View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0495_low_11 (Length: 311)

Name: NF0495_low_11
Description: NF0495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0495_low_11
NF0495_low_11
[»] scaffold1240 (1 HSPs)
scaffold1240 (58-245)||(17-204)
[»] chr2 (10 HSPs)
chr2 (58-245)||(8854644-8854831)
chr2 (58-245)||(9073221-9073408)
chr2 (58-245)||(30819918-30820105)
chr2 (58-243)||(12857526-12857711)
chr2 (67-245)||(5145682-5145860)
chr2 (71-245)||(7585851-7586025)
chr2 (58-243)||(31185544-31185729)
chr2 (67-245)||(31205267-31205446)
chr2 (58-245)||(4278714-4278901)
chr2 (102-184)||(2779425-2779507)
[»] chr1 (14 HSPs)
chr1 (58-245)||(17785890-17786077)
chr1 (58-245)||(31470833-31471020)
chr1 (58-245)||(45241685-45241872)
chr1 (71-245)||(47297866-47298040)
chr1 (71-245)||(2475441-2475615)
chr1 (71-245)||(48385497-48385671)
chr1 (71-245)||(17676628-17676802)
chr1 (71-245)||(33166834-33167008)
chr1 (71-245)||(38837005-38837179)
chr1 (71-224)||(8470899-8471051)
chr1 (81-230)||(18318080-18318229)
chr1 (58-245)||(51522887-51523074)
chr1 (71-195)||(48407013-48407137)
chr1 (173-245)||(10265804-10265876)
[»] chr6 (9 HSPs)
chr6 (58-245)||(17958599-17958786)
chr6 (58-243)||(634317-634502)
chr6 (58-243)||(6377731-6377916)
chr6 (71-245)||(34841056-34841230)
chr6 (71-245)||(8221751-8221925)
chr6 (71-245)||(24916931-24917105)
chr6 (71-245)||(18641834-18642008)
chr6 (58-202)||(29952327-29952472)
chr6 (71-224)||(24114716-24114869)
[»] chr4 (13 HSPs)
chr4 (58-245)||(2212584-2212771)
chr4 (58-245)||(46914778-46914965)
chr4 (58-245)||(53181732-53181919)
chr4 (58-227)||(36658099-36658268)
chr4 (71-245)||(3530577-3530751)
chr4 (71-245)||(3615566-3615740)
chr4 (71-245)||(8994333-8994507)
chr4 (71-245)||(13113111-13113285)
chr4 (72-245)||(33606632-33606805)
chr4 (71-245)||(16172169-16172343)
chr4 (58-245)||(34434838-34435025)
chr4 (71-245)||(28900568-28900742)
chr4 (71-245)||(28446824-28446998)
[»] chr3 (22 HSPs)
chr3 (58-245)||(17469061-17469248)
chr3 (58-245)||(25788009-25788196)
chr3 (58-245)||(33935822-33936009)
chr3 (58-243)||(25829966-25830151)
chr3 (58-245)||(42598664-42598851)
chr3 (58-245)||(47146918-47147105)
chr3 (71-245)||(6045650-6045824)
chr3 (71-245)||(30415778-30415952)
chr3 (71-245)||(42563557-42563731)
chr3 (71-245)||(43475038-43475212)
chr3 (104-245)||(50019643-50019784)
chr3 (71-245)||(10424974-10425148)
chr3 (71-245)||(26157417-26157591)
chr3 (72-245)||(33188387-33188560)
chr3 (67-243)||(30689139-30689315)
chr3 (71-245)||(4874420-4874594)
chr3 (102-245)||(51429519-51429662)
chr3 (112-245)||(4852727-4852860)
chr3 (58-236)||(21227770-21227948)
chr3 (58-98)||(51429654-51429694)
chr3 (195-245)||(33751209-33751259)
chr3 (58-90)||(50019786-50019818)
[»] chr8 (12 HSPs)
chr8 (59-245)||(35101042-35101228)
chr8 (58-245)||(13816684-13816871)
chr8 (59-232)||(26749200-26749373)
chr8 (58-245)||(5213430-5213617)
chr8 (71-245)||(38205538-38205712)
chr8 (71-245)||(1955601-1955775)
chr8 (71-245)||(15056194-15056368)
chr8 (71-245)||(30529944-30530118)
chr8 (67-245)||(17744217-17744395)
chr8 (58-140)||(5735767-5735849)
chr8 (174-245)||(1633962-1634033)
chr8 (62-100)||(27392271-27392309)
[»] chr7 (7 HSPs)
chr7 (58-243)||(22193863-22194048)
chr7 (71-245)||(36521076-36521250)
chr7 (71-245)||(32127561-32127735)
chr7 (73-245)||(22659494-22659666)
chr7 (71-245)||(26814712-26814886)
chr7 (71-164)||(40301220-40301313)
chr7 (67-165)||(1940162-1940259)
[»] chr5 (9 HSPs)
chr5 (58-219)||(31012330-31012491)
chr5 (71-245)||(32973672-32973846)
chr5 (71-245)||(27945201-27945375)
chr5 (71-245)||(40891371-40891545)
chr5 (71-245)||(30646179-30646353)
chr5 (58-245)||(4579654-4579829)
chr5 (71-245)||(29616839-29617013)
chr5 (169-245)||(34710648-34710724)
chr5 (58-105)||(21365263-21365310)
[»] scaffold0004 (1 HSPs)
scaffold0004 (71-245)||(105423-105597)
[»] scaffold0021 (1 HSPs)
scaffold0021 (71-230)||(110521-110680)
[»] scaffold0007 (1 HSPs)
scaffold0007 (102-236)||(166670-166804)
[»] scaffold0658 (1 HSPs)
scaffold0658 (181-237)||(6549-6605)


Alignment Details
Target: scaffold1240 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: scaffold1240
Description:

Target: scaffold1240; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 17 - 204
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  17 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctctccgcgatctagttgcatgccgaaaccgtttta 116  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| ||||||||||||||    
T  117 attatatgagcaaagtaataaataaatggattggtgcttatgaaagcactaagcgtttgcaaggaagcggttggtcggaagatgatgt 204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 7e-83; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 58 - 245
Target Start/End: Complemental strand, 8854831 - 8854644
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  8854831 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 8854732  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||    
T  8854731 attatatgagtaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 8854644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 9073221 - 9073408
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  9073221 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 9073320  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||    
T  9073321 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 9073408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 30819918 - 30820105
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  30819918 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 30820017  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||    
T  30820018 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 30820105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 58 - 243
Target Start/End: Complemental strand, 12857711 - 12857526
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  12857711 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 12857612  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgat 243  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||    
T  12857611 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgat 12857526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 67 - 245
Target Start/End: Original strand, 5145682 - 5145860
Alignment:
Q  67 gaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatga 166  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||| ||| |||| || ||| || |||| |||||||| ||||||||||||||||    
T  5145682 gaaacatattggggtaaaattgctgagtattgtaatgagcattgctcatttgatcctccgcgtgatgtaattgcttgccgaaaccgttttaattatatga 5145781  T
Q  167 gtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||    
T  5145782 gcaaagtaataaataaatggattggtgcttatgaaagcgctaagcgtttgcaaggaagcggttggtcggaagatgatgt 5145860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 7585851 - 7586025
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||  ||    
T  7585851 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 7585950  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| ||||||||||||| ||||| ||| || |||||||||||||||| ||||||||||||||    
T  7585951 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 7586025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 58 - 243
Target Start/End: Original strand, 31185544 - 31185729
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    ||||| || ||||||||||||| |||||||| ||||||||||| ||||||| ||||||| |||||||| || |||||||||||||||| ||| |||||||    
T  31185544 cagaggggtgaaacatattggggtaaaattgatgagtattgtattgagtatggctcatttgattctccgcgggatctagttgcatgccaaaaccgtttta 31185643  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgat 243  Q
    |||||||||| ||||||||||||||||||||| ||||||||||   ||| ||| ||||||||||||||||||| ||||||||||||    
T  31185644 attatatgagcaaagtaataaataaatggattagtgcttatgatgccgctaagcgtttgcaaggaagcggttggtcggaagatgat 31185729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 67 - 245
Target Start/End: Original strand, 31205267 - 31205446
Alignment:
Q  67 gaaacatattgggttaaaattgctgagtattg-taatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatg 165  Q
    ||||||||||||| |||||||| ||||||||| |||||||||  ||||||| |||||||| || ||||||||||||||||||||  ||||||||||||||    
T  31205267 gaaacatattggggtaaaattgatgagtattggtaatgagtacggctcatttgattctccgcgggatctagttgcatgccgaaactgttttaattatatg 31205366  T
Q  166 agtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    || ||||||||||||||||||||| ||||||||||   ||| ||| ||||||||||||||||||| ||||||||||||||    
T  31205367 agcaaagtaataaataaatggattagtgcttatgatgccgctaagcgtttgcaaggaagcggttggtcggaagatgatgt 31205446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 58 - 245
Target Start/End: Complemental strand, 4278901 - 4278714
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||| ||| ||| ||||||||| |||||||| |||||||||||||||| |||||||||||||| || | || ||| || ||||||||||||| |||||||    
T  4278901 cagacaggtgaagcatattggggtaaaattgttgagtattgtaatgagcattgctcattcgatccttcgcgtgatgtaattgcatgccgaaaccgtttta 4278802  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||| |||||| |||||||||||||||| ||||||||  |||| ||| ||||||||  ||| ||||| ||||| | ||||||    
T  4278801 attatatgagcaaagtactaaataaatggattggcgcttatgatggcgctaagcgtttgcaaataagtggttggtcggaggctgatgt 4278714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 2779425 - 2779507
Alignment:
Q  102 tgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaaagtaataaataaat 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  2779425 tgagtattgctcattcgattctccccgcgatctagttgcatgccgaaaccgttttaattatatgagcaaagtaataaataaat 2779507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 7e-83; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 58 - 245
Target Start/End: Complemental strand, 17786077 - 17785890
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17786077 cagagaggagaaacaaattggggtaaaattgctgagtattgtaatgagtattgctcattcgattatccccgcgatctagttgcatgccgaaatcgtttta 17785978  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| ||||||||||||||    
T  17785977 attatatgagcaaagtaataaataaatggattggtgcttatgaaagcactaagcgtttgcaaggaagcggttggtcggaagatgatgt 17785890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 58 - 245
Target Start/End: Complemental strand, 31471020 - 31470833
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  31471020 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 31470921  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||    
T  31470920 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 31470833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 58 - 245
Target Start/End: Complemental strand, 45241872 - 45241685
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  45241872 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 45241773  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||    
T  45241772 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 45241685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 47297866 - 47298040
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| |||| |||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||  |||||||||||||||| ||    
T  47297866 catattggggtaaagttgctgagtattgtaatgagcattgctcattcgattctccacgcgatgtagttgcatgccgaaactgttttaattatatgagcaa 47297965  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | ||||||||||||||||||||||||||||  |||| ||| ||||||||||||||||||| ||||||||||||||    
T  47297966 attaataaataaatggattggtgcttatgatggcgctaagcgtttgcaaggaagcggttggtcggaagatgatgt 47298040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 2475441 - 2475615
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||  ||    
T  2475441 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 2475540  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| ||||||||||||| ||||| ||| || |||||||||||||||| ||||||||||||||    
T  2475541 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 2475615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 48385497 - 48385671
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||  ||    
T  48385497 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 48385596  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| ||||||||||||| ||||| ||| || |||||||||||||||| ||||||||||||||    
T  48385597 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 48385671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 17676628 - 17676802
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||| ||||||  ||||||||||||||| ||||||||||||||||| ||    
T  17676628 catattggggtaaaattgctgagtattataatgagcattgctcattcgattctccgcgcgatgcagttgcatgccgaaaccgttttaattatatgagcaa 17676727  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| |||||||||||||  || | ||| |||||||||||||| |||| ||||||||||||||    
T  17676728 attaataaataaatgggttggtgcttatgatggcactaagcgtttgcaaggaagcagttggtcggaagatgatgt 17676802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 33167008 - 33166834
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||  || ||| || |||| |||||||| ||||||| ||||||| | ||    
T  33167008 catattggggtaaaattgctgagtattgtaatgagtattgctcattcgatcctctgcgtgatgtaattgcttgccgaaaccgttttagttatatgtgcaa 33166909  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||||| ||||||| ||||||||||| ||| ||| ||||||||||||||||||| | ||||||||||||    
T  33166908 agtaataaataattggattgatgcttatgaaatcgctaagcgtttgcaaggaagcggttggtaggaagatgatgt 33166834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 38837005 - 38837179
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||  ||||||||||||||||||||||||| ||||||||||| ||||||| ||||||  || |||||||| ||| ||||||||||||||||| ||    
T  38837005 catattggtgtaaaattgctgagtattgtaatgagcattgctcattcaattctccgcgcgatgcagctgcatgccaaaaccgttttaattatatgagcaa 38837104  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| |||||||||||||  |||| ||| ||||||||||||||||||  || |||||||||||    
T  38837105 attaataaataaatgggttggtgcttatgatggcgctaagcgtttgcaaggaagcggttcgtcagaagatgatgt 38837179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 8471051 - 8470899
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||| ||||||||||||||||| ||    
T  8471051 catatttgggtataattgctgagtattgtaatgagtattgctcattcgattctccgcgcgaagtagttgcatgccgaaaccgttttaattatatgagcaa 8470952  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaag 224  Q
    | |||||||||||||| || ||||||| ||  |||| ||| |||||||||||||    
T  8470951 attaataaataaatgggtt-gtgcttaagatggcgctaagcgtttgcaaggaag 8470899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 81 - 230
Target Start/End: Original strand, 18318080 - 18318229
Alignment:
Q  81 taaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaaagtaataaat 180  Q
    |||||||| | |||||||||||||| ||||||||||||||||||| |||||| || |||||||||||||  |||||||||||||||| ||| || |||||    
T  18318080 taaaattgttaagtattgtaatgagcattgctcattcgattctccgcgcgatgtaattgcatgccgaaactgttttaattatatgagcaaaatactaaat 18318179  T
Q  181 aaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttg 230  Q
    ||||||||||  ||||||||| |||| ||| ||||||||||||| |||||    
T  18318180 aaatggattgacgcttatgaaggcgctaagcgtttgcaaggaagtggttg 18318229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 58 - 245
Target Start/End: Complemental strand, 51523074 - 51522887
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||| ||| ||| ||||||||| |||||||| |||||||||||||||  |||||| ||||||| |||| || ||| || ||||||||||||| |||||||    
T  51523074 cagacaggtgaagcatattggggtaaaattgatgagtattgtaatgatcattgcttattcgatcctccgcgtgatgtaattgcatgccgaaaccgtttta 51522975  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
     ||||||||| ||| || |||||||||||||||| | ||||||| |||| ||| ||||||||||||| ||||| ||||| | ||||||    
T  51522974 tttatatgagcaaaatactaaataaatggattggcgtttatgaaggcgctaagcgtttgcaaggaagtggttggtcggaggctgatgt 51522887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 71 - 195
Target Start/End: Complemental strand, 48407137 - 48407013
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| |||||||| |||||||||||| ||| ||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||||  ||    
T  48407137 catattggggtaaaattgttgagtattgtaacgagcattgctcattcgattctccgcgcaatgtagttgcatgccgaaaccgttttaattatatgaacaa 48407038  T
Q  171 agtaataaataaatggattggtgct 195  Q
    | |||||||||||||| ||||||||    
T  48407037 attaataaataaatgggttggtgct 48407013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 10265804 - 10265876
Alignment:
Q  173 taataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||||||| |||||||||||||  |||| ||| ||||||||||||||||||| || |||||||||||    
T  10265804 taataaataaatgggttggtgcttatgatggcgctaagcgtttgcaaggaagcggttggtcagaagatgatgt 10265876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 17958599 - 17958786
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  17958599 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 17958698  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||    
T  17958699 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 17958786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 58 - 243
Target Start/End: Complemental strand, 634502 - 634317
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  634502 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 634403  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgat 243  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||    
T  634402 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgat 634317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 58 - 243
Target Start/End: Original strand, 6377731 - 6377916
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  6377731 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 6377830  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgat 243  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||    
T  6377831 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgat 6377916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 34841230 - 34841056
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||  ||    
T  34841230 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 34841131  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| ||||||||||||| ||||| ||| || |||||||||||||||| ||||||||||||||    
T  34841130 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 34841056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 8221925 - 8221751
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| || ||||||||||||||||| ||    
T  8221925 catattggggtaaaattgctgagtattgtaatgagaattgctcattcgattctccgcgcgatgtagttgcatgccgcaaccgttttaattatatgagcaa 8221826  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| |||||||||||||  |||| |||  ||| |||||||||||||| ||||||||||||||    
T  8221825 attaataaataaatgggttggtgcttatgatggcgctaagcattttcaaggaagcggttggtcggaagatgatgt 8221751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 24916931 - 24917105
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| |||||||||||||||||| |||||| |||||||||||||| |||| || ||| || |||| |||||||| | ||||||||||||||| ||    
T  24916931 catattggggtaaaattgctgagtattgcaatgagcattgctcattcgatcctccgcgtgatataattgcttgccgaaaccattttaattatatgagcaa 24917030  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||| ||||||||||||||    
T  24917031 agtaataaataaatggattggtgcttatgaaagcgctaaacgtttgcaaggaagcggttggtcggaagatgatgt 24917105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 18642008 - 18641834
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| || ||| || |||| |||||||| | ||||||||||||||| ||    
T  18642008 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgatcctccgcgtgatgtaattgcttgccgaaaccattttaattatatgagcaa 18641909  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||||||||||||||||||||||||| ||| ||| |||||||| |||||||||| | ||||||||||||    
T  18641908 agtaataaataaatggattggtgcttatgaaatcgctaagcgtttgcaaagaagcggttggttggaagatgatgt 18641834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 58 - 202
Target Start/End: Original strand, 29952327 - 29952472
Alignment:
Q  58 cagagaggagaaacatatt-gggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttt 156  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||||| |||||||||||  ||| ||||||||||||||||| ||||||||| ||||||    
T  29952327 cagagaggagaaacatattaggggtaaatttgctgagtattgtaatgaatattgctcatttaattatccccgcgatctagttgtatgccgaaaccgtttt 29952426  T
Q  157 aattatatgagtaaagtaataaataaatggattggtgcttatgaaa 202  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  29952427 aattatatgagcaaagtaataaataaatggattggtgcttatgaaa 29952472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 24114869 - 24114716
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| | | |||| || ||||||||| ||| ||||||||||||||||| ||    
T  24114869 catattggggtaaaattgctgagtattgtaatgagcattactcattcgattctgcgctcgatgtaattgcatgccaaaaccgttttaattatatgagcaa 24114770  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaag 224  Q
    | ||   |||||||||||||| ||||||||| | || ||  |||||||||||||    
T  24114769 aataccgaataaatggattggcgcttatgaaggtgctaaacgtttgcaaggaag 24114716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 2212584 - 2212771
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  2212584 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 2212683  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||    
T  2212684 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 2212771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 46914778 - 46914965
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||    
T  46914778 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaactgtttta 46914877  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||    
T  46914878 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 46914965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 53181732 - 53181919
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  53181732 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 53181831  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||| || ||| || |||||||||||||||| ||||||||||||||    
T  53181832 attatatgagcaaaataataaataaatggattggtgcttatgaaagtgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 53181919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 36658268 - 36658099
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| |||| |||||||    
T  36658268 cagagaggaaaaacatattggggtaaaattgctgagtattgtaatgagtgttgctcatttgattctccccgggatctagttgcatgcagaaaccgtttta 36658169  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcgg 227  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  36658168 attatatgagcaaagtaataaataaatggattggtgcttatgaaagcgttaagcgtttgcaaggaagcgg 36658099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 3530577 - 3530751
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||  ||    
T  3530577 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 3530676  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| ||||||||||||| ||||| ||| || |||||||||||||||| ||||||||||||||    
T  3530677 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 3530751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 3615566 - 3615740
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||  ||    
T  3615566 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 3615665  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| ||||||||||||| ||||| ||| || |||||||||||||||| ||||||||||||||    
T  3615666 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 3615740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 8994507 - 8994333
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||  ||    
T  8994507 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 8994408  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| ||||||||||||| ||||| ||| || |||||||||||||||| ||||||||||||||    
T  8994407 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 8994333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 13113285 - 13113111
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||  ||    
T  13113285 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 13113186  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| ||||||||||||| ||||| ||| || |||||||||||||||| ||||||||||||||    
T  13113185 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 13113111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 72 - 245
Target Start/End: Complemental strand, 33606805 - 33606632
Alignment:
Q  72 atattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaaa 171  Q
    |||||||| |||||||| |||||||||||||||  ||| |||||||||| |||| || ||| || |||| |||||||||| ||||||||||||||| |||    
T  33606805 atattggggtaaaattgttgagtattgtaatgaacattactcattcgatcctccgcgtgatgtaattgcttgccgaaatcattttaattatatgagcaaa 33606706  T
Q  172 gtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||    
T  33606705 gtaataaataaatggattggtgcttatgaaagcgctaagcgtttgcaaggaagcggttggtcggaagatgatgt 33606632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 16172169 - 16172343
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||| || | |||| ||||||| ||    
T  16172169 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccggtataataatatgagcaa 16172268  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| |||||||||||||  |||| ||| || |||||||||||||||| ||||||||||||||    
T  16172269 attaataaataaatgggttggtgcttatgatggcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 16172343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 34434838 - 34435025
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||| ||| ||| ||||||||| ||||||||||||||||||||||||| |||||  ||||||| |||| || ||| || ||||||||||||| |||||||    
T  34434838 cagacaggtgaagcatattggggtaaaattgctgagtattgtaatgagcattgcaaattcgatcctccgcgtgatgtaattgcatgccgaaaccgtttta 34434937  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||| |||||||||||||||||||||| || |||||||||||| |||  |||||||||||||||||| | ||||||||||||    
T  34434938 attatatgagcaaagtaataaataaatggattgatgtttatgaaagcgctaagcatttgcaaggaagcggttggttggaagatgatgt 34435025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 28900742 - 28900568
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| |||||||| |||||||||||||||| |||||||||||||||||||  | ||| |||||||||||||||| | ||||||||||||||| ||    
T  28900742 catattggggtaaaattgttgagtattgtaatgagcattgctcattcgattctccgtgtgatgtagttgcatgccgaaaccattttaattatatgagcaa 28900643  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | ||||||||||||   |||||||||||||  |||| ||| ||||||||||||||||||| ||||||||||||||    
T  28900642 attaataaataaatttgttggtgcttatgatggcgctaagcgtttgcaaggaagcggttggtcggaagatgatgt 28900568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 28446998 - 28446824
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| |||||||| |||||||||||||||| |||||||||||||| |||| || | | || |||||||| |||| ||||||||||||||||| ||    
T  28446998 catattggggtaaaattgttgagtattgtaatgagcattgctcattcgatcctccacgtggtgtaattgcatgcagaaaccgttttaattatatgagcaa 28446899  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | || |  ||||||||||||  ||||||||| |||| ||| ||||||||||||| ||||| ||||| | ||||||    
T  28446898 aatactgtataaatggattgacgcttatgaaggcgctaagagtttgcaaggaagtggttggtcggaggctgatgt 28446824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 58 - 245
Target Start/End: Complemental strand, 17469248 - 17469061
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  17469248 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 17469149  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||    
T  17469148 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 17469061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 25788009 - 25788196
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  25788009 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 25788108  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||    
T  25788109 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 25788196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 58 - 245
Target Start/End: Complemental strand, 33936009 - 33935822
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33936009 cagagaggagaaacatattagggtaaaattgttgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaaccgtttta 33935910  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||    
T  33935909 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtttgcaaggaagcggttggtcggaagatgatgt 33935822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 58 - 243
Target Start/End: Original strand, 25829966 - 25830151
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  25829966 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 25830065  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgat 243  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||    
T  25830066 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgat 25830151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 42598664 - 42598851
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  42598664 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgctgaaaccgtttta 42598763  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||    
T  42598764 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 42598851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 58 - 245
Target Start/End: Complemental strand, 47147105 - 47146918
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||    
T  47147105 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtatagctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 47147006  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||    
T  47147005 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 47146918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 6045650 - 6045824
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||  ||    
T  6045650 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 6045749  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| ||||||||||||| ||||| ||| || |||||||||||||||| ||||||||||||||    
T  6045750 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 6045824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 30415778 - 30415952
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||  ||    
T  30415778 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 30415877  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| ||||||||||||| ||||| ||| || |||||||||||||||| ||||||||||||||    
T  30415878 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 30415952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 42563731 - 42563557
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||  ||    
T  42563731 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 42563632  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| ||||||||||||| ||||| ||| || |||||||||||||||| ||||||||||||||    
T  42563631 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 42563557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 43475212 - 43475038
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| ||    
T  43475212 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgagcaa 43475113  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| |||||||||||||  || | ||| ||||||||||||||||||| |||||| |||||||    
T  43475112 attaataaataaatgggttggtgcttatgatggcactaagcgtttgcaaggaagcggttggtcggaaaatgatgt 43475038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 104 - 245
Target Start/End: Complemental strand, 50019784 - 50019643
Alignment:
Q  104 agtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaaagtaataaataaatggattggtgcttatgaaag 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  50019784 agtattgctcattcgattctccccgcgatctagttgcatgccgaaaccgttttaattatatgaacaaagtaataaataaatggattggtgcttatgaaag 50019685  T
Q  204 cgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    ||| ||| ||||||||||||||||||| || |||||||||||    
T  50019684 cgctaagcgtttgcaaggaagcggttggtctgaagatgatgt 50019643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 10424974 - 10425148
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||  ||    
T  10424974 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 10425073  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| ||||||||||||| ||||| |||  | |||||||||||||||| ||||||||||||||    
T  10425074 attaataaataaatgggttggtgcttatgatagcgctaagcatatgcaaggaagcggttggtcggaagatgatgt 10425148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 26157417 - 26157591
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| |||||||||||||||||| |||||| |||||||||||||| |||| || ||| || |||| |||||||| ||||||||||||||||| ||    
T  26157417 catattggggtaaaattgctgagtattgcaatgagcattgctcattcgatcctccgcgtgatataattgcttgccgaaaccgttttaattatatgagcaa 26157516  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    ||||||||||||||||||||||||||||||||| || ||| || |||||||||||||||| ||||||||||||||    
T  26157517 agtaataaataaatggattggtgcttatgaaagtgctaagcgtctgcaaggaagcggttggtcggaagatgatgt 26157591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 72 - 245
Target Start/End: Original strand, 33188387 - 33188560
Alignment:
Q  72 atattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaaa 171  Q
    |||||||| ||||||||||||||||||||||||  |||||| |||||||||||| ||||||  ||||||||||||||| ||||||||||||||||| |||    
T  33188387 atattggggtaaaattgctgagtattgtaatgaacattgctaattcgattctccgcgcgatgcagttgcatgccgaaaccgttttaattatatgagcaaa 33188486  T
Q  172 gtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
     |||||||||||||| |||||||||||||  |||| ||| ||||||||||||||||||| ||||||||||||||    
T  33188487 ttaataaataaatgggttggtgcttatgatggcgctaagcgtttgcaaggaagcggttggtcggaagatgatgt 33188560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 67 - 243
Target Start/End: Original strand, 30689139 - 30689315
Alignment:
Q  67 gaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatga 166  Q
    |||| |||||||| | |||||||||||||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||| |||||||||||| |    
T  30689139 gaaatatattggggtgaaattgctgagtattgtaatgagtatggctcatttgattctccgcgggatctagttgcatgccgaaatcattttaattatataa 30689238  T
Q  167 gtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgat 243  Q
    | ||||||||||||||||||||||||||||||||   ||| ||| ||||||||||||| ||||| ||||||||||||    
T  30689239 gcaaagtaataaataaatggattggtgcttatgatgccgctaagcgtttgcaaggaagtggttggtcggaagatgat 30689315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 4874420 - 4874594
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    |||||||||||||||||| |||||||||||||||| || |||||||||||||||| |||||   ||||||||||||||| ||||||||||||||||| ||    
T  4874420 catattgggttaaaattgttgagtattgtaatgagcatcgctcattcgattctccgcgcgactcagttgcatgccgaaaccgttttaattatatgagcaa 4874519  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| |||||||||||||  | || ||| ||||||||||||||||||| ||| ||||||||||    
T  4874520 attaataaataaatgggttggtgcttatgatggtgctaagcgtttgcaaggaagcggttggtcgaaagatgatgt 4874594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 102 - 245
Target Start/End: Complemental strand, 51429662 - 51429519
Alignment:
Q  102 tgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaaagtaataaataaatggattggtgcttatgaa 201  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||  ||| |||||||||||||||||||||||||||||    
T  51429662 tgagtattgctcattcgattctccacgcgatctagttgcctgccgaaaccgttttaattatatgaacaaaataataaataaatggattggtgcttatgaa 51429563  T
Q  202 agcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    ||||| ||| || |||||||||||||||| |||||| |||||||    
T  51429562 agcgctaagcgtatgcaaggaagcggttggtcggaaaatgatgt 51429519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 245
Target Start/End: Original strand, 4852727 - 4852860
Alignment:
Q  112 tcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagt 211  Q
    |||||||||||||| |||||   || |||||||||||| ||||||||||||||||| ||| |||||||||||||| |||||||||||||  | || |||     
T  4852727 tcattcgattctccgcgcgactcaggtgcatgccgaaaccgttttaattatatgagcaaattaataaataaatgggttggtgcttatgatggtgctaagc 4852826  T
Q  212 gtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    ||||||||||||||||||| ||| ||||||||||    
T  4852827 gtttgcaaggaagcggttggtcgaaagatgatgt 4852860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 236
Target Start/End: Complemental strand, 21227948 - 21227770
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||| ||| ||||||||||||| || ||||| ||| |||||||||||| |||||||||| ||| |||| | ||||  ||||||||| ||||| |||| ||    
T  21227948 cagaaaggtgaaacatattggggtagaattgttgattattgtaatgagaattgctcatttgatcctccgcacgatggagttgcatgtcgaaaccgttata 21227849  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcgga 236  Q
    |||||||||  ||| || ||  |||||||||||| |||||||| |||   ||  |||| |||||||||||||| |||||    
T  21227848 attatatgaacaaaatactaggtaaatggattggcgcttatgatagcattaatcgttttcaaggaagcggttggtcgga 21227770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 51429694 - 51429654
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattg 98  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  51429694 cagagaggagaaacatattggggtaaaattgctgagtattg 51429654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 33751259 - 33751209
Alignment:
Q  195 ttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||||| ||| ||||||||||||||||||| || |||||||||||    
T  33751259 ttatgaaagcgctaagcgtttgcaaggaagcggttggtcagaagatgatgt 33751209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 50019818 - 50019786
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgct 90  Q
    |||||||||||||||||||||| ||||||||||    
T  50019818 cagagaggagaaacatattggggtaaaattgct 50019786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 7e-80; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 59 - 245
Target Start/End: Complemental strand, 35101228 - 35101042
Alignment:
Q  59 agagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaa 158  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  35101228 agagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgttttaa 35101129  T
Q  159 ttatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||    
T  35101128 ttatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 35101042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 58 - 245
Target Start/End: Complemental strand, 13816871 - 13816684
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13816871 cagagaggagaaacatatttgggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaaccgtttta 13816772  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| |  |||||||||||||||| ||||||||||||||    
T  13816771 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgaatgcaaggaagcggttggtcggaagatgatgt 13816684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 59 - 232
Target Start/End: Original strand, 26749200 - 26749373
Alignment:
Q  59 agagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaa 158  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26749200 agagaggagaaacatattggtgtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaaccgttttaa 26749299  T
Q  159 ttatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgat 232  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||| |||||    
T  26749300 ttatatgagcaaagtaataaataaatggattggtgcttatgaaagcgctaaacgtttgcaaggaagcgattgat 26749373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 58 - 245
Target Start/End: Complemental strand, 5213617 - 5213430
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  5213617 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 5213518  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||| ||| ||| ||||||||||||||||||| |||||||||||||| ||| || |||||| ||||||||| |||||| |||||||    
T  5213517 attatacgagcaaaataataaataaatggattggggcttatgaaagcgctaagcgtatgcaagtaagcggttggtcggaaaatgatgt 5213430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 38205538 - 38205712
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| || ||| || |||| |||||||| ||||||||||||||||| ||    
T  38205538 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgatcctccgcgtgatgtaattgcttgccgaaaccgttttaattatatgagcaa 38205637  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    ||||||||||||||||||||||||||||||||  || ||| ||||||||||||||||||||||||||||||||||    
T  38205638 agtaataaataaatggattggtgcttatgaaaaagctaagcgtttgcaaggaagcggttgatcggaagatgatgt 38205712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 1955601 - 1955775
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||  ||    
T  1955601 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 1955700  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| ||||||||||||| ||||| ||| || |||||||||||||||| ||||||||||||||    
T  1955701 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 1955775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 15056368 - 15056194
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| |||||||| |||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||  ||    
T  15056368 catattggggtaaaattgttgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 15056269  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| ||||||||||||| ||||| ||| || |||||||||||||||| ||||||||||||||    
T  15056268 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 15056194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 30529944 - 30530118
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| || ||| || |||| |||||||| ||||||||||||||||| ||    
T  30529944 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgatcctccgcgtgatgtaattgcttgccgaaaccgttttaattatatgagcaa 30530043  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||| ||||||||||||||||||||| ||||||| |||||||||||| ||||   ||||||||||||||    
T  30530044 agtaataaatgaatggattggtgcttatgaaaacgccaagcgtttgcaaggaaacggtaagtcggaagatgatgt 30530118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 67 - 245
Target Start/End: Complemental strand, 17744395 - 17744217
Alignment:
Q  67 gaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatga 166  Q
    |||||||||| || |||||||||||||||||||||||||||| ||||||| |||||||| |  ||||||||||||||||  ||  |||||||||||||||    
T  17744395 gaaacatattagggtaaaattgctgagtattgtaatgagtatggctcatttgattctccactggatctagttgcatgccagaactgttttaattatatga 17744296  T
Q  167 gtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||||||| |||||||||||||   ||| ||| ||||||||| ||| ||||| ||||||||||||||    
T  17744295 gcaaagtaataaataaatgggttggtgcttatgatgtcgctaagcgtttgcaagaaagtggttggtcggaagatgatgt 17744217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 5735849 - 5735767
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgc 140  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  5735849 cagaggggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcatttgattctccccgcgatcaagttgc 5735767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 1633962 - 1634033
Alignment:
Q  174 aataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  1633962 aataaataaatggattggtgcttatgaaagcgctaagtgtttgcaaggaagcggttggtcggaagatgatgt 1634033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 27392309 - 27392271
Alignment:
Q  62 gaggagaaacatattgggttaaaattgctgagtattgta 100  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  27392309 gaggtgaaacatattggggtaaaattgctgagtattgta 27392271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 58 - 243
Target Start/End: Complemental strand, 22194048 - 22193863
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  22194048 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 22193949  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgat 243  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||    
T  22193948 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgat 22193863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 36521250 - 36521076
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||  ||    
T  36521250 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 36521151  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| ||||||||||||| ||||| ||| || |||||||||||||||| ||||||||||||||    
T  36521150 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 36521076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 32127561 - 32127735
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| |||||||||||||||||| |||||| |||||||||||||| |||| || ||| || |||| |||||||| ||||||||||||||||| ||    
T  32127561 catattggggtaaaattgctgagtattgcaatgagcattgctcattcgatcctccgcgtgatataattgcttgccgaaaccgttttaattatatgagcaa 32127660  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    ||||||||||||||||||||||||||||||||| |  ||| ||||||||||||||||||| ||||||||||||||    
T  32127661 agtaataaataaatggattggtgcttatgaaagtgttaagcgtttgcaaggaagcggttggtcggaagatgatgt 32127735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 73 - 245
Target Start/End: Complemental strand, 22659666 - 22659494
Alignment:
Q  73 tattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaaag 172  Q
    ||||||| |||||||| |||||||| ||||||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| |||     
T  22659666 tattggggtaaaattgttgagtattttaatgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgagcaaat 22659567  T
Q  173 taataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||||||| |||||||||||||  |||  ||| || |||||||||||||||| ||||||||||||||    
T  22659566 taataaataaatgggttggtgcttatgatggcgttaagcgtatgcaaggaagcggttggtcggaagatgatgt 22659494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 26814886 - 26814712
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| |||||||||| ||||||| |||||| |||||||||||||  |||| || ||| || |||| |||||||| ||||||||||||||||| ||    
T  26814886 catattggggtaaaattgctaagtattgcaatgagcattgctcattcgaccctccgcgtgatataattgcttgccgaaaccgttttaattatatgagcaa 26814787  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||||||||||||| |||||||||||| || ||| |||||||||||| |||||| ||||||||||||||    
T  26814786 agtaataaataaatggattgatgcttatgaaagtgctaagcgtttgcaaggaaacggttggtcggaagatgatgt 26814712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 40301220 - 40301313
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatat 164  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||  ||||| |||||||||||||||| | ||||||||||||    
T  40301220 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgattctccgtgcgatgtagttgcatgccgaaaccattttaattatat 40301313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 1940162 - 1940259
Alignment:
Q  67 gaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatg 165  Q
    ||||||||||| | || ||||| ||||| | |||||||| |||  ||||||||| |||| ||||||  ||||| ||| ||||| |||||||||||||||    
T  1940162 gaaacatattgaggtagaattgttgagtgt-gtaatgagcatttatcattcgatcctccgcgcgatgaagttgaatgtcgaaaccgttttaattatatg 1940259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 58 - 219
Target Start/End: Original strand, 31012330 - 31012491
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  31012330 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 31012429  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaa 219  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||||    
T  31012430 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaa 31012491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 32973672 - 32973846
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||  ||    
T  32973672 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgattctccgcgcgatatagttgcatgccgaaaccgttttaattatatgaacaa 32973771  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| ||||||||||||| ||||| ||| || |||||||||||||||| ||||||||||||||    
T  32973772 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 32973846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 27945375 - 27945201
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||  ||    
T  27945375 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 27945276  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| ||||||||||||| ||||| ||| || |||||||||||||||| ||||||||||||||    
T  27945275 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 27945201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 40891545 - 40891371
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||  ||    
T  40891545 catattggggtaaaattgctgagtattgtaacgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 40891446  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| ||||||||||||| ||||| ||| || |||||||||||||||| ||||||||||||||    
T  40891445 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 40891371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 30646179 - 30646353
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| | |||| ||||||||||||||||  |||||||||||||||| ||    
T  30646179 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgattctccgctcgatgtagttgcatgccgaaactgttttaattatatgagcaa 30646278  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |  ||||||||||||| |||||||||||||  |||| ||| ||||||||||||||||||| ||||||||||||||    
T  30646279 atgaataaataaatgggttggtgcttatgatggcgctaagcgtttgcaaggaagcggttggtcggaagatgatgt 30646353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 58 - 245
Target Start/End: Complemental strand, 4579829 - 4579654
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgtttta 157  Q
    |||||||||||||||||||||| |||||||||||||||||||            ||||||||||||||||||||||||||||  |||||||| |||||||    
T  4579829 cagagaggagaaacatattggggtaaaattgctgagtattgt------------tcattcgattctccccgcgatctagttgtctgccgaaaccgtttta 4579742  T
Q  158 attatatgagtaaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||    
T  4579741 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 4579654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 29616839 - 29617013
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    |||||| || ||||||| ||||||||||||| ||| |||| ||||||||||||||  ||||| |||||||||||||||| ||||||||||||||||  ||    
T  29616839 catatttgggtaaaattcctgagtattgtaacgagcattgatcattcgattctccgtgcgatgtagttgcatgccgaaaccgttttaattatatgaacaa 29616938  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    | |||||||||||||| ||||||||||||| ||||| ||| || |||||||||||||||  ||||||||||||||    
T  29616939 attaataaataaatgggttggtgcttatgatagcgctaagcgtatgcaaggaagcggtttgtcggaagatgatgt 29617013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 34710724 - 34710648
Alignment:
Q  169 aaagtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    ||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||    
T  34710724 aaagtaataaataaatggattggtgcttatgaaagtgctaagcgtttgcaaggaagcggttggtcggaagatgatgt 34710648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 21365310 - 21365263
Alignment:
Q  58 cagagaggagaaacatattgggttaaaattgctgagtattgtaatgag 105  Q
    |||| ||| ||||||||||||| |||||||||||||||||||||||||    
T  21365310 cagataggtgaaacatattggggtaaaattgctgagtattgtaatgag 21365263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 105597 - 105423
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| |||||||||||||||||| |||||| |||||||||||||| |||| || ||| || |||| |||||||| ||||||||||||||||| ||    
T  105597 catattggggtaaaattgctgagtattgcaatgagcattgctcattcgatcctccgcgtgatataattgcttgccgaaaccgttttaattatatgagcaa 105498  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaagatgatgt 245  Q
    ||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||    
T  105497 agtaataaataaatggattggtgcttatgaaagtgctaagcgtttgcaaggaagcggttggtcggaagatgatgt 105423  T

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Target: scaffold0021 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 71 - 230
Target Start/End: Original strand, 110521 - 110680
Alignment:
Q  71 catattgggttaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaa 170  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| || ||| || |||| |||||||| ||||||||||||||||| ||    
T  110521 catattggggtaaaattgctgagtattgtaatgagcattgctcattcgatcctccgcgtgatgtaattgcttgccgaaaccgttttaattatatgagcaa 110620  T
Q  171 agtaataaataaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttg 230  Q
    |||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||    
T  110621 agtaataaataaatggattggtgcttatgaaagcgctaagcttttgcaaggaagcggttg 110680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 236
Target Start/End: Original strand, 166670 - 166804
Alignment:
Q  102 tgagtattgctcattcgattctccccgcgatctagttgcatgccgaaatcgttttaattatatgagtaaagtaataaataaatggattggtgcttatgaa 201  Q
    ||||||||| ||||| ||| |||| ||||||  ||||||||||||||| |||| |||||||||||    | ||||   |||||||||||| ||||||||     
T  166670 tgagtattgttcatttgatcctccgcgcgatggagttgcatgccgaaaccgttataattatatgaactgaataatgggtaaatggattggcgcttatgat 166769  T
Q  202 agcgccaagtgtttgcaaggaagcggttgatcgga 236  Q
    ||||| ||| ||||||||||||||||||| |||||    
T  166770 agcgctaagcgtttgcaaggaagcggttggtcgga 166804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 6549 - 6605
Alignment:
Q  181 aaatggattggtgcttatgaaagcgccaagtgtttgcaaggaagcggttgatcggaa 237  Q
    ||||||||||||||||||||| |||| |||  ||||||| ||| |||||||||||||    
T  6549 aaatggattggtgcttatgaaggcgctaagcttttgcaatgaaacggttgatcggaa 6605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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