||||| | |||||||||||| |||| ||||||||| ||||||| |||||||||||| ||||||||||    
T  45773203 gttaactcacgctgacactttttagatcggttcaatcactttttacgccggttcaaccaatcttaaaag 45773271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 5721672 - 5721757
Alignment:
Q  46 catttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    |||||||||||| ||||||||| | | ||| ||||||||||| | ||||||  ||||| ||  |||||||||||||||||||||||    
T  5721672 catttttcagttagagttaactcacgatgagacttttaagatcgattcaattacttttcaaatcggttcaaccgatcttaaaagtg 5721757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 11754756 - 11754696
Alignment:
Q  71 gctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||||||||||| ||||||||| |||||||   |||||||||| ||||||||||||    
T  11754756 gctgacacttttaagatcggttcaatcactttttatctcggttcaaccaatcttaaaagtg 11754696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 48078598 - 48078654
Alignment:
Q  77 acttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtgcc 133  Q
    |||||||||||   ||||||| ||||||||| |||||||||||||||||||||||||    
T  48078598 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgcc 48078654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 11329505 - 11329560
Alignment:
Q  74 gacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaag 129  Q
    |||||||||||||||| ||| ||| ||||||||| ||||| |||||||||||||||    
T  11329505 gacacttttaagattgattcgatcactttttaagtcggtttaaccgatcttaaaag 11329560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 5815178 - 5815121
Alignment:
Q  76 cacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtgcc 133  Q
    ||||||| | |||||||||||| ||||||||| | | |||||||||||||||||||||    
T  5815178 cactttttaaattggttcaatcactttttaagtcaggtcaaccgatcttaaaagtgcc 5815121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 22600659 - 22600720
Alignment:
Q  72 ctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtgcc 133  Q
    |||||| ||||||||| | ||||||  |||||||||||||||||||| ||||||| ||||||    
T  22600659 ctgacatttttaagatcgattcaattactttttaagccggttcaaccaatcttaatagtgcc 22600720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 45773310 - 45773257
Alignment:
Q  40 gctcagcatttttcagtttgagtt-aacttatgctgacacttttaagattggtt 92  Q
    |||| |||||||||||| |||||| ||||||||||||| |||||||||||||||    
T  45773310 gctcggcatttttcagtgtgagtttaacttatgctgacgcttttaagattggtt 45773257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 28557309 - 28557249
Alignment:
Q  71 gctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||||||||||| |||||||||   |||||| || ||||||| |||||||||||||    
T  28557309 gctgacacttttaagatcggttcaatcatattttaacccagttcaactgatcttaaaagtg 28557249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 101371 - 101300
Alignment:
Q  60 agttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    |||||||| |||||  ||||||| ||||  |||||||| ||||||||| | | |||||||||||||||||||    
T  101371 agttaactcatgctagcactttttagatcagttcaatcactttttaagtcaggtcaaccgatcttaaaagtg 101300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 30357979 - 30358020
Alignment:
Q  149 attaagggatttaataattttaaaagggagaagaacaatttt 190  Q
    ||||||||| | || |||||||||||||||||||||||||||    
T  30357979 attaagggaatgaaaaattttaaaagggagaagaacaatttt 30358020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 31726611 - 31726668
Alignment:
Q  35 ctcacgctcagcatttttcagtttgagttaacttatgctgacacttttaagattggtt 92  Q
    |||| ||||||||||||||||  ||||| |||| ||||||| ||||||||||| ||||    
T  31726611 ctcatgctcagcatttttcagcgtgagtgaactcatgctgatacttttaagatcggtt 31726668  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 190
Target Start/End: Original strand, 48078705 - 48078734
Alignment:
Q  161 aataattttaaaagggagaagaacaatttt 190  Q
    ||||||||||||||||||||||||||||||    
T  48078705 aataattttaaaagggagaagaacaatttt 48078734  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 25258150 - 25258079
Alignment:
Q  60 agttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||  ||||||||||||||||||  |||||||| ||||||||| |||||||||||||||||||||||    
T  25258150 agttaactgttgctgacacttttaagatcagttcaatcactttttaagtcggttcaaccgatcttaaaagtg 25258079  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 12767423 - 12767337
Alignment:
Q  45 gcatttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||||  ||||||||||| | ||| ||||||||||||| | ||||||| ||||||||| ||| ||||||||||||| |||||    
T  12767423 gcatttttcaacttgagttaactcacgctaacacttttaagatcgtttcaatcactttttaagtcggatcaaccgatcttagaagtg 12767337  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 27177336 - 27177400
Alignment:
Q  72 ctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtgccggc 136  Q
    ||||||||||| |||| |||||||||  ||||||||  || ||||||||||||||||||| ||||    
T  27177336 ctgacactttttagatcggttcaatcattttttaagttgggtcaaccgatcttaaaagtgtcggc 27177400  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 40413498 - 40413445
Alignment:
Q  75 acacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaa 128  Q
    ||||| || |||| ||||||||| ||||||||| ||| ||||||||||||||||    
T  40413498 acactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 40413445  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 5182313 - 5182245
Alignment:
Q  47 atttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttca 115  Q
    |||||| ||| ||| |||||| | ||||||||||||| |||  ||||||||  ||||||||||||||||    
T  5182313 attttttagtgtgatttaactcacgctgacacttttatgatcagttcaatcaatttttaagccggttca 5182245  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 6588294 - 6588390
Alignment:
Q  35 ctcacgctcagcatttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||  |||||||||||    |||||||| | ||||||||||||  ||| ||||||| |   ||||||| ||| |||||||||||||||||||    
T  6588294 ctcacgcttggcatttttcagcagtagttaactcacgctgacacttttttgatcggttcaaacatgttttaagtcgggtcaaccgatcttaaaagtg 6588390  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 37059044 - 37058992
Alignment:
Q  79 ttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||| | |||||||  |||||||| || ||||||||||||||||||||    
T  37059044 ttttaagatcgattcaatcattttttaagtcgattcaaccgatcttaaaagtg 37058992  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 54905139 - 54905179
Alignment:
Q  91 ttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||| ||||||||| ||||| |||||||||||||||||    
T  54905139 ttcaatcactttttaagtcggtttaaccgatcttaaaagtg 54905179  T

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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 896066 - 896140
Alignment:
Q  56 tttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagt 130  Q
    ||||||||||||||||||||| ||| ||| |||||||||||| |||||||| |||||||||  ||||||||||||    
T  896066 tttgagttaacttatgctgacgcttgtaaaattggttcaatcactttttaaaccggttcaattgatcttaaaagt 896140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 18398645 - 18398578
Alignment:
Q  58 tgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatctta 125  Q
    ||||||||||||  |||||||||||||||| |||||| || |||||||| ||||||||||||||||||    
T  18398645 tgagttaacttacactgacacttttaagatcggttcattcactttttaaaccggttcaaccgatctta 18398578  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 9963012 - 9962929
Alignment:
Q  45 gcatttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaa 128  Q
    |||||||||||  | |||||||| |   ||||||||||||||||| ||||||| ||||| || | |||||||||||||||||||    
T  9963012 gcatttttcagcgtaagttaactcacaatgacacttttaagattgattcaatcacttttcaatctggttcaaccgatcttaaaa 9962929  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 14106031 - 14105979
Alignment:
Q  79 ttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||| ||||||||| |||||||||  ||||  ||||||||||||||||    
T  14106031 ttttaagatcggttcaatcactttttaagttggtttgaccgatcttaaaagtg 14105979  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 38924402 - 38924473
Alignment:
Q  60 agttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||  ||||| |||||||||||| ||||||||| ||||||||| ||||||||| |||||||||||||    
T  38924402 agttaactcgtgctggcacttttaagatcggttcaatcactttttaagtcggttcaactgatcttaaaagtg 38924473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 8238754 - 8238826
Alignment:
Q  60 agttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtgc 132  Q
    |||||||| | |||||||||||| ||||  |||||||| |||||| || ||| ||||||||||||||||||||    
T  8238754 agttaactcacgctgacactttttagatcagttcaatcacttttttagtcggatcaaccgatcttaaaagtgc 8238826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 30370138 - 30370054
Alignment:
Q  46 catttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagt 130  Q
    ||||||||| || |||||||||  ||||| ||| |||| ||| ||||||||| |||||||||  |||||||||||| ||||||||    
T  30370138 catttttcatttggagttaactcctgctggcacatttatgatcggttcaatcactttttaagttggttcaaccgattttaaaagt 30370054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 32729430 - 32729489
Alignment:
Q  72 ctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||||||||||  |||||||   |||||||| |||||||||||||||||||||||    
T  32729430 ctgacacttttaagatcagttcaattattttttaagtcggttcaaccgatcttaaaagtg 32729489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 34273194 - 34273140
Alignment:
Q  77 acttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||||| ||||||||| || |||||| ||||||||||||| |||||||||    
T  34273194 acttttaagatcggttcaatcactgtttaagtcggttcaaccgattttaaaagtg 34273140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 29204593 - 29204678
Alignment:
Q  46 catttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||||| |||||||| | | |||   |||||||| || ||||||||| ||||||||| ||| ||||| |||||||||||||    
T  29204593 catttttcagtgtgagttaattcacgctagtacttttaaaatcggttcaatcactttttaagtcggatcaactgatcttaaaagtg 29204678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 36203438 - 36203388
Alignment:
Q  71 gctgacacttttaagattggttcaatcgctttttaagccggttcaaccgat 121  Q
    |||||||||||||||||||  |||||| |||| |||| |||||||||||||    
T  36203438 gctgacacttttaagattgactcaatcactttataagtcggttcaaccgat 36203388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 9030606 - 9030663
Alignment:
Q  74 gacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    |||||||||||||| | ||||||| ||||||||  ||||||||  |||||||||||||    
T  9030606 gacacttttaagatcgattcaatcactttttaaatcggttcaattgatcttaaaagtg 9030663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 14178949 - 14178904
Alignment:
Q  77 acttttaagattggttcaatcgctttttaagccggttcaaccgatc 122  Q
    ||||||||||||||||||||| ||||||| | ||| ||||||||||    
T  14178949 acttttaagattggttcaatcactttttatgtcggctcaaccgatc 14178904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 33357434 - 33357365
Alignment:
Q  61 gttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagt 130  Q
    ||||||| ||| || |||||||||||||||||||||   ||||||| |||||| ||| ||| ||||||||    
T  33357434 gttaactcatgttgccacttttaagattggttcaattattttttaaaccggtttaactgattttaaaagt 33357365  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 559942 - 560030
Alignment:
Q  45 gcatttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtgcc 133  Q
    |||||||||||  |||||||||| | ||||||| ||||||||  | ||||||   ||||||||  |||||||||||| |||||| ||||    
T  559942 gcatttttcagcgtgagttaactcacgctgacatttttaagaccgattcaattattttttaagttggttcaaccgattttaaaattgcc 560030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 33435442 - 33435410
Alignment:
Q  99 ctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||| |||||||||||||||||||||||    
T  33435442 ctttttaagtcggttcaaccgatcttaaaagtg 33435410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 33542163 - 33542104
Alignment:
Q  71 gctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    |||||| ||||||||||| ||||| ||  |||||||| || ||||||||||||||||||||    
T  33542163 gctgacccttttaagattagttcagtcattttttaagtcg-ttcaaccgatcttaaaagtg 33542104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 1831315 - 1831257
Alignment:
Q  74 gacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtgc 132  Q
    |||||||||||||| |||| |||||||||||||| ||||||||| ||||||||||||||    
T  1831315 gacacttttaagatcggtttaatcgctttttaagtcggttcaactgatcttaaaagtgc 1831257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 128
Target Start/End: Original strand, 34062626 - 34062719
Alignment:
Q  35 ctcacgctcagcatttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaa 128  Q
    |||||||||| ||||||||||  ||||| |||| | |||||||||||||| || ||||||||| ||||||||| || |||||| ||| ||||||    
T  34062626 ctcacgctcaacatttttcagcgtgagtgaactcacgctgacacttttaaaatcggttcaatcactttttaagtcgtttcaactgattttaaaa 34062719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 25484937 - 25485020
Alignment:
Q  48 tttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||| |||||||| ||| |||| ||||||||||||   ||||||| |||||||||||  ||||| ||||||||||||||    
T  25484937 tttttcagtgtgagttaatttacgctggcacttttaagatcaattcaatcactttttaagccaattcaaacgatcttaaaagtg 25485020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 34123254 - 34123183
Alignment:
Q  60 agttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||||||||| ||||||||| ||    |||||| |||||||||| |||||||||||| |||||||||    
T  34123254 agttaacttatgctggcacttttaatatcaactcaatcactttttaagctggttcaaccgattttaaaagtg 34123183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 42826480 - 42826424
Alignment:
Q  70 tgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaa 127  Q
    ||||||||||||||||| |||||||||| ||||||||| ||||| |||| ||||||||    
T  42826480 tgctgacacttttaaga-tggttcaatcactttttaagtcggtttaaccaatcttaaa 42826424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 5760058 - 5760109
Alignment:
Q  77 acttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaa 128  Q
    ||||||||||| | ||||||| ||||||||| || |||||||||||||||||    
T  5760058 acttttaagatcgcttcaatcactttttaagtcgcttcaaccgatcttaaaa 5760109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 24603125 - 24603070
Alignment:
Q  76 cacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    |||||||||||| |||||| |   ||||||||| ||||||||||||||||||||||    
T  24603125 cacttttaagatcggttcactaattttttaagctggttcaaccgatcttaaaagtg 24603070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 9450238 - 9450272
Alignment:
Q  99 ctttttaagccggttcaaccgatcttaaaagtgcc 133  Q
    ||||||||| |||||||||||||||||||||||||    
T  9450238 ctttttaagtcggttcaaccgatcttaaaagtgcc 9450272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 768357 - 768312
Alignment:
Q  71 gctgacacttttaagattggttcaatcgctttttaagccggttcaa 116  Q
    |||||||||||||||||  |||||||| ||||||||| ||||||||    
T  768357 gctgacacttttaagatcagttcaatcactttttaagtcggttcaa 768312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 32191204 - 32191156
Alignment:
Q  85 gattggttcaatcgctttttaagccggttcaaccgatcttaaaagtgcc 133  Q
    |||| ||||||||  ||||||||  ||||||||||||||||||||||||    
T  32191204 gattagttcaatcattttttaagttggttcaaccgatcttaaaagtgcc 32191156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 12670772 - 12670841
Alignment:
Q  62 ttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    |||||| | ||||||||||||||||| |||||||||  |||||||||||  |||||||||||||||||||    
T  12670772 ttaactcacgctgacacttttaagatcggttcaatcaatttttaagccgactcaaccgatcttaaaagtg 12670841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 33710566 - 33710651
Alignment:
Q  46 catttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||||  |||||||||||| ||||||||||||||||| |||||||||  ||| ||| ||| ||||| | ||||||||||||    
T  33710566 catttttcagcgtgagttaacttacgctgacacttttaagatcggttcaatcattttctaaaccgattcaaacaatcttaaaagtg 33710651  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 21488865 - 21488921
Alignment:
Q  75 acacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||||||| |||||||||  |||||||| | |||||||||||||||||||||    
T  21488865 acacttttaagatcggttcaatcattttttaagtcagttcaaccgatcttaaaagtg 21488921  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 15538954 - 15539009
Alignment:
Q  76 cacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    |||||||||||| ||||||||  ||||||||| |||||||| ||||||||||||||    
T  15538954 cacttttaagatcggttcaattactttttaagtcggttcaatcgatcttaaaagtg 15539009  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 14442111 - 14442172
Alignment:
Q  71 gctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtgc 132  Q
    |||||||||||||||||  || ||||| |||||||||||| |||||| ||||||||| ||||    
T  14442111 gctgacacttttaagatcagtacaatcactttttaagccgattcaactgatcttaaaggtgc 14442172  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 11280037 - 11279985
Alignment:
Q  76 cacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaa 128  Q
    ||||||||| ||||| |||||| ||||||||| ||||||||||||| ||||||    
T  11280037 cacttttaaaattggatcaatcactttttaagtcggttcaaccgattttaaaa 11279985  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 23465851 - 23465779
Alignment:
Q  35 ctcacgctcagcatttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaag 107  Q
    |||| |||| |||||||||||  | |||||||||| | ||||||||||||||| ||||||||  |||||||||    
T  23465851 ctcatgctcggcatttttcagcgtaagttaacttacgatgacacttttaagatcggttcaattactttttaag 23465779  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 28314729 - 28314674
Alignment:
Q  76 cacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    |||||||||||| ||||||||| ||||||||   |||| |||||||||||||||||    
T  28314729 cacttttaagatcggttcaatcactttttaaattggttgaaccgatcttaaaagtg 28314674  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 37172660 - 37172605
Alignment:
Q  73 tgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaa 128  Q
    |||||||||||| || ||||||||| ||||||||| | |||||||| |||||||||    
T  37172660 tgacacttttaacatcggttcaatcactttttaagtcagttcaaccaatcttaaaa 37172605  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 7152082 - 7152156
Alignment:
Q  47 atttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgat 121  Q
    |||||||||  |||||||||| | | | |||||||||| || ||||||||  |||||||| ||||||||||||||    
T  7152082 atttttcagcgtgagttaactcacgttaacacttttaatatcggttcaattactttttaaaccggttcaaccgat 7152156  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 4422907 - 4422823
Alignment:
Q  47 atttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||||   |||||||| | || | ||||||| |||| || |||||| ||||||||| ||  |||||||||||||||||||    
T  4422907 atttttcagtgatagttaactcacgccgtcactttttagatcggctcaatcactttttaagtcgaatcaaccgatcttaaaagtg 4422823  T

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Target: scaffold0110 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 31473 - 31409
Alignment:
Q  64 aacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaa 128  Q
    ||||||||||| |||||||||||| || |||||| |||||||||| ||||||||| |||||||||    
T  31473 aacttatgctggcacttttaagatcggctcaatcactttttaagctggttcaaccaatcttaaaa 31409  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 33617651 - 33617723
Alignment:
Q  58 tgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagt 130  Q
    |||||||||| | ||||||| ||||||||| ||||||||| |||  ||| ||||||||| |||||||||||||    
T  33617651 tgagttaactcacgctgacatttttaagatcggttcaatcacttgctaatccggttcaatcgatcttaaaagt 33617723  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 22682570 - 22682633
Alignment:
Q  69 atgctgacacttttaagattg-gttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    |||||||||||||||||||   ||||||||  ||||||||  ||||||||||||||||||||||    
T  22682570 atgctgacacttttaagatcctgttcaatcattttttaagttggttcaaccgatcttaaaagtg 22682633  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 32820778 - 32820862
Alignment:
Q  47 atttttcagtttgagttaacttatgctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaagtg 131  Q
    ||||||||||| |||||||||    |||||||| ||||||| ||||||  | |||||||||  |||||||| ||| |||||||||    
T  32820778 atttttcagttagagttaactcccactgacactattaagatcggttcagacactttttaagttggttcaactgatgttaaaagtg 32820862  T

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Target: scaffold0223 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 16329 - 16386
Alignment:
Q  71 gctgacacttttaagattggttcaatcgctttttaagccggttcaaccgatcttaaaa 128  Q
    |||| |||||||||||  ||||||||  ||||||||  ||||||||||||||||||||    
T  16329 gctgtcacttttaagaccggttcaattactttttaaatcggttcaaccgatcttaaaa 16386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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