View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0493_low_96 (Length: 251)
Name: NF0493_low_96
Description: NF0493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0493_low_96 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 31476311 - 31476068
Alignment:
| Q |
5 |
gaaaggtaaaaaacacaaattagttatcaaagtgttaggcatgtgctagtggcatggggctacctttgaattcggttaaattgtcacacctctacccaac |
104 |
Q |
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| T |
31476311 |
gaaaggtaaaaaacacaaattagttatcaaagtgttaggcatgtgctagtggcatggggctacctttgaattcggttaaattgtcacacctctacccaac |
31476212 |
T |
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| Q |
105 |
attgtgcattattaaatgtgaaatgaaaaaaggcacaagatttataaaatgagttcgaagcttttgg--------tggcttgttcttcgtgtattggtaa |
196 |
Q |
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| T |
31476211 |
attgtgcattattaaatgtgaaatgaaaaaaggcacaagatttataaaatgagttcgaggcttttggtgtatacatggattgttcttcttgtattggtaa |
31476112 |
T |
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| Q |
197 |
acataattttcattagtcatcacctagtattgcttcgtcttcat |
240 |
Q |
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| T |
31476111 |
acataattttcattagtcatcacctagtattgcttcctcttcat |
31476068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 33 - 224
Target Start/End: Complemental strand, 31501664 - 31501466
Alignment:
| Q |
33 |
aaagtgttaggcatgtgctagtggcatggggctacctttgaattcggttaaattgtcacacctctacccaacattgtgcattattaaatgtgaaatgaaa |
132 |
Q |
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| T |
31501664 |
aaagtgttaggcatgcgctagtggcatggggctacatttgaaatcgggtaaattgtcacaccactgcccaatattatgtattattaaatgtgaaacgaaa |
31501565 |
T |
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| Q |
133 |
aaaggcacaagatttataaaatgagttcgaagcttttgg--------tggcttgttcttcgtgtattggtaaacataattttcattagtcatcacctagt |
224 |
Q |
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| T |
31501564 |
aaggacacaagaattataaaatgagtttgaggctattggtgtatacatggcttgttctcggtgt-gtggtaaacaaaattttcattagtcatcacctagt |
31501466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 47919439 - 47919389
Alignment:
| Q |
73 |
aattcggttaaattgtcacacctctacccaacattgtgcattattaaatgt |
123 |
Q |
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||||| |||||||||| ||| |||||||| |||||||| |||||||||||| |
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| T |
47919439 |
aattctgttaaattgttacatctctacccgacattgtgtattattaaatgt |
47919389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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