View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0493_low_9 (Length: 510)

Name: NF0493_low_9
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0493_low_9
NF0493_low_9
[»] chr1 (14 HSPs)
chr1 (29-485)||(25266301-25266766)
chr1 (309-477)||(26657458-26657626)
chr1 (309-457)||(50047163-50047312)
chr1 (338-457)||(30675496-30675615)
chr1 (309-457)||(11769978-11770127)
chr1 (309-454)||(8247644-8247790)
chr1 (309-440)||(12423915-12424047)
chr1 (333-401)||(12810329-12810397)
chr1 (309-400)||(21451857-21451948)
chr1 (367-477)||(25727874-25727983)
chr1 (367-477)||(25736282-25736391)
chr1 (338-401)||(34381720-34381783)
chr1 (367-477)||(25730536-25730645)
chr1 (338-399)||(25494521-25494582)
[»] chr5 (17 HSPs)
chr5 (309-457)||(24841735-24841884)
chr5 (314-451)||(18222480-18222618)
chr5 (344-477)||(16634064-16634196)
chr5 (309-457)||(25594676-25594825)
chr5 (309-451)||(12340004-12340147)
chr5 (344-454)||(15205661-15205771)
chr5 (309-401)||(24517336-24517429)
chr5 (307-385)||(17382091-17382170)
chr5 (333-453)||(26330055-26330176)
chr5 (327-384)||(11274387-11274445)
chr5 (349-401)||(25680619-25680671)
chr5 (344-401)||(7742909-7742966)
chr5 (345-401)||(24268574-24268630)
chr5 (345-401)||(24345203-24345259)
chr5 (346-401)||(20694660-20694715)
chr5 (414-458)||(11997877-11997921)
chr5 (421-457)||(22754989-22755025)
[»] chr3 (13 HSPs)
chr3 (333-457)||(13911272-13911396)
chr3 (363-453)||(2729606-2729696)
chr3 (344-390)||(18065834-18065880)
chr3 (344-401)||(12409476-12409533)
chr3 (309-401)||(33914602-33914695)
chr3 (363-457)||(27415208-27415299)
chr3 (327-401)||(1475320-1475394)
chr3 (363-454)||(25883140-25883231)
chr3 (348-457)||(11474868-11474977)
chr3 (309-457)||(21017859-21018008)
chr3 (338-401)||(8402590-8402653)
chr3 (364-401)||(4780727-4780764)
chr3 (363-452)||(4775696-4775785)
[»] chr8 (13 HSPs)
chr8 (309-454)||(13081924-13082070)
chr8 (309-454)||(29047306-29047449)
chr8 (309-477)||(16052242-16052410)
chr8 (309-400)||(28901381-28901473)
chr8 (309-401)||(14977146-14977240)
chr8 (309-401)||(12956471-12956564)
chr8 (309-454)||(16054276-16054422)
chr8 (313-457)||(32239273-32239418)
chr8 (335-401)||(28902098-28902164)
chr8 (363-453)||(5570129-5570219)
chr8 (309-388)||(6358680-6358760)
chr8 (364-401)||(35135462-35135499)
chr8 (369-401)||(24584764-24584796)
[»] chr7 (11 HSPs)
chr7 (309-454)||(22067791-22067939)
chr7 (333-449)||(1255205-1255321)
chr7 (309-401)||(29544501-29544594)
chr7 (344-477)||(7142116-7142248)
chr7 (310-453)||(7815306-7815450)
chr7 (343-397)||(21545843-21545897)
chr7 (313-401)||(23124886-23124975)
chr7 (335-390)||(9066141-9066196)
chr7 (327-401)||(315186-315260)
chr7 (338-477)||(20470775-20470913)
chr7 (309-392)||(20446221-20446305)
[»] chr4 (13 HSPs)
chr4 (310-401)||(27302761-27302853)
chr4 (327-477)||(25315196-25315345)
chr4 (333-401)||(47024796-47024864)
chr4 (338-401)||(10576465-10576528)
chr4 (309-393)||(5906768-5906853)
chr4 (309-401)||(12111371-12111463)
chr4 (363-475)||(15192240-15192351)
chr4 (309-477)||(34864260-34864424)
chr4 (313-401)||(1676335-1676424)
chr4 (313-401)||(1682863-1682952)
chr4 (328-401)||(9783023-9783096)
chr4 (309-400)||(18897973-18898065)
chr4 (362-457)||(10320203-10320298)
[»] chr2 (12 HSPs)
chr2 (309-454)||(21505126-21505272)
chr2 (309-453)||(30998753-30998898)
chr2 (327-451)||(35031703-35031827)
chr2 (307-453)||(16593738-16593887)
chr2 (309-454)||(35707785-35707931)
chr2 (338-401)||(24047394-24047457)
chr2 (313-454)||(25474023-25474165)
chr2 (307-401)||(1733080-1733175)
chr2 (414-477)||(27417228-27417290)
chr2 (338-399)||(21843044-21843105)
chr2 (338-399)||(21844671-21844732)
chr2 (347-399)||(32276555-32276607)
[»] chr6 (6 HSPs)
chr6 (332-457)||(17860432-17860557)
chr6 (327-401)||(13759491-13759565)
chr6 (327-401)||(30355327-30355400)
chr6 (315-438)||(16527878-16528002)
chr6 (414-454)||(15998599-15998639)
chr6 (138-195)||(22609481-22609538)
[»] scaffold0171 (1 HSPs)
scaffold0171 (367-475)||(21438-21545)
[»] scaffold0065 (1 HSPs)
scaffold0065 (414-477)||(12332-12394)
[»] scaffold0282 (1 HSPs)
scaffold0282 (363-393)||(22593-22623)


Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 29 - 485
Target Start/End: Complemental strand, 25266766 - 25266301
Alignment:
Q  29 aaaaattacatattattttaaaggtttaatagttcaaattaacttnnnnnnnnnnnncacaaaatctaaaaaataacatgacggaattacaactgttcca 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||| ||||||    
T  25266766 aaaaattacatattattttaaaggtttaatagttcaaattaactttatatata----cacaaaatctaaaaaataacatgacggaattacaaccgttcca 25266671  T
Q  129 tcttaaaaatgttggttttgaatttccgaactattatatccggattttcaaagcctattttaaaaaagaagnnnnnnnnatttactgaagctataattgg 228  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||        || |||| ||||||||| |||    
T  25266670 tcttaaaaatgttggttttaaatttccaaactattatatccggattttcaaagcctattttaaaaaagaagttttttttatctacttaagctataactgg 25266571  T
Q  229 attgagtcacgatcaaatcactctctttaaaacatttcatggtactgatgacatagcatatgacattttttggttatgtt-------------tttgcat 315  Q
     |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||             |||||||    
T  25266570 gttgagtcacgatcagatcactctctttaaaacatttcaaggtactgatgacatagcatatgacattttttggttatgtttttagtacttttctttgcat 25266471  T
Q  316 ttgaagacagaaagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       | |||||    
T  25266470 ttgaagacagaaagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcatttttatcttggat 25266371  T
Q  416 catggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatcgtgacatc 485  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||    
T  25266370 catggaacttcatatgtgttttgagtgttttgtagtgagaaaagcatccaaatcgactaatcgtgacatc 25266301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 309 - 477
Target Start/End: Original strand, 26657458 - 26657626
Alignment:
Q  309 tttgcatttgaagacagaaa-gataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 407  Q
    |||||||||||||||| | | | | |||||||||| ||||||||||||| |||  || ||| |||||||||||||||||| || ||||||||||          
T  26657458 tttgcatttgaagacaaatatgttgagagatagaggagttgtcaatggtttgaggaatataatgtattgttttcactcgattcgttgtaattcactttta 26657557  T
Q  408 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatc 477  Q
     ||| ||||| | |||| |||| ||||||||||||||||||||||| |||| ||| ||||||||||||||    
T  26657558 tcctagatcacgcaactccataggtgttttgagtgttttgtagtga-aaaatcatgtaaatcgacaaatc 26657626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 309 - 457
Target Start/End: Original strand, 50047163 - 50047312
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 407  Q
    |||||||||||||||| | ||||| | |  ||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||| ||||||||          
T  50047163 tttgcatttgaagacaaataagatgaaaagtagaggagttgtcaatgatttgagaaacatattgtattgttttcactcgagtcatggtaattcactttta 50047262  T
Q  408 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 457  Q
     |||  |||||  |||| ||||| ||||||||||||||||||| ||||||    
T  50047263 tcctaaatcatacaactccatatatgttttgagtgttttgtagcgagaaa 50047312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 338 - 457
Target Start/End: Original strand, 30675496 - 30675615
Alignment:
Q  338 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgtttt 437  Q
    ||||| ||||||||||||| |||  |||||||||||||||||||||||||||| ||||||| ||       |||  |||||| |||| |||| |||||||    
T  30675496 tagaggagttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaatacacttttgtcctatatcatgcaactccataggtgtttt 30675595  T
Q  438 gagtgttttgtagtgagaaa 457  Q
    ||||||||| ||||||||||    
T  30675596 gagtgttttatagtgagaaa 30675615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 309 - 457
Target Start/End: Complemental strand, 11770127 - 11769978
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 407  Q
    |||||||||||||| | | ||||| |||| ||||||| ||||||||||| | |  |||||||||||||||||||||||| ||| ||||||||||          
T  11770127 tttgcatttgaagataaataagatgagagttagagaatttgtcaatggtttaaggaacatattgtattgttttcactcgtgtcgttgtaattcactttta 11770028  T
Q  408 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 457  Q
     |||  |||||| ||||||||  |||| |||||||||||| |||||||||    
T  11770027 tcctaaatcatgaaacttcatgggtgtgttgagtgttttgcagtgagaaa 11769978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 309 - 454
Target Start/End: Complemental strand, 8247790 - 8247644
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 407  Q
    |||||||||||||||| | ||||| |||| ||||| || | |||||||| |||  |||||||| |||| |||||||| ||||||||||||||            
T  8247790 tttgcatttgaagacaaataagatgagagttagaggagatatcaatggtttgaggaacatattttattattttcacttgagtcattgtaattttgtttta 8247691  T
Q  408 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 454  Q
     ||| ||||||| |||| |||| ||||||||||||||||||||||||    
T  8247690 ccctagatcatgcaactccataggtgttttgagtgttttgtagtgag 8247644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 309 - 440
Target Start/End: Complemental strand, 12424047 - 12423915
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 407  Q
    |||||||||||||||| | ||||| ||||| ||||  ||||| |||||| |||  |||||||  ||||||||||||||||||||||||||||||          
T  12424047 tttgcatttgaagacaaataagatgagagacagaggcgttgttaatggtttgaggaacatatgatattgttttcactcgagtcattgtaattcagtttta 12423948  T
Q  408 ncctggatcatggaacttcatatgtgttttgag 440  Q
     | | ||||||| |||| |||||||||||||||    
T  12423947 tcttagatcatgcaactccatatgtgttttgag 12423915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 333 - 401
Target Start/End: Original strand, 12810329 - 12810397
Alignment:
Q  333 agagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    |||||||||| ||||||||||||| |||  |||||||||||||||||||| || |||| ||||||||||    
T  12810329 agagatagaggagttgtcaatggtttgaggaacatattgtattgttttcattcaagtcgttgtaattca 12810397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 400
Target Start/End: Complemental strand, 21451948 - 21451857
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattc 400  Q
    |||||||||||||||| | ||||| |||||||||  ||||||||||||||| |  ||||||||||||| ||||||||||| ||||| ||||||    
T  21451948 tttgcatttgaagacaaataagatgagagatagaagagttgtcaatggtat-aggaacatattgtattattttcactcgactcattataattc 21451857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 477
Target Start/End: Complemental strand, 25727983 - 25727874
Alignment:
Q  367 tattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaa 466  Q
    ||||||||||||||||||| | || ||||||||||       |||  |||||| ||||  ||| |||||||||||||||||||||||| ||| ||| |||    
T  25727983 tattgtattgttttcactctaatcgttgtaattcacttttatcctaaatcatgcaactcaataggtgttttgagtgttttgtagtgag-aaatcatgtaa 25727885  T
Q  467 atcgacaaatc 477  Q
    |||||||||||    
T  25727884 atcgacaaatc 25727874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 477
Target Start/End: Complemental strand, 25736391 - 25736282
Alignment:
Q  367 tattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaa 466  Q
    ||||||||||||||||||| | || ||||||||||       |||  |||||| ||||  ||| |||||||||||||||||||||||| ||| ||| |||    
T  25736391 tattgtattgttttcactctaatcgttgtaattcacttttatcctaaatcatgcaactcaataggtgttttgagtgttttgtagtgag-aaatcatgtaa 25736293  T
Q  467 atcgacaaatc 477  Q
    |||||||||||    
T  25736292 atcgacaaatc 25736282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 338 - 401
Target Start/End: Original strand, 34381720 - 34381783
Alignment:
Q  338 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    ||||| |||||| |||||| |||| |||||||| ||||||||||| ||||||| ||||||||||    
T  34381720 tagaggagttgttaatggtttgaagaacatattatattgttttcattcgagtcgttgtaattca 34381783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 477
Target Start/End: Complemental strand, 25730645 - 25730536
Alignment:
Q  367 tattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaa 466  Q
    |||||||||||||||| || | |||||| ||||||       |||  |||||| ||||||| | |||||||||||||||||||| ||| ||| ||| |||    
T  25730645 tattgtattgttttcattcaaatcattgaaattcaattttatcctaaatcatgcaacttcacaggtgttttgagtgttttgtagcgag-aaatcatgtaa 25730547  T
Q  467 atcgacaaatc 477  Q
    |||||||||||    
T  25730546 atcgacaaatc 25730536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 399
Target Start/End: Complemental strand, 25494582 - 25494521
Alignment:
Q  338 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaatt 399  Q
    ||||| ||||||||||||| |||  |||||||||| |||||||| || ||||| ||||||||    
T  25494582 tagaggagttgtcaatggtttgaggaacatattgtcttgttttctcttgagtccttgtaatt 25494521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 309 - 457
Target Start/End: Original strand, 24841735 - 24841884
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 407  Q
    |||||||||||||||| | ||| | |||||||||| |||| |||||||| |||  |||||||||||||||||||||||||||| |||||| |||          
T  24841735 tttgcatttgaagacaaataagtttagagatagaggagttttcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaagtcactttta 24841834  T
Q  408 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 457  Q
     ||| |||||||||||| |||| ||||||| |||||||||||||||||||    
T  24841835 tcctagatcatggaactccataggtgtttttagtgttttgtagtgagaaa 24841884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 451
Target Start/End: Original strand, 18222480 - 18222618
Alignment:
Q  314 atttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctg 412  Q
    ||||||||||| | ||||| |||| ||||  ||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||       |||     
T  18222480 atttgaagacaaataagatgagagttagatgagttgtcaatggtttgagaaacatattgtattgttttaactcgagtcattgtaattcacttttatccta 18222579  T
Q  413 gatcatggaacttcatatgtgttttgagtgttttgtagt 451  Q
     |||||| || | |||| |||||||||||||||| ||||    
T  18222580 aatcatgcaaatccataggtgttttgagtgttttatagt 18222618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 344 - 477
Target Start/End: Original strand, 16634064 - 16634196
Alignment:
Q  344 agttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgt 443  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||        ||  |||||| ||||  ||| ||||||||| |||    
T  16634064 agttgtcaatggtttgagaaacatattgtattgttttcactcgagtcgttgtaattcacttttattctaaatcatgcaactctataggtgttttgaatgt 16634163  T
Q  444 tttgtagtgagaaaaacatctaaatcgacaaatc 477  Q
    |||| |||||| ||| ||| ||||||||||||||    
T  16634164 tttgcagtgag-aaatcatataaatcgacaaatc 16634196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 309 - 457
Target Start/End: Complemental strand, 25594825 - 25594676
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 407  Q
    |||||||||||||||| | ||||| |||| ||||| | || |||||||| |||  |||||||||||||||||||||| ||||  ||||| ||||          
T  25594825 tttgcatttgaagacaaataagatgagagttagaggatttctcaatggtttgaggaacatattgtattgttttcactggagttgttgtatttcattttta 25594726  T
Q  408 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 457  Q
     |||  || ||| |||||||||||||||||||||||||| ||||||||||    
T  25594725 tcctaaatgatgcaacttcatatgtgttttgagtgttttatagtgagaaa 25594676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 309 - 451
Target Start/End: Complemental strand, 12340147 - 12340004
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 407  Q
    |||||||||||||||| | ||| | |||| ||||| ||||||||||||| |||  |||||||| |||| |||||||| | ||||||||||||||          
T  12340147 tttgcatttgaagacaaataaggtgagagttagaggagttgtcaatggtttgaggaacatattatattattttcacttgtgtcattgtaattcagtttta 12340048  T
Q  408 ncctggatcatggaacttcatatgtgttttgagtgttttgtagt 451  Q
      || ||||||| |||||||||||| ||||| ||||||||||||    
T  12340047 tactagatcatgcaacttcatatgtattttgcgtgttttgtagt 12340004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 344 - 454
Target Start/End: Original strand, 15205661 - 15205771
Alignment:
Q  344 agttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgt 443  Q
    |||||||| |||| |||  |||||||||||||||||||||||||||| ||||||||||       ||| ||||||| || | |||| |||||||||||||    
T  15205661 agttgtcagtggtttgaggaacatattgtattgttttcactcgagtcgttgtaattcagttttctcctagatcatgcaattccataggtgttttgagtgt 15205760  T
Q  444 tttgtagtgag 454  Q
    |||| ||||||    
T  15205761 tttgcagtgag 15205771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 309 - 401
Target Start/End: Original strand, 24517336 - 24517429
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    |||||||||||||||| | ||||| |||  ||||| ||||||||||||| |||  ||||||||||||||||||||| |||||| ||||||||||    
T  24517336 tttgcatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaacatattgtattgttttcacccgagtcgttgtaattca 24517429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 307 - 385
Target Start/End: Complemental strand, 17382170 - 17382091
Alignment:
Q  307 tttttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactc 385  Q
    |||||||||||||||||| | ||||| |||| ||||| ||||||||||||| |||  |||||||||||||||||||||||    
T  17382170 tttttgcatttgaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtattgttttcactc 17382091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 333 - 453
Target Start/End: Complemental strand, 26330176 - 26330055
Alignment:
Q  333 agagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtca-ttgtaattcannnnnnncctggatcatggaacttcatatg 431  Q
    |||||| ||| ||||||||||||| | |  || ||||||||||||||||||| ||| || |||||||||        ||| ||||||| ||||||||| |    
T  26330176 agagatggagtagttgtcaatggtctaaggaatatattgtattgttttcacttgagccagttgtaattcccttttatcctagatcatgcaacttcatagg 26330077  T
Q  432 tgttttgagtgttttgtagtga 453  Q
    ||||||||||||||||||||||    
T  26330076 tgttttgagtgttttgtagtga 26330055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 327 - 384
Target Start/End: Complemental strand, 11274445 - 11274387
Alignment:
Q  327 aagataagagatagagaagttgtcaatggtatga-aaaacatattgtattgttttcact 384  Q
    |||||||||||||||  ||||||||||||| ||| ||||||||||||||||||||||||    
T  11274445 aagataagagatagatcagttgtcaatggtttgagaaaacatattgtattgttttcact 11274387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 25680619 - 25680671
Alignment:
Q  349 tcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    |||||||| |||  |||||||||||||||||||||||||||| ||||||||||    
T  25680619 tcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaattca 25680671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 344 - 401
Target Start/End: Complemental strand, 7742966 - 7742909
Alignment:
Q  344 agttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    ||||||||||||| |||| ||||| |||||||||||||  ||||||| ||||||||||    
T  7742966 agttgtcaatggtttgaagaacattttgtattgttttcgttcgagtctttgtaattca 7742909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 24268574 - 24268630
Alignment:
Q  345 gttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    |||||| ||||| |||  ||||| ||||||||||||||||||||||||| |||||||    
T  24268574 gttgtcgatggtttgaggaacatcttgtattgttttcactcgagtcattataattca 24268630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 24345203 - 24345259
Alignment:
Q  345 gttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    |||||| ||||| |||  ||||| ||||||||||||||||||||||||| |||||||    
T  24345203 gttgtcgatggtttgaggaacatcttgtattgttttcactcgagtcattataattca 24345259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 401
Target Start/End: Original strand, 20694660 - 20694715
Alignment:
Q  346 ttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    ||||||||||| |||  ||| | |||||||||||||| ||||||||||||||||||    
T  20694660 ttgtcaatggtttgaggaactttttgtattgttttcattcgagtcattgtaattca 20694715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 458
Target Start/End: Complemental strand, 11997921 - 11997877
Alignment:
Q  414 atcatggaacttcatatgtgttttgagtgttttgtagtgagaaaa 458  Q
    |||||| ||||||||| ||||||||||| |||| |||||||||||    
T  11997921 atcatgcaacttcataggtgttttgagttttttttagtgagaaaa 11997877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 457
Target Start/End: Original strand, 22754989 - 22755025
Alignment:
Q  421 aacttcatatgtgttttgagtgttttgtagtgagaaa 457  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  22754989 aacttcataggtgttttgagtgttttgaagtgagaaa 22755025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 333 - 457
Target Start/End: Original strand, 13911272 - 13911396
Alignment:
Q  333 agagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgt 432  Q
    |||||||||  ||||||||||||| |||  ||||||| |||||||||||||| || |||||||||||||       ||| ||||||| ||||||||||||    
T  13911272 agagatagaagagttgtcaatggtttgaggaacatatggtattgttttcacttgaatcattgtaattcacttttatcctagatcatgcaacttcatatgt 13911371  T
Q  433 gttttgagtgttttgtagtgagaaa 457  Q
    ||||| |||||||||||||||||||    
T  13911372 gtttttagtgttttgtagtgagaaa 13911396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 363 - 453
Target Start/End: Complemental strand, 2729696 - 2729606
Alignment:
Q  363 aacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtga 453  Q
    |||||||| ||||||||||||||||||| ||||||||||       |||  | |||| |||||||||||||||||||||||||||||||||    
T  2729696 aacatattatattgttttcactcgagtccttgtaattcatttttatcctaaaccatgcaacttcatatgtgttttgagtgttttgtagtga 2729606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 344 - 390
Target Start/End: Original strand, 18065834 - 18065880
Alignment:
Q  344 agttgtcaatggtatgaaaaacatattgtattgttttcactcgagtc 390  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  18065834 agttgtcaatggtttgagaaacatattgtattgttttcactcgagtc 18065880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 401
Target Start/End: Original strand, 12409476 - 12409533
Alignment:
Q  344 agttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    ||||||||||||| |||| ||||||||||||| |||||||| ||||| ||||||||||    
T  12409476 agttgtcaatggtttgaagaacatattgtattattttcacttgagtcgttgtaattca 12409533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 401
Target Start/End: Complemental strand, 33914695 - 33914602
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    ||||||||| |||||| | ||||| |||| || || ||||||||| ||| |||  |||||||||||||||||| ||||||||| ||||||||||    
T  33914695 tttgcatttcaagacaaataagatgagagttataggagttgtcaacggtttgaggaacatattgtattgtttttactcgagtcgttgtaattca 33914602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 457
Target Start/End: Original strand, 27415208 - 27415299
Alignment:
Q  363 aacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 457  Q
    ||||||||||||||||||||||||||||   ||||||||       | |  |||||| ||||||||| ||||||||||||||||||||| |||||    
T  27415208 aacatattgtattgttttcactcgagtc---gtaattcacttttatcgtaaatcatgcaacttcataggtgttttgagtgttttgtagtaagaaa 27415299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 401
Target Start/End: Complemental strand, 1475394 - 1475320
Alignment:
Q  327 aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    ||||| |||| ||||| |||| |||||||| |||  || |||||||||| |||||||||||||| ||||||||||    
T  1475394 aagatgagagttagaggagttttcaatggtttgaggaatatattgtattattttcactcgagtcgttgtaattca 1475320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 454
Target Start/End: Original strand, 25883140 - 25883231
Alignment:
Q  363 aacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 454  Q
    |||||||| |||||||||||||||| || ||||||||||       ||| ||| ||| |||| |||| |||||||||||||||| |||||||    
T  25883140 aacatattatattgttttcactcgaatcgttgtaattcagttttatcctagattatgcaactacataggtgttttgagtgttttatagtgag 25883231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 457
Target Start/End: Original strand, 11474868 - 11474977
Alignment:
Q  348 gtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttg 447  Q
    ||||||||| |||  ||| | ||||||| |||||| |||| || ||||||||||       |||  |||||| ||||||||||||||||||||| ||||     
T  11474868 gtcaatggtttgaggaactttttgtattattttcattcgactcgttgtaattcaattttatcctaaatcatgcaacttcatatgtgttttgagtcttttt 11474967  T
Q  448 tagtgagaaa 457  Q
    ||||||||||    
T  11474968 tagtgagaaa 11474977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 457
Target Start/End: Original strand, 21017859 - 21018008
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 407  Q
    |||||||||||||| | | ||||| |||| ||||| ||||| ||||  | |||  |||||||| |||| ||||||  |||||| ||||||||||          
T  21017859 tttgcatttgaagaaaaataagatgagagttagaggagttggcaataatttgaggaacatattatattattttcaaccgagtcgttgtaattcagtttta 21017958  T
Q  408 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 457  Q
     ||| ||||||| ||||  | ||||||||||||||||||||| |||||||    
T  21017959 tcctagatcatgcaactctaaatgtgttttgagtgttttgtattgagaaa 21018008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 401
Target Start/End: Complemental strand, 8402653 - 8402590
Alignment:
Q  338 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    ||||| ||||||||||||| |||  ||||  |||||||||||||| ||||||| ||||||||||    
T  8402653 tagaggagttgtcaatggtttgaggaacaatttgtattgttttcattcgagtcgttgtaattca 8402590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 401
Target Start/End: Complemental strand, 4780764 - 4780727
Alignment:
Q  364 acatattgtattgttttcactcgagtcattgtaattca 401  Q
    ||||||||||||||||||||| || |||||||||||||    
T  4780764 acatattgtattgttttcacttgaatcattgtaattca 4780727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 452
Target Start/End: Complemental strand, 4775785 - 4775696
Alignment:
Q  363 aacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtg 452  Q
    |||||||| ||||||||||||  ||||| ||||||||||       ||| ||||||| |||||||||| | |||| |||| |||||||||    
T  4775785 aacatattttattgttttcacctgagtcgttgtaattcactcttatcctagatcatgcaacttcatatatattttaagtggtttgtagtg 4775696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 309 - 454
Target Start/End: Complemental strand, 13082070 - 13081924
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 407  Q
    |||||||||||||||| | ||||| |||| ||||| ||||||||||| | ||| |||||  ||||| |||||||||||||||  ||||||||||          
T  13082070 tttgcatttgaagacaaataagatgagagttagaggagttgtcaatgatttgagaaacacgttgtagtgttttcactcgagtagttgtaattcagttgta 13081971  T
Q  408 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 454  Q
     ||| ||||||| ||||||||| |||||||||| |||||||||||||    
T  13081970 tcctagatcatgcaacttcataggtgttttgagagttttgtagtgag 13081924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 309 - 454
Target Start/End: Complemental strand, 29047449 - 29047306
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 407  Q
    |||||||||||| ||| | ||||| |||| ||||| |||||||||||||| |||   || |||||||||||||||||||||||| |||||||||          
T  29047449 tttgcatttgaaaacaaataagatgagagttagaggagttgtcaatggtaggaa---cacattgtattgttttcactcgagtcactgtaattcaatttta 29047353  T
Q  408 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 454  Q
       ||||||||| |||| ||||| |||||||||||||||||||||||    
T  29047352 taatggatcatgcaactccatatatgttttgagtgttttgtagtgag 29047306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 309 - 477
Target Start/End: Complemental strand, 16052410 - 16052242
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 407  Q
    ||||||||||| |||| | || || |||| ||||| ||||||||||||| |||| |||||||| || |||||||||||||||| || |||||||          
T  16052410 tttgcatttgaggacaaataaaatgagagttagaggagttgtcaatggtttgaataacatattttaatgttttcactcgagtcgttataattcacattta 16052311  T
Q  408 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatc 477  Q
     | |  |||||| ||||  ||| |||||||||||||||||||||||| ||| |||||||||| |||||||    
T  16052310 ccttaaatcatgcaactcaataggtgttttgagtgttttgtagtgag-aaatcatctaaatcaacaaatc 16052242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 309 - 400
Target Start/End: Complemental strand, 28901473 - 28901381
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattc 400  Q
    |||||||||||| ||| | ||| | |||||||||| ||||||||||||| |||  |||||||||||||||||||||||||||| |||||||||    
T  28901473 tttgcatttgaatacaaataagttgagagatagaggagttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaattc 28901381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 309 - 401
Target Start/End: Complemental strand, 14977240 - 14977146
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattg-ttttcactcgagtcattgtaattca 401  Q
    ||||||||| |||||| | ||||| |||| ||||| ||||||||||||| |||  |||||||||||||| |||||||||||||||||||||||||    
T  14977240 tttgcattttaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtattgtttttcactcgagtcattgtaattca 14977146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 309 - 401
Target Start/End: Original strand, 12956471 - 12956564
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    |||||||||||||| | | ||||| |||| ||||| ||||||||||||| |||  || ||||||||||||||||||||||||||| ||||||||    
T  12956471 tttgcatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaaaatattgtattgttttcactcgagtcatcgtaattca 12956564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 309 - 454
Target Start/End: Original strand, 16054276 - 16054422
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 407  Q
    |||||||||||||||| | |||||||||| ||||| ||||||||||| | | |  ||||| |||||||||||||||||||||  ||||||||||          
T  16054276 tttgcatttgaagacaaataagataagagttagaggagttgtcaatgatttaaggaacattttgtattgttttcactcgagttgttgtaattcattttta 16054375  T
Q  408 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 454  Q
     ||| ||||||  |||| ||||  |||||||| ||||||||||||||    
T  16054376 tcctagatcataaaactccatagatgttttgattgttttgtagtgag 16054422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 313 - 457
Target Start/End: Original strand, 32239273 - 32239418
Alignment:
Q  313 catttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncct 411  Q
    |||||||||| ||| ||||||| |  ||||| ||||||||||||| |||  |||||||||||||||||| ||| ||||| ||| ||||||       | |    
T  32239273 catttgaagatagataagataataattagaggagttgtcaatggtttgagtaacatattgtattgtttttacttgagtcgttgcaattcacttttatctt 32239372  T
Q  412 ggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 457  Q
      |||||| |||| ||||  ||||||||||||||||||||||||||    
T  32239373 aaatcatgcaactccataaatgttttgagtgttttgtagtgagaaa 32239418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 335 - 401
Target Start/End: Original strand, 28902098 - 28902164
Alignment:
Q  335 agatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    |||||||| |||| | |||||| ||| ||||||||||||||||||||| ||||||| ||||||||||    
T  28902098 agatagaggagttattaatggtttgagaaacatattgtattgttttcattcgagtcgttgtaattca 28902164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 453
Target Start/End: Complemental strand, 5570219 - 5570129
Alignment:
Q  363 aacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtga 453  Q
    |||||||||||||||||||||||||||  ||||||||||       |||  |||||| |||||| || |||||||||||||||| ||||||    
T  5570219 aacatattgtattgttttcactcgagttgttgtaattcacttttatcctatatcatgcaacttcgtaggtgttttgagtgttttctagtga 5570129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 388
Target Start/End: Original strand, 6358680 - 6358760
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgag 388  Q
    |||||||||||||||| | ||| | |||||||||| |||||| |||||| ||  ||||||||||||||||||||| |||||    
T  6358680 tttgcatttgaagacatataagttgagagatagaggagttgttaatggtttgggaaacatattgtattgttttcaatcgag 6358760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 401
Target Start/End: Complemental strand, 35135499 - 35135462
Alignment:
Q  364 acatattgtattgttttcactcgagtcattgtaattca 401  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  35135499 acattttgtattgtttttactcgagtcattgtaattca 35135462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 401
Target Start/End: Complemental strand, 24584796 - 24584764
Alignment:
Q  369 ttgtattgttttcactcgagtcattgtaattca 401  Q
    |||||||||||||| ||||||||||||||||||    
T  24584796 ttgtattgttttcattcgagtcattgtaattca 24584764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 309 - 454
Target Start/End: Complemental strand, 22067939 - 22067791
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 407  Q
    |||||||||||||||| | ||||| |||| || || ||||||||||||| |||  |||||| ||||||||||||||||||||||||||||||||          
T  22067939 tttgcatttgaagacaaataagatgagagttaaaggagttgtcaatggtttgaggaacataatgtattgttttcactcgagtcattgtaattcaatttta 22067840  T
Q  408 ncctggatcatggaacttcata--tgtgttttgagtgttttgtagtgag 454  Q
     ||| ||||||| |||| ||||  | | |||||||||||||||||||||    
T  22067839 tcctagatcatgcaactccataggtattttttgagtgttttgtagtgag 22067791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 333 - 449
Target Start/End: Complemental strand, 1255321 - 1255205
Alignment:
Q  333 agagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgt 432  Q
    |||| ||||| ||||||||||||| |||  || | ||||||||||||||||||||||||||||||||||       |||  |||||| ||||||||| ||    
T  1255321 agagttagaggagttgtcaatggtttgaggaataaattgtattgttttcactcgagtcattgtaattcatttttatcctaaatcatgcaacttcataggt 1255222  T
Q  433 gttttgagtgttttgta 449  Q
    |||||||||||||||||    
T  1255221 gttttgagtgttttgta 1255205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 401
Target Start/End: Original strand, 29544501 - 29544594
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    |||||||||||||||| | ||||| |||| ||||| |||||||||| || |||  |||||||||||||||||||||||||||| ||||||||||    
T  29544501 tttgcatttgaagacaaataagatgagagttagaggagttgtcaatagtttgaggaacatattgtattgttttcactcgagtcgttgtaattca 29544594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 477
Target Start/End: Original strand, 7142116 - 7142248
Alignment:
Q  344 agttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgt 443  Q
    ||||||||||||| | |  |||||||| ||||| ||||||||||||| ||||||||||       ||  ||||||| |||| |||| ||||||| |||||    
T  7142116 agttgtcaatggtttaaggaacatattttattgctttcactcgagtcgttgtaattcacttttatccaagatcatgcaactccataggtgttttaagtgt 7142215  T
Q  444 tttgtagtgagaaaaacatctaaatcgacaaatc 477  Q
    ||||||||||| ||| ||| ||||||||||||||    
T  7142216 tttgtagtgag-aaatcatgtaaatcgacaaatc 7142248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 453
Target Start/End: Original strand, 7815306 - 7815450
Alignment:
Q  310 ttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnn 408  Q
    ||||||||||||| | | ||||| |||| || || | ||||||||||| | | |||||||||||||| |||||||||| ||  ||||||||||           
T  7815306 ttgcatttgaagataaataagatgagagttaaaggacttgtcaatggtttaagaaacatattgtatttttttcactcgggtggttgtaattcagttttat 7815405  T
Q  409 cctggatcatggaacttcatatgtgttttgagtgttttgtagtga 453  Q
     ||  |||||| ||||||||| |||||||||||||||||||||||    
T  7815406 tctaaatcatgcaacttcataggtgttttgagtgttttgtagtga 7815450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 21545897 - 21545843
Alignment:
Q  343 aagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaa 397  Q
    |||||||||||||| |||  |||||||||||||||||||||||||||| ||||||    
T  21545897 aagttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaa 21545843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 401
Target Start/End: Original strand, 23124886 - 23124975
Alignment:
Q  313 catttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    |||||||||||| | ||||| |||  ||||| |||||| | |||| |||  |||||||||||||||||||||||||||| ||||||||||    
T  23124886 catttgaagacaaataagatgagatttagaggagttgttagtggtctgaggaacatattgtattgttttcactcgagtcgttgtaattca 23124975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 9066141 - 9066196
Alignment:
Q  335 agatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtc 390  Q
    |||||||||||||||||||| | | |  ||||||||||||||||||||||||||||    
T  9066141 agatagagaagttgtcaatgtttttaggaacatattgtattgttttcactcgagtc 9066196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 401
Target Start/End: Original strand, 315186 - 315260
Alignment:
Q  327 aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    ||||| |||| ||||| ||||||||||||| |||| || |||||||||| || |||||||||| ||||| |||||    
T  315186 aagatgagagttagaggagttgtcaatggtttgaagaatatattgtattattgtcactcgagttattgttattca 315260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 477
Target Start/End: Complemental strand, 20470913 - 20470775
Alignment:
Q  338 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgtttt 437  Q
    ||||| ||||||||||||| |||  |||||||| |||||||||||||  |||| ||||||||||       |||  |||||| | || ||||  ||||||    
T  20470913 tagaggagttgtcaatggtttgaggaacatattatattgttttcacttaagtcgttgtaattcactttcagcctaaatcatgcatctgcatagctgtttt 20470814  T
Q  438 gagtgttttgtagtgagaaaaacatctaaatcgacaaatc 477  Q
    ||||||||| ||||||  ||| ||| ||||||||||||||    
T  20470813 gagtgttttatagtga-taaagcatgtaaatcgacaaatc 20470775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 392
Target Start/End: Original strand, 20446221 - 20446305
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcat 392  Q
    ||||||||||||||||   ||||| |||  ||||| ||||||||||||| | | ||||||||||| ||||||||||| |||||||    
T  20446221 tttgcatttgaagacaattaagatgagaattagaggagttgtcaatggtttcagaaacatattgttttgttttcacttgagtcat 20446305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 401
Target Start/End: Original strand, 27302761 - 27302853
Alignment:
Q  310 ttgcatttgaagacagaaa-gataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    ||||||||||||||| | | ||| | |||||||||||||||||||||| |||  ||||| |||||||||||||||||||||||||||||||||    
T  27302761 ttgcatttgaagacaaatatgatgatagatagagaagttgtcaatggtttgaggaacattttgtattgttttcactcgagtcattgtaattca 27302853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 477
Target Start/End: Complemental strand, 25315345 - 25315196
Alignment:
Q  327 aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttc 426  Q
    ||||| |||||||||| ||||||||||| | |||  |||||||||||||||||||||| ||||| |||||||| |       ||| ||||||| |||| |    
T  25315345 aagatgagagatagaggagttgtcaatgctttgaggaacatattgtattgttttcacttgagtcgttgtaattaagttttatcctagatcatgcaactcc 25315246  T
Q  427 atatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatc 477  Q
    ||||| |||||||||  |||||||||||  || ||| ||||||||||||||    
T  25315245 atatgggttttgagtaatttgtagtgag-gaatcatgtaaatcgacaaatc 25315196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 401
Target Start/End: Complemental strand, 47024864 - 47024796
Alignment:
Q  333 agagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    |||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| | || |||||||    
T  47024864 agagatagagtagttgtcaatggtttgaaaaatatattgtattgttttcactcgagccgttctaattca 47024796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 338 - 401
Target Start/End: Original strand, 10576465 - 10576528
Alignment:
Q  338 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    ||||||||||||| ||||| |||| ||||| |||||||||||||| ||||||||||||||||||    
T  10576465 tagagaagttgtccatggtttgaagaacattttgtattgttttcattcgagtcattgtaattca 10576528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 393
Target Start/End: Complemental strand, 5906853 - 5906768
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcatt 393  Q
    |||||||||||||||| | ||||| |||| ||||| | ||||||||||| |||  |||||||| ||||||||||||||||||||||    
T  5906853 tttgcatttgaagacaaacaagatgagagttagaggaattgtcaatggtttgaggaacatattatattgttttcactcgagtcatt 5906768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 401
Target Start/End: Complemental strand, 12111463 - 12111371
Alignment:
Q  309 tttgcatttgaagacagaaagataagagatagagaagttgtcaatggtatgaaaaacatattgta-ttgttttcactcgagtcattgtaattca 401  Q
    |||||||||||||||| |||||| ||| |||||| ||||||||||||| |||  ||||||||||| || ||||||| |||||| ||||||||||    
T  12111463 tttgcatttgaagacaaaaagatgaga-atagaggagttgtcaatggtttgaggaacatattgtattttttttcacacgagtcgttgtaattca 12111371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 475
Target Start/End: Original strand, 15192240 - 15192351
Alignment:
Q  363 aacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacat 462  Q
    ||||||||||||||||||||||| |||  ||||||||||       ||| |||| || | || |||| |||||||||||||||||||||||| ||| |||    
T  15192240 aacatattgtattgttttcactcaagttgttgtaattcacttttatcctagatcgtgcagctccataggtgttttgagtgttttgtagtgag-aaatcat 15192338  T
Q  463 ctaaatcgacaaa 475  Q
     ||||||||||||    
T  15192339 gtaaatcgacaaa 15192351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 309 - 477
Target Start/End: Complemental strand, 34864424 - 34864260
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 407  Q
    |||| ||||||||||| | ||||||| || ||||| ||||||||||||| |||  ||| |||  |||||||||||||||  |||||||||||||          
T  34864424 tttgtatttgaagacaaataagataaaagttagaggagttgtcaatggtttgaggaacgtatcatattgttttcactcg--tcattgtaattcactttta 34864327  T
Q  408 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatc 477  Q
     |||  || ||| |||| |||  |||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  34864326 tcctaaattatgaaactccat--gtgttttgagtgttttgtagtgag-aaatcatgtaaatcgacaaatc 34864260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 401
Target Start/End: Complemental strand, 1676424 - 1676335
Alignment:
Q  313 catttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    |||||||||||| | ||||| | |||||||| ||||||||||||| |||  ||||||||||| |||||||| ||||||  ||||||||||    
T  1676424 catttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaacatattgtaatgttttcattcgagtttttgtaattca 1676335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 401
Target Start/End: Complemental strand, 1682952 - 1682863
Alignment:
Q  313 catttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    |||||||||||| | ||||| | |||||||| ||||||||||||| |||  ||||||||||| |||||||| ||||||  ||||||||||    
T  1682952 catttgaagacaaataagatgaaagatagaggagttgtcaatggtttgaggaacatattgtaatgttttcattcgagtttttgtaattca 1682863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 401
Target Start/End: Complemental strand, 9783096 - 9783023
Alignment:
Q  328 agataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    |||| |||| ||||| |||||||||| || |||  ||||||||||||||||||||||| | |||||||||||||    
T  9783096 agatgagagttagaggagttgtcaatagtttgaggaacatattgtattgttttcactcaattcattgtaattca 9783023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 400
Target Start/End: Original strand, 18897973 - 18898065
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattc 400  Q
    |||||||||||||||| | ||| | |||||||||  | ||||||||||| | |  |||||||||||||||||||||||||| | |||||||||    
T  18897973 tttgcatttgaagacaaataagttgagagatagatgatttgtcaatggtttaaggaacatattgtattgttttcactcgagccgttgtaattc 18898065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 457
Target Start/End: Complemental strand, 10320298 - 10320203
Alignment:
Q  362 aaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 457  Q
    |||||||||||||| |||||||||||||| ||||||||||       ||| || |||| |||| |||| ||||||| ||  |||||||||||||||    
T  10320298 aaacatattgtattcttttcactcgagtcgttgtaattcacttttatcctagaccatgcaactccataggtgttttaagctttttgtagtgagaaa 10320203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 454
Target Start/End: Complemental strand, 21505272 - 21505126
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 407  Q
    |||||||||||||||| | ||||| |||| ||||| ||||||||||||| |||  | |||||||||||||||||||||||||| || ||||| |          
T  21505272 tttgcatttgaagacaaataagatgagagttagagtagttgtcaatggtttgaggagcatattgtattgttttcactcgagtctttataatttactttta 21505173  T
Q  408 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 454  Q
     |||  |||||| |||||| ||  |||||||||||||||||||||||    
T  21505172 tcctaaatcatgcaacttcttagatgttttgagtgttttgtagtgag 21505126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 309 - 453
Target Start/End: Original strand, 30998753 - 30998898
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 407  Q
    ||||| |||||||||| | ||||| |||| ||||  ||||||||||||| |||  |||||||||||||||||||||| ||||| ||||| ||||          
T  30998753 tttgcctttgaagacaaataagatgagagttagatgagttgtcaatggtttgaggaacatattgtattgttttcacttgagtcgttgtacttcagtttta 30998852  T
Q  408 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtga 453  Q
     ||| ||||||  |||| |||| |||||||||||||||||||||||    
T  30998853 tcctagatcatacaactccataggtgttttgagtgttttgtagtga 30998898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 451
Target Start/End: Original strand, 35031703 - 35031827
Alignment:
Q  327 aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttc 426  Q
    ||||| |||||||||| |||||| |||||| |||  |||||||||||||||||||||||||||| |||||| | |       ||| ||||||| || | |    
T  35031703 aagatgagagatagaggagttgttaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaacttacttttatcctagatcatgcaattcc 35031802  T
Q  427 atatgtgttttgagtgttttgtagt 451  Q
    ||| |||||||||||||||||||||    
T  35031803 ataggtgttttgagtgttttgtagt 35031827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 307 - 453
Target Start/End: Complemental strand, 16593887 - 16593738
Alignment:
Q  307 tttttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatga--aaaacatattgtattgttttcactcgagtcattgtaattcann 403  Q
    |||||||||||||||||| | ||||| |||| || || ||||||||||||| |||  || ||||||| ||||||||||||||||||  || |||||||      
T  16593887 tttttgcatttgaagacaaataagattagagttataggagttgtcaatggtttgatgaacacatattatattgttttcactcgagttgttttaattcagt 16593788  T
Q  404 nnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtga 453  Q
         ||| ||||||| |||| |||| ||||| |||||||||||||||||    
T  16593787 tttatcctagatcatgcaactccataggtgttctgagtgttttgtagtga 16593738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 454
Target Start/End: Original strand, 35707785 - 35707931
Alignment:
Q  309 tttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnn 407  Q
    |||| ||||||||||| | ||||| |||| ||||||||||||||||||| ||| |||||| |||||||||||||||| || |  ||||||||||          
T  35707785 tttgtatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaacatgttgtattgttttcacttgatttgttgtaattcagtttta 35707884  T
Q  408 ncctggatcatggaacttcatatgtgttttgagtgttttgtagtgag 454  Q
     ||| |||      |||||||| ||||||||||||||||||||||||    
T  35707885 tcctagattgcacgacttcataggtgttttgagtgttttgtagtgag 35707931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 338 - 401
Target Start/End: Original strand, 24047394 - 24047457
Alignment:
Q  338 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    ||||||| ||||||||||| | |  ||||| |||||||||||||| ||||||||||||||||||    
T  24047394 tagagaaattgtcaatggtttaaggaacattttgtattgttttcattcgagtcattgtaattca 24047457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 454
Target Start/End: Original strand, 25474023 - 25474165
Alignment:
Q  313 catttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncct 411  Q
    |||||||||||| | ||||| |||| ||||| |||||||||| || |||  ||||||||| |||| |||||||| || |  |||||||||       |||    
T  25474023 catttgaagacaaataagatgagagttagaggagttgtcaattgtttgaggaacatattgaattggtttcactcaagacgctgtaattcagtattatcct 25474122  T
Q  412 ggatcatggaacttcatatgtgttttgagtgttttgtagtgag 454  Q
     ||||||| |||| || | ||||||||| ||||||||||||||    
T  25474123 agatcatgcaactccaaaggtgttttgactgttttgtagtgag 25474165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 401
Target Start/End: Original strand, 1733080 - 1733175
Alignment:
Q  307 tttttgcatttgaagacagaa-agataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    ||||| |||||||||||| |  |||| |||| ||||| |||||||||||   ||| ||||| ||||||||||||||| | ||||| ||||||||||    
T  1733080 ttttttcatttgaagacaaatgagatgagagttagaggagttgtcaatgagttgagaaacaaattgtattgttttcatttgagtcgttgtaattca 1733175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 477
Target Start/End: Complemental strand, 27417290 - 27417228
Alignment:
Q  414 atcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatc 477  Q
    |||||| |||| |||| ||||||| |||||||||||||||| ||| ||| ||||||||||||||    
T  27417290 atcatgcaactccataggtgttttaagtgttttgtagtgag-aaatcatgtaaatcgacaaatc 27417228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 399
Target Start/End: Complemental strand, 21843105 - 21843044
Alignment:
Q  338 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaatt 399  Q
    ||||| ||||| ||||||| | |  ||||| |||||||||||||| ||||||||||||||||    
T  21843105 tagaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatt 21843044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 399
Target Start/End: Complemental strand, 21844732 - 21844671
Alignment:
Q  338 tagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaatt 399  Q
    ||||| ||||||||||||| | |  ||||| || ||||||||||| ||||||||||||||||    
T  21844732 tagaggagttgtcaatggttttaggaacatgttatattgttttcattcgagtcattgtaatt 21844671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 32276607 - 32276555
Alignment:
Q  347 tgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaatt 399  Q
    |||||||||| |||| ||||| ||| |||||||| | ||||||||||||||||    
T  32276607 tgtcaatggtttgaagaacattttgcattgtttttattcgagtcattgtaatt 32276555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 332 - 457
Target Start/End: Complemental strand, 17860557 - 17860432
Alignment:
Q  332 aagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatg 431  Q
    ||||| ||||||| ||||||||||| |||  ||||| ||||||| ||||||||||||||||||| ||| |       | |  |||||| |||| |||| |    
T  17860557 aagagttagagaatttgtcaatggtttgaggaacattttgtattattttcactcgagtcattgtcatttacttttatcttaaatcatgcaactccatacg 17860458  T
Q  432 tgttttgagtgttttgtagtgagaaa 457  Q
    || |||||||||||||||||||||||    
T  17860457 tgctttgagtgttttgtagtgagaaa 17860432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 327 - 401
Target Start/End: Complemental strand, 13759565 - 13759491
Alignment:
Q  327 aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    ||||| |||| ||||| ||||||||||||| |||  ||||||||| ||||||||||||||| || ||||||||||    
T  13759565 aagatgagagttagaggagttgtcaatggtttgaggaacatattgaattgttttcactcgaatcgttgtaattca 13759491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 327 - 401
Target Start/End: Original strand, 30355327 - 30355400
Alignment:
Q  327 aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattca 401  Q
    ||||| |||| ||||||||||||||||||| ||| |||||||||||||| ||||||||| |||| || |||||||    
T  30355327 aagatgagagttagagaagttgtcaatggtttgataaacatattgtatt-ttttcactcaagtcgttttaattca 30355400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 438
Target Start/End: Original strand, 16527878 - 16528002
Alignment:
Q  315 tttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtattgttttcactcgagtcattgtaattcannnnnnncctgg 413  Q
    |||||||||| | ||||| |||| ||||| |||||||  |||| |||  | |||||| ||||||||||||||||||| ||||||||||       ||| |    
T  16527878 tttgaagacaaataagatgagagttagaggagttgtcggtggtttgagtaccatattatattgttttcactcgagtcgttgtaattcatttttatcctag 16527977  T
Q  414 atcatggaacttcatatgtgttttg 438  Q
    |||||| ||||||||| ||||||||    
T  16527978 atcatgcaacttcataggtgttttg 16528002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 454
Target Start/End: Original strand, 15998599 - 15998639
Alignment:
Q  414 atcatggaacttcatatgtgttttgagtgttttgtagtgag 454  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  15998599 atcatgcaacttcataggtgttttgagtgttttgtagtgag 15998639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 22609481 - 22609538
Alignment:
Q  138 tgttggttttgaatttccgaactattatatccggattttcaaagcctattttaaaaaa 195  Q
    ||||||||||| |||||||||||||| |||  |||||| ||||  |||||||||||||    
T  22609481 tgttggttttggatttccgaactattgtatttggatttccaaattctattttaaaaaa 22609538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 475
Target Start/End: Original strand, 21438 - 21545
Alignment:
Q  367 tattgtattgttttcactcgagtcattgtaattcannnnnnncctggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaa 466  Q
    |||||||||||||||||||||||| ||||||||||       |||  |||||| |||||||||  ||||||| |||||||| ||||||  || ||| |||    
T  21438 tattgtattgttttcactcgagtcgttgtaattcacttttatcctaaatcatgcaacttcataattgttttgggtgttttgcagtgag-gaatcatgtaa 21536  T
Q  467 atcgacaaa 475  Q
    |||||||||    
T  21537 atcgacaaa 21545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 477
Target Start/End: Original strand, 12332 - 12394
Alignment:
Q  414 atcatggaacttcatatgtgttttgagtgttttgtagtgagaaaaacatctaaatcgacaaatc 477  Q
    |||||| |||| |||| |||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  12332 atcatgcaactccataggtgttttgagtgttttgtagtgag-aaatcatgtaaatcgacaaatc 12394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 393
Target Start/End: Complemental strand, 22623 - 22593
Alignment:
Q  363 aacatattgtattgttttcactcgagtcatt 393  Q
    |||||||||||||||||||||||||||||||    
T  22623 aacatattgtattgttttcactcgagtcatt 22593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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