View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0494_low_1 (Length: 456)
Name: NF0494_low_1
Description: NF0494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0494_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 409
Target Start/End: Complemental strand, 56389092 - 56388697
Alignment:
| Q |
7 |
gtgagatgaatgggagaggtagatttgtttgacaagcaaaccaagatcgaactgcatgaaacgagtattgatggaagctttttaaattagttgcccataa |
106 |
Q |
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| T |
56389092 |
gtgagaagaatgggagaagtagatttgtttgacaagcaaaccaagatcgaactgcatgaaacgagtattgatggaagctttttaaattagttgcccataa |
56388993 |
T |
|
| Q |
107 |
gaagaattggaagaggtagagtacgtgaaagacaagtgagagtgttaaaattaaaataatata---------aatacgaaccatgtattcaatctaaatg |
197 |
Q |
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| T |
56388992 |
gaagaattggaagaggtagagtacgtgaaagacaagtgagagtgttaaaattaaaataatatagtataatataatacgaagcatgtattcaatctaaatg |
56388893 |
T |
|
| Q |
198 |
ttgatgttaaactctttcatacaagaaaact-nnnnnnnnnngttacataccaaacacnnnnnnnatttaataaaatacataagaattttttaagttagt |
296 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
56388892 |
ttgatgttaaactctttcatacaagaaaactcaaaaaaaaaagttacataccaaacacttt-----tttaataaaatacataagaattttttaagttagt |
56388798 |
T |
|
| Q |
297 |
aaaacaaaattcccaataatgtatatatannnnnnnaacgcaatacatatgcatcctcggaagtgtagaaaagtgattctcatagtatcattatatttgg |
396 |
Q |
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|||||||||||||||||| ||||| | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
56388797 |
aaaacaaaattcccaatagtgtattttt--ttttttaacgcaatacatatgcatcctcgg----------aagtgattctcatagtatcattatatttgg |
56388710 |
T |
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