View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0494_high_2 (Length: 309)
Name: NF0494_high_2
Description: NF0494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0494_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 37221783 - 37221539
Alignment:
| Q |
1 |
gaaaaattcagaacaagcacaaaatttccactaccagaaaaccaaagcatgacagaaaaataaaatccaacctttccctggaataaaaacaagaccactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37221783 |
gaaaaattcagaacaagcacaaaatttccactaccagaaaaccaaagcatgacagaaaaataaaatccaacctttccctggaataaaaacaagaccactt |
37221684 |
T |
|
| Q |
101 |
ccttggctgaaattgacaccagggttgtacctctgcagcaactcagcctcaatcatggtatccttagcaatagactccaaagtgtccttagaactaagag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37221683 |
ccttggctgaaattgacaccagggttgtacctctgcagcaactcagcctcaatcatggtatccttagaaatagactccaaagtgtccttagaactaagag |
37221584 |
T |
|
| Q |
201 |
ggtatgtgatgaacaaaccataatccttagaaacctctctgctcc |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37221583 |
ggtatgtgatgaacaaaccataatccttagaaacctctctgctcc |
37221539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 37201237 - 37201045
Alignment:
| Q |
48 |
catgacagaaaaat--aaaatccaacctttccctggaataaaaacaagaccacttccttggctgaaattgacaccagggttgtacctctgcagcaactca |
145 |
Q |
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|||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
37201237 |
catgacagaaaaattaaaaaactaacctttccctggaataaaaacaagaccacttcctttgctgaaattaacaccagggttgtacctctgcagcaactca |
37201138 |
T |
|
| Q |
146 |
gcctcaatcatggtatccttagcaatagactccaaagtgtccttagaactaagagggtatgtgatgaacaaaccataatccttagaaacctct |
238 |
Q |
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| T |
37201137 |
gcctcaatctctgcacccttagcaatagactccaaagtgtcctcacttctaagtggatatgtgatgaacaatccataatccatagaaacctct |
37201045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 69 - 239
Target Start/End: Complemental strand, 37227188 - 37227018
Alignment:
| Q |
69 |
aacctttccctggaataaaaacaagaccacttccttggctgaaattgacaccagggttgtacctctgcagcaactcagcctcaatcatggtatccttagc |
168 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| || | |||||| |||||| |
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| T |
37227188 |
aacctttccctggaatataaacaagaccccttccttggctgaaattgacaccagggttgtacctctgcagcaactcacccttaaccttggtatacttagc |
37227089 |
T |
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| Q |
169 |
aatagactccaaagtgtccttagaactaagagggtatgtgatgaacaaaccataatccttagaaacctctc |
239 |
Q |
| |
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||| || ||||||||||| | || |||||||| ||||| ||||||||||||||||| || |||||||||| |
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| T |
37227088 |
aatggattccaaagtgtcgtcaggtctaagaggatatgtaatgaacaaaccataatcttttgaaacctctc |
37227018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 37440762 - 37440593
Alignment:
| Q |
70 |
acctttccctggaataaaaacaagaccacttccttggctgaaattgacaccagggttgtacctctgcagcaactcagcctcaatcatggtatccttagca |
169 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||| |||||||||| ||| |
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| T |
37440762 |
acctttccctggaataaaaaccagaccacttccttggctgaaattcacacctgggttgtacctctgcagcaactcagcatccatcttggtatcctttgca |
37440663 |
T |
|
| Q |
170 |
atagactcca----aagtgtccttagaactaagagggtatgtgatgaacaaaccataatccttagaaacc |
235 |
Q |
| |
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|| ||||||| ||||||||| |||||||||||| ||||| | |||||||||||||||||| |||||| |
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| T |
37440662 |
atggactccaaactaagtgtcctcagaactaagaggatatgttacgaacaaaccataatccttggaaacc |
37440593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 37386765 - 37386930
Alignment:
| Q |
70 |
acctttccctggaataaaaacaagaccacttccttggctgaaattgacaccagggttgtacctctgcagcaactcagcctcaatcatggtatccttagca |
169 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| ||||||||| ||||||||||||||| |||| |||||||||| || || | |||| ||| ||| |
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| T |
37386765 |
acctttccctggaataaaaaccagcccacttcctttgctgaaattcacaccagggttgtacttctgtagcaactcaggcttaacttttgtatgcttcgca |
37386864 |
T |
|
| Q |
170 |
atagactccaaagtgtccttagaactaagagggtatgtgatgaacaaaccataatccttagaaacc |
235 |
Q |
| |
|
|| |||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| |||||| |
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| T |
37386865 |
atggactccaaagtgtcctcagaactaagaggatatgttatgaacaaaccataatccttggaaacc |
37386930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 184
Target Start/End: Complemental strand, 37215814 - 37215637
Alignment:
| Q |
4 |
aaattcagaacaagcacaaaatttcca-ctaccagaaaaccaaagcatgacagaaaaataaa--atccaacctttccctggaataaaaacaagaccactt |
100 |
Q |
| |
|
||||||| |||||||||||| |||||| ||| ||||| |||||| | ||||||||||| || ||| ||||||||||| ||||| |||||||||||||| |
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| T |
37215814 |
aaattcataacaagcacaaactttccaactatcagaagaccaaaaaaggacagaaaaatgaatgatctaacctttccctcgaatataaacaagaccactt |
37215715 |
T |
|
| Q |
101 |
ccttggctgaaattgacaccagggttgtacctctgcagcaactcagcctcaatcatggtatccttagcaatagactccaaagtg |
184 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||| |
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|
| T |
37215714 |
ccttggctgaaattcac------gttgtacctcttcagcaactcaatttcaatcatcgtatccttagcaatggactccaaagtg |
37215637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 234
Target Start/End: Complemental strand, 37196238 - 37196074
Alignment:
| Q |
70 |
acctttccctggaataaaaacaagaccacttccttggctgaaattgacaccagggttgtacctctgcagcaactcagcctcaatcatggtatccttagca |
169 |
Q |
| |
|
||||||||| |||||| |||| | |||||| ||||| || ||||| ||||||||||| ||| | |||||||||||||| ||||| || | |||| | |
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|
| T |
37196238 |
acctttcccaggaatataaaccaaaccactcccttgactaaaattcacaccagggttatacttttgcagcaactcagcatcaatttcagtcttattagaa |
37196139 |
T |
|
| Q |
170 |
atagactccaaagtgtccttagaactaagagggtatgtgatgaacaaaccataatccttagaaac |
234 |
Q |
| |
|
|| | ||||||| |||| || |||||||| ||||| || ||||||||||||||||| ||||| |
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|
| T |
37196138 |
atcaattccaaagaatcctcaggtctaagaggatatgtaataaacaaaccataatccttggaaac |
37196074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 37207617 - 37207570
Alignment:
| Q |
194 |
ctaagagggtatgtgatgaacaaaccataatccttagaaacctctctg |
241 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| |||||||||||| |
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|
| T |
37207617 |
ctaagtggatatgtgatgaacaaaccataatccttggaaacctctctg |
37207570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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