View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_87 (Length: 277)
Name: NF0493_low_87
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_87 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 15488723 - 15488567
Alignment:
| Q |
3 |
gaagcttctaagggttgatatgaactcatctccttactatcaaccatatatgaatcctcttcccatgaactatagaccttgtgaatataattgccaatat |
102 |
Q |
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| T |
15488723 |
gaagcttctaagggttgatatgaactcatctccttactatcaaccacatatgaatcctcttcccatgaactatagaccttgtgaatataattgccaatat |
15488624 |
T |
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| Q |
103 |
taaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataatct |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15488623 |
taaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataatct |
15488567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 15449848 - 15449690
Alignment:
| Q |
1 |
ctgaagcttctaagggttgatatgaactcatctccttactatcaaccatatatgaatcctcttcccatgaactatagaccttgtgaatataattgccaat |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15449848 |
ctgaaacttctaagggttgatatgaactcatctccttactatcaaccatatatgaatcctcttcccatgaactatagaccttgtgaatataatttccaat |
15449749 |
T |
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| Q |
101 |
attaaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataatct |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15449748 |
attaaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataatct |
15449690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 15430328 - 15430172
Alignment:
| Q |
3 |
gaagcttctaagggttgatatgaactcatctccttactatcaaccatatatgaatcctcttcccatgaactatagaccttgtgaatataattgccaatat |
102 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15430328 |
gaagcttctaagggttgatatgaattcatctccttactatcaaccacatatgaatcctcttcccatgaactatagaccttgtgaatataattgccaatat |
15430229 |
T |
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| Q |
103 |
taaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataatct |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15430228 |
taaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataatct |
15430172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 16943419 - 16943261
Alignment:
| Q |
1 |
ctgaagcttctaagggttgatatgaactcatctccttactatcaaccatatatgaatcctcttcccatgaactatagaccttgtgaatataattgccaat |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |
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| T |
16943419 |
ctgaagcttctacgggttgatatgaactcatctccttactatcaaccatatatgaatcctcttcccttgaactatagaccttgtgaatataatcgacaat |
16943320 |
T |
|
| Q |
101 |
attaaataaatactcatcattatcaacctttttcaaagcttcctcatcttcaataatct |
159 |
Q |
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||||||||| |||||||||| |||||| | |||||||||||||||||||||||||||| |
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|
| T |
16943319 |
attaaataattactcatcatcatcaactatcttcaaagcttcctcatcttcaataatct |
16943261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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