View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0495_low_14 (Length: 299)

Name: NF0495_low_14
Description: NF0495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0495_low_14
NF0495_low_14
[»] chr5 (9 HSPs)
chr5 (58-233)||(4579654-4579829)
chr5 (58-207)||(31012330-31012491)
chr5 (90-233)||(32973703-32973846)
chr5 (95-233)||(27945201-27945339)
chr5 (95-233)||(40891371-40891509)
chr5 (90-233)||(30646210-30646353)
chr5 (95-233)||(29616875-29617013)
chr5 (161-233)||(34710648-34710720)
chr5 (58-98)||(21365270-21365310)
[»] chr3 (21 HSPs)
chr3 (58-233)||(51429519-51429694)
chr3 (58-233)||(50019643-50019818)
chr3 (58-233)||(17469061-17469248)
chr3 (58-233)||(25788009-25788196)
chr3 (58-233)||(47146918-47147105)
chr3 (58-231)||(25829966-25830151)
chr3 (90-233)||(33935822-33935965)
chr3 (58-233)||(42598664-42598851)
chr3 (95-233)||(6045686-6045824)
chr3 (95-233)||(30415814-30415952)
chr3 (95-233)||(42563557-42563695)
chr3 (95-233)||(10425010-10425148)
chr3 (90-233)||(26157448-26157591)
chr3 (90-233)||(43475038-43475181)
chr3 (95-233)||(33188422-33188560)
chr3 (98-233)||(4874459-4874594)
chr3 (90-231)||(30689174-30689315)
chr3 (100-233)||(4852727-4852860)
chr3 (90-224)||(21227770-21227904)
chr3 (183-233)||(33751209-33751259)
chr3 (123-224)||(21229898-21229999)
[»] chr6 (9 HSPs)
chr6 (58-233)||(17958599-17958786)
chr6 (58-231)||(634317-634502)
chr6 (58-231)||(6377731-6377916)
chr6 (95-233)||(34841056-34841194)
chr6 (90-233)||(8221751-8221894)
chr6 (90-233)||(24916962-24917105)
chr6 (90-233)||(18641834-18641977)
chr6 (94-207)||(29952376-29952489)
chr6 (90-221)||(24114707-24114838)
[»] chr4 (14 HSPs)
chr4 (58-233)||(2212584-2212771)
chr4 (58-233)||(46914778-46914965)
chr4 (58-233)||(53181732-53181919)
chr4 (95-233)||(3530613-3530751)
chr4 (95-233)||(3615602-3615740)
chr4 (95-233)||(8994333-8994471)
chr4 (95-233)||(13113111-13113249)
chr4 (90-233)||(16172200-16172343)
chr4 (58-215)||(36658099-36658268)
chr4 (99-233)||(33606632-33606766)
chr4 (90-233)||(28900568-28900711)
chr4 (125-233)||(34434917-34435025)
chr4 (90-233)||(28446824-28446967)
chr4 (151-233)||(36564834-36564916)
[»] chr2 (10 HSPs)
chr2 (58-233)||(9073221-9073408)
chr2 (58-233)||(30819918-30820105)
chr2 (58-231)||(12857526-12857711)
chr2 (58-233)||(8854644-8854831)
chr2 (95-233)||(7585887-7586025)
chr2 (90-233)||(5145717-5145860)
chr2 (58-172)||(2779394-2779507)
chr2 (90-231)||(31185588-31185729)
chr2 (98-233)||(31205311-31205446)
chr2 (90-233)||(4278714-4278857)
[»] chr1 (16 HSPs)
chr1 (58-233)||(31470833-31471020)
chr1 (58-233)||(45241685-45241872)
chr1 (90-233)||(17785890-17786033)
chr1 (95-233)||(2475477-2475615)
chr1 (95-233)||(48385533-48385671)
chr1 (90-233)||(47297897-47298040)
chr1 (90-233)||(17676659-17676802)
chr1 (90-233)||(38837036-38837179)
chr1 (90-220)||(18318101-18318231)
chr1 (90-233)||(33166834-33166977)
chr1 (90-212)||(8470899-8471020)
chr1 (95-233)||(51522887-51523025)
chr1 (95-233)||(48406975-48407101)
chr1 (161-233)||(10265804-10265876)
chr1 (58-98)||(17786037-17786077)
chr1 (151-207)||(45978665-45978721)
[»] chr8 (16 HSPs)
chr8 (59-233)||(35101042-35101228)
chr8 (90-233)||(13816684-13816827)
chr8 (58-233)||(5213430-5213617)
chr8 (95-233)||(1955637-1955775)
chr8 (95-233)||(15056194-15056332)
chr8 (90-214)||(26749243-26749367)
chr8 (90-233)||(38205569-38205712)
chr8 (90-233)||(17744217-17744360)
chr8 (90-233)||(30529975-30530118)
chr8 (162-233)||(1633962-1634033)
chr8 (58-98)||(5735809-5735849)
chr8 (58-98)||(13816831-13816871)
chr8 (169-223)||(27359720-27359774)
chr8 (169-223)||(27369077-27369131)
chr8 (62-98)||(27392273-27392309)
chr8 (71-99)||(1633726-1633754)
[»] chr7 (6 HSPs)
chr7 (58-231)||(22193863-22194048)
chr7 (95-233)||(36521076-36521214)
chr7 (90-233)||(22659494-22659637)
chr7 (90-233)||(32127592-32127735)
chr7 (90-233)||(26814712-26814855)
chr7 (90-152)||(40301251-40301313)
[»] scaffold1240 (1 HSPs)
scaffold1240 (58-233)||(17-204)
[»] scaffold0004 (2 HSPs)
scaffold0004 (90-233)||(105423-105566)
scaffold0004 (71-99)||(105569-105597)
[»] scaffold0021 (1 HSPs)
scaffold0021 (90-219)||(110552-110681)
[»] scaffold0007 (1 HSPs)
scaffold0007 (68-224)||(166648-166804)
[»] scaffold0658 (1 HSPs)
scaffold0658 (169-225)||(6549-6605)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 58 - 233
Target Start/End: Complemental strand, 4579829 - 4579654
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagca 157  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  4579829 cagagaggagaaacatattggggtaaaattgctgagtattgttcattcgattctccccgcgatctagttgtctgccgaaaccgttttaattatatgagca 4579730  T
Q  158 aaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4579729 aaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 4579654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 58 - 207
Target Start/End: Original strand, 31012330 - 31012491
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgag------------tattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    ||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  31012330 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 31012429  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31012430 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaa 31012491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 32973703 - 32973846
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||     
T  32973703 tgagcattgctcattcgattctccgcgcgatatagttgcatgccgaaaccgttttaattatatgaacaaattaataaataaatgggttggtgcttatgat 32973802  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32973803 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 32973846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 95 - 233
Target Start/End: Complemental strand, 27945339 - 27945201
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||    
T  27945339 attgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaaattaataaataaatgggttggtgcttatgatagcgc 27945240  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27945239 taagcgtatgcaaggaagcggttggtcggaagatgatgt 27945201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 95 - 233
Target Start/End: Complemental strand, 40891509 - 40891371
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||    
T  40891509 attgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaaattaataaataaatgggttggtgcttatgatagcgc 40891410  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40891409 taagcgtatgcaaggaagcggttggtcggaagatgatgt 40891371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 30646210 - 30646353
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| ||||||||||||||||||| | |||| ||||||||||||||||| ||||||||||||||||||||  ||||||||||||| |||||||||||||     
T  30646210 tgagcattgctcattcgattctccgctcgatgtagttgcatgccgaaactgttttaattatatgagcaaatgaataaataaatgggttggtgcttatgat 30646309  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
     ||||||||||| |||||||||||||||||||||||||||||||    
T  30646310 ggcgctaagcgtttgcaaggaagcggttggtcggaagatgatgt 30646353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 29616875 - 29617013
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    |||| ||||||||||||||   |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||    
T  29616875 attgatcattcgattctccgtgcgatgtagttgcatgccgaaaccgttttaattatatgaacaaattaataaataaatgggttggtgcttatgatagcgc 29616974  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  29616975 taagcgtatgcaaggaagcggtttgtcggaagatgatgt 29617013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 34710720 - 34710648
Alignment:
Q  161 taataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  34710720 taataaataaatggattggtgcttatgaaagtgctaagcgtttgcaaggaagcggttggtcggaagatgatgt 34710648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 21365310 - 21365270
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgagtattg 98  Q
    |||| ||| ||||||||||||||||||||||||||||||||    
T  21365310 cagataggtgaaacatattggggtaaaattgctgagtattg 21365270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 7e-83; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 58 - 233
Target Start/End: Complemental strand, 51429694 - 51429519
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagca 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||| ||    
T  51429694 cagagaggagaaacatattggggtaaaattgctgagtattgctcattcgattctccacgcgatctagttgcctgccgaaaccgttttaattatatgaaca 51429595  T
Q  158 aaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  51429594 aaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaaaatgatgt 51429519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 58 - 233
Target Start/End: Complemental strand, 50019818 - 50019643
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagca 157  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  50019818 cagagaggagaaacatattggggtaaaattgctaagtattgctcattcgattctccccgcgatctagttgcatgccgaaaccgttttaattatatgaaca 50019719  T
Q  158 aaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  50019718 aagtaataaataaatggattggtgcttatgaaagcgctaagcgtttgcaaggaagcggttggtctgaagatgatgt 50019643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 58 - 233
Target Start/End: Complemental strand, 17469248 - 17469061
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgagtattg------------ctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    |||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||| |||||||||||| ||||||||||||||||    
T  17469248 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 17469149  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17469148 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 17469061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 58 - 233
Target Start/End: Original strand, 25788009 - 25788196
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgag------------tattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    ||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  25788009 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 25788108  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25788109 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 25788196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 58 - 233
Target Start/End: Complemental strand, 47147105 - 47146918
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgagtattg------------ctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    |||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||| |||||||||||| ||||||||||||||||    
T  47147105 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtatagctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 47147006  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47147005 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 47146918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 25829966 - 25830151
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgag------------tattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    ||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  25829966 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 25830065  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgat 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25830066 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgat 25830151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 33935965 - 33935822
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33935965 tgagtattgctcattcgattctccccgcgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 33935866  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  33935865 agcgctaagcgtttgcaaggaagcggttggtcggaagatgatgt 33935822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 58 - 233
Target Start/End: Original strand, 42598664 - 42598851
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgag------------tattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    ||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||||||| ||| ||||||||||||    
T  42598664 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgctgaaaccgtttta 42598763  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42598764 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 42598851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 6045686 - 6045824
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||    
T  6045686 attgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaaattaataaataaatgggttggtgcttatgatagcgc 6045785  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6045786 taagcgtatgcaaggaagcggttggtcggaagatgatgt 6045824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 30415814 - 30415952
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||    
T  30415814 attgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaaattaataaataaatgggttggtgcttatgatagcgc 30415913  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30415914 taagcgtatgcaaggaagcggttggtcggaagatgatgt 30415952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 95 - 233
Target Start/End: Complemental strand, 42563695 - 42563557
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||    
T  42563695 attgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaaattaataaataaatgggttggtgcttatgatagcgc 42563596  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42563595 taagcgtatgcaaggaagcggttggtcggaagatgatgt 42563557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 10425010 - 10425148
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||    
T  10425010 attgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaaattaataaataaatgggttggtgcttatgatagcgc 10425109  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  10425110 taagcatatgcaaggaagcggttggtcggaagatgatgt 10425148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 26157448 - 26157591
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| |||||||||||||| |||| |  ||| || |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26157448 tgagcattgctcattcgatcctccgcgtgatataattgcttgccgaaaccgttttaattatatgagcaaagtaataaataaatggattggtgcttatgaa 26157547  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    || ||||||||| |||||||||||||||||||||||||||||||    
T  26157548 agtgctaagcgtctgcaaggaagcggttggtcggaagatgatgt 26157591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 43475181 - 43475038
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| ||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  43475181 tgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgagcaaattaataaataaatgggttggtgcttatgat 43475082  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
     || |||||||| ||||||||||||||||||||||| |||||||    
T  43475081 ggcactaagcgtttgcaaggaagcggttggtcggaaaatgatgt 43475038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 33188422 - 33188560
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    |||||| |||||||||||| | ||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||  ||||    
T  33188422 attgctaattcgattctccgcgcgatgcagttgcatgccgaaaccgttttaattatatgagcaaattaataaataaatgggttggtgcttatgatggcgc 33188521  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  33188522 taagcgtttgcaaggaagcggttggtcggaagatgatgt 33188560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 98 - 233
Target Start/End: Original strand, 4874459 - 4874594
Alignment:
Q  98 gctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaa 197  Q
    |||||||||||||||| | |||   ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||  | |||||    
T  4874459 gctcattcgattctccgcgcgactcagttgcatgccgaaaccgttttaattatatgagcaaattaataaataaatgggttggtgcttatgatggtgctaa 4874558  T
Q  198 gcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||| |||||||||||||||||||| ||||||||||    
T  4874559 gcgtttgcaaggaagcggttggtcgaaagatgatgt 4874594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 90 - 231
Target Start/End: Original strand, 30689174 - 30689315
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    ||||||| ||||||| |||||||| |  |||||||||||||||||||| | |||||||||||| |||||| ||||||||||||||||||||||||||||     
T  30689174 tgagtatggctcatttgattctccgcgggatctagttgcatgccgaaatcattttaattatataagcaaagtaataaataaatggattggtgcttatgat 30689273  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgat 231  Q
      |||||||||| |||||||||| ||||||||||||||||||    
T  30689274 gccgctaagcgtttgcaaggaagtggttggtcggaagatgat 30689315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 4852727 - 4852860
Alignment:
Q  100 tcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagc 199  Q
    |||||||||||||| | |||   || |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||  | |||||||    
T  4852727 tcattcgattctccgcgcgactcaggtgcatgccgaaaccgttttaattatatgagcaaattaataaataaatgggttggtgcttatgatggtgctaagc 4852826  T
Q  200 gtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    || |||||||||||||||||||| ||||||||||    
T  4852827 gtttgcaaggaagcggttggtcgaaagatgatgt 4852860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 90 - 224
Target Start/End: Complemental strand, 21227904 - 21227770
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| |||||||||| ||| |||| ||||||  ||||||||| |||||||||| ||||||||||| ||||||| ||  |||||||||||| ||||||||     
T  21227904 tgagaattgctcatttgatcctccgcacgatggagttgcatgtcgaaaccgttataattatatgaacaaaatactaggtaaatggattggcgcttatgat 21227805  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcgga 224  Q
    |||  ||| ||| | ||||||||||||||||||||    
T  21227804 agcattaatcgttttcaaggaagcggttggtcgga 21227770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 33751259 - 33751209
Alignment:
Q  183 ttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  33751259 ttatgaaagcgctaagcgtttgcaaggaagcggttggtcagaagatgatgt 33751209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 21229898 - 21229999
Alignment:
Q  123 agttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcg 222  Q
    ||||||||| |||||| ||| ||||||||||| ||||||| |   |||||||||||| |||||||| || |||| || | |||||| |||| ||||||||    
T  21229898 agttgcatgtcgaaactgttataattatatgaacaaaatactgggtaaatggattggcgcttatgatagtgctatgcatttgcaagcaagcagttggtcg 21229997  T
Q  223 ga 224  Q
    ||    
T  21229998 ga 21229999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 9e-73; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 58 - 233
Target Start/End: Original strand, 17958599 - 17958786
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgag------------tattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    ||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  17958599 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 17958698  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17958699 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 17958786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 58 - 231
Target Start/End: Complemental strand, 634502 - 634317
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgagtattg------------ctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    |||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||| |||||||||||| ||||||||||||||||    
T  634502 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 634403  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgat 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  634402 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgat 634317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 6377731 - 6377916
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgag------------tattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    ||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  6377731 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 6377830  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgat 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6377831 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgat 6377916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 95 - 233
Target Start/End: Complemental strand, 34841194 - 34841056
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||    
T  34841194 attgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaaattaataaataaatgggttggtgcttatgatagcgc 34841095  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34841094 taagcgtatgcaaggaagcggttggtcggaagatgatgt 34841056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 8221894 - 8221751
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| ||||||||||||||||||| | |||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  8221894 tgagaattgctcattcgattctccgcgcgatgtagttgcatgccgcaaccgttttaattatatgagcaaattaataaataaatgggttggtgcttatgat 8221795  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
     ||||||||| | | |||||||||||||||||||||||||||||    
T  8221794 ggcgctaagcattttcaaggaagcggttggtcggaagatgatgt 8221751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 24916962 - 24917105
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| |||||||||||||| |||| |  ||| || |||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24916962 tgagcattgctcattcgatcctccgcgtgatataattgcttgccgaaaccattttaattatatgagcaaagtaataaataaatggattggtgcttatgaa 24917061  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||| ||| |||||||||||||||||||||||||||||||    
T  24917062 agcgctaaacgtttgcaaggaagcggttggtcggaagatgatgt 24917105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 18641977 - 18641834
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| |||||||||||||| |||| |  ||| || |||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18641977 tgagcattgctcattcgatcctccgcgtgatgtaattgcttgccgaaaccattttaattatatgagcaaagtaataaataaatggattggtgcttatgaa 18641878  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    | |||||||||| ||||| |||||||||||| ||||||||||||    
T  18641877 atcgctaagcgtttgcaaagaagcggttggttggaagatgatgt 18641834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 94 - 207
Target Start/End: Original strand, 29952376 - 29952489
Alignment:
Q  94 tattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcg 193  Q
    |||||||||||  ||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |     
T  29952376 tattgctcatttaattatccccgcgatctagttgtatgccgaaaccgttttaattatatgagcaaagtaataaataaatggattggtgcttatgaaaaca 29952475  T
Q  194 ctaagcgtatgcaa 207  Q
     ||||||| |||||    
T  29952476 ttaagcgtttgcaa 29952489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 221
Target Start/End: Complemental strand, 24114838 - 24114707
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| ||| ||||||||||||| | | |||| || ||||||||| ||||||||||||||||||||||||||||   |||||||||||||| |||||||||    
T  24114838 tgagcattactcattcgattctgcgctcgatgtaattgcatgccaaaaccgttttaattatatgagcaaaataccgaataaatggattggcgcttatgaa 24114739  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtc 221  Q
     | ||||| ||| |||||||||| | ||||||    
T  24114738 ggtgctaaacgtttgcaaggaagtgcttggtc 24114707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 58 - 233
Target Start/End: Original strand, 2212584 - 2212771
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgag------------tattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    ||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  2212584 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 2212683  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2212684 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 2212771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 58 - 233
Target Start/End: Original strand, 46914778 - 46914965
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgag------------tattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    ||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  46914778 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaactgtttta 46914877  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46914878 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 46914965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 58 - 233
Target Start/End: Original strand, 53181732 - 53181919
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgag------------tattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    ||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  53181732 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 53181831  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  53181832 attatatgagcaaaataataaataaatggattggtgcttatgaaagtgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 53181919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 3530613 - 3530751
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||    
T  3530613 attgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaaattaataaataaatgggttggtgcttatgatagcgc 3530712  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3530713 taagcgtatgcaaggaagcggttggtcggaagatgatgt 3530751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 3615602 - 3615740
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||    
T  3615602 attgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaaattaataaataaatgggttggtgcttatgatagcgc 3615701  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3615702 taagcgtatgcaaggaagcggttggtcggaagatgatgt 3615740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 95 - 233
Target Start/End: Complemental strand, 8994471 - 8994333
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||    
T  8994471 attgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaaattaataaataaatgggttggtgcttatgatagcgc 8994372  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8994371 taagcgtatgcaaggaagcggttggtcggaagatgatgt 8994333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 95 - 233
Target Start/End: Complemental strand, 13113249 - 13113111
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||    
T  13113249 attgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaaattaataaataaatgggttggtgcttatgatagcgc 13113150  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13113149 taagcgtatgcaaggaagcggttggtcggaagatgatgt 13113111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 16172200 - 16172343
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| ||||||||||||||||||| | |||| ||||||||||||||||||| | |||| ||||||||||| |||||||||||||| |||||||||||||     
T  16172200 tgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccggtataataatatgagcaaattaataaataaatgggttggtgcttatgat 16172299  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
     |||||||||||||||||||||||||||||||||||||||||||    
T  16172300 ggcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 16172343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 58 - 215
Target Start/End: Complemental strand, 36658268 - 36658099
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgagtattg------------ctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    ||||||||| |||||||||||||||||||||||||||||||            |||||| ||||||||||  ||||||||||||||| ||||||||||||    
T  36658268 cagagaggaaaaacatattggggtaaaattgctgagtattgtaatgagtgttgctcatttgattctccccgggatctagttgcatgcagaaaccgtttta 36658169  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcgg 215  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  36658168 attatatgagcaaagtaataaataaatggattggtgcttatgaaagcgttaagcgtttgcaaggaagcgg 36658099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 99 - 233
Target Start/End: Complemental strand, 33606766 - 33606632
Alignment:
Q  99 ctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaag 198  Q
    |||||||||| |||| |  ||| || |||| |||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33606766 ctcattcgatcctccgcgtgatgtaattgcttgccgaaatcattttaattatatgagcaaagtaataaataaatggattggtgcttatgaaagcgctaag 33606667  T
Q  199 cgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||| |||||||||||||||||||||||||||||||    
T  33606666 cgtttgcaaggaagcggttggtcggaagatgatgt 33606632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 28900711 - 28900568
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| |||||||||||||||||||    ||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||   |||||||||||||     
T  28900711 tgagcattgctcattcgattctccgtgtgatgtagttgcatgccgaaaccattttaattatatgagcaaattaataaataaatttgttggtgcttatgat 28900612  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
     ||||||||||| |||||||||||||||||||||||||||||||    
T  28900611 ggcgctaagcgtttgcaaggaagcggttggtcggaagatgatgt 28900568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 125 - 233
Target Start/End: Original strand, 34434917 - 34435025
Alignment:
Q  125 ttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcgga 224  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||| | |||||||||||||||||| |||    
T  34434917 ttgcatgccgaaaccgttttaattatatgagcaaagtaataaataaatggattgatgtttatgaaagcgctaagcatttgcaaggaagcggttggttgga 34435016  T
Q  225 agatgatgt 233  Q
    |||||||||    
T  34435017 agatgatgt 34435025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 28446967 - 28446824
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| |||||||||||||| |||| |  | | || |||||||| ||||||||||||||||||||||||||||| |  ||||||||||||  |||||||||    
T  28446967 tgagcattgctcattcgatcctccacgtggtgtaattgcatgcagaaaccgttttaattatatgagcaaaatactgtataaatggattgacgcttatgaa 28446868  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
     |||||||| || |||||||||| ||||||||||| | ||||||    
T  28446867 ggcgctaagagtttgcaaggaagtggttggtcggaggctgatgt 28446824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 36564834 - 36564916
Alignment:
Q  151 atgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||| ||||||| | |||||||||||||| |||||||| |||||||| |||||||||  |||||| ||||||||  |||||||    
T  36564834 atgaacaaaatacttaataaatggattggcgcttatgatagcgctaaacgtatgcaacaaagcgggtggtcggagaatgatgt 36564916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 9e-73; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 58 - 233
Target Start/End: Original strand, 9073221 - 9073408
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgag------------tattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    ||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  9073221 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 9073320  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9073321 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 9073408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 58 - 233
Target Start/End: Original strand, 30819918 - 30820105
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgag------------tattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    ||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  30819918 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 30820017  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30820018 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 30820105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 58 - 231
Target Start/End: Complemental strand, 12857711 - 12857526
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgagtattg------------ctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    |||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||| |||||||||||| ||||||||||||||||    
T  12857711 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 12857612  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgat 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12857611 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgat 12857526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 58 - 233
Target Start/End: Complemental strand, 8854831 - 8854644
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgagtattg------------ctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    |||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||| |||||||||||| ||||||||||||||||    
T  8854831 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 8854732  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8854731 attatatgagtaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 8854644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 7585887 - 7586025
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||    
T  7585887 attgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaaattaataaataaatgggttggtgcttatgatagcgc 7585986  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7585987 taagcgtatgcaaggaagcggttggtcggaagatgatgt 7586025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 5145717 - 5145860
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| |||||||||| ||| |||| |  ||| || |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5145717 tgagcattgctcatttgatcctccgcgtgatgtaattgcttgccgaaaccgttttaattatatgagcaaagtaataaataaatggattggtgcttatgaa 5145816  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  5145817 agcgctaagcgtttgcaaggaagcggttggtcggaagatgatgt 5145860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 58 - 172
Target Start/End: Original strand, 2779394 - 2779507
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagca 157  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2779394 cagagagaagaaacatattggggtaaa-ttgctgagtattgctcattcgattctccccgcgatctagttgcatgccgaaaccgttttaattatatgagca 2779492  T
Q  158 aaataataaataaat 172  Q
    || ||||||||||||    
T  2779493 aagtaataaataaat 2779507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 90 - 231
Target Start/End: Original strand, 31185588 - 31185729
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    ||||||| ||||||| |||||||| |  |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||     
T  31185588 tgagtatggctcatttgattctccgcgggatctagttgcatgccaaaaccgttttaattatatgagcaaagtaataaataaatggattagtgcttatgat 31185687  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgat 231  Q
      |||||||||| |||||||||||||||||||||||||||||    
T  31185688 gccgctaagcgtttgcaaggaagcggttggtcggaagatgat 31185729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 98 - 233
Target Start/End: Original strand, 31205311 - 31205446
Alignment:
Q  98 gctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaa 197  Q
    ||||||| |||||||| |  ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||   ||||||    
T  31205311 gctcatttgattctccgcgggatctagttgcatgccgaaactgttttaattatatgagcaaagtaataaataaatggattagtgcttatgatgccgctaa 31205410  T
Q  198 gcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||| |||||||||||||||||||||||||||||||    
T  31205411 gcgtttgcaaggaagcggttggtcggaagatgatgt 31205446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 4278857 - 4278714
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| |||||||||||||| || | |  ||| || ||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||     
T  4278857 tgagcattgctcattcgatccttcgcgtgatgtaattgcatgccgaaaccgttttaattatatgagcaaagtactaaataaatggattggcgcttatgat 4278758  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
     ||||||||||| |||||  ||| ||||||||||| | ||||||    
T  4278757 ggcgctaagcgtttgcaaataagtggttggtcggaggctgatgt 4278714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 9e-73; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 58 - 233
Target Start/End: Complemental strand, 31471020 - 31470833
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgagtattg------------ctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    |||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||| |||||||||||| ||||||||||||||||    
T  31471020 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 31470921  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31470920 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 31470833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 58 - 233
Target Start/End: Complemental strand, 45241872 - 45241685
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgagtattg------------ctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    |||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||| |||||||||||| ||||||||||||||||    
T  45241872 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 45241773  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45241772 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 45241685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 17786033 - 17785890
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17786033 tgagtattgctcattcgattatccccgcgatctagttgcatgccgaaatcgttttaattatatgagcaaagtaataaataaatggattggtgcttatgaa 17785934  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||| |||||||| |||||||||||||||||||||||||||||||    
T  17785933 agcactaagcgtttgcaaggaagcggttggtcggaagatgatgt 17785890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 2475477 - 2475615
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||    
T  2475477 attgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaaattaataaataaatgggttggtgcttatgatagcgc 2475576  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2475577 taagcgtatgcaaggaagcggttggtcggaagatgatgt 2475615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 48385533 - 48385671
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||    
T  48385533 attgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaaattaataaataaatgggttggtgcttatgatagcgc 48385632  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||||||||||||||||||||||||||||    
T  48385633 taagcgtatgcaaggaagcggttggtcggaagatgatgt 48385671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 47297897 - 47298040
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| ||||||||||||||||||| | |||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||     
T  47297897 tgagcattgctcattcgattctccacgcgatgtagttgcatgccgaaactgttttaattatatgagcaaattaataaataaatggattggtgcttatgat 47297996  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
     ||||||||||| |||||||||||||||||||||||||||||||    
T  47297997 ggcgctaagcgtttgcaaggaagcggttggtcggaagatgatgt 47298040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 17676659 - 17676802
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| ||||||||||||||||||| | ||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  17676659 tgagcattgctcattcgattctccgcgcgatgcagttgcatgccgaaaccgttttaattatatgagcaaattaataaataaatgggttggtgcttatgat 17676758  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
     || |||||||| ||||||||||| |||||||||||||||||||    
T  17676759 ggcactaagcgtttgcaaggaagcagttggtcggaagatgatgt 17676802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 38837036 - 38837179
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| ||||||||||| ||||||| | ||||  || |||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  38837036 tgagcattgctcattcaattctccgcgcgatgcagctgcatgccaaaaccgttttaattatatgagcaaattaataaataaatgggttggtgcttatgat 38837135  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
     ||||||||||| ||||||||||||||| ||| |||||||||||    
T  38837136 ggcgctaagcgtttgcaaggaagcggttcgtcagaagatgatgt 38837179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 90 - 220
Target Start/End: Original strand, 18318101 - 18318231
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| ||||||||||||||||||| | |||| || |||||||||||||| ||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  18318101 tgagcattgctcattcgattctccgcgcgatgtaattgcatgccgaaactgttttaattatatgagcaaaatactaaataaatggattgacgcttatgaa 18318200  T
Q  190 agcgctaagcgtatgcaaggaagcggttggt 220  Q
     ||||||||||| |||||||||| |||||||    
T  18318201 ggcgctaagcgtttgcaaggaagtggttggt 18318231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 33166977 - 33166834
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    ||||||||||||||||||| |||  |  ||| || |||| |||||||||||||||| ||||||| ||||| |||||||||| ||||||| ||||||||||    
T  33166977 tgagtattgctcattcgatcctctgcgtgatgtaattgcttgccgaaaccgttttagttatatgtgcaaagtaataaataattggattgatgcttatgaa 33166878  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    | |||||||||| |||||||||||||||||| ||||||||||||    
T  33166877 atcgctaagcgtttgcaaggaagcggttggtaggaagatgatgt 33166834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 90 - 212
Target Start/End: Complemental strand, 8471020 - 8470899
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||||||||||||||||||||||| | |||  |||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||| ||     
T  8471020 tgagtattgctcattcgattctccgcgcgaagtagttgcatgccgaaaccgttttaattatatgagcaaattaataaataaatgggtt-gtgcttaagat 8470922  T
Q  190 agcgctaagcgtatgcaaggaag 212  Q
     ||||||||||| ||||||||||    
T  8470921 ggcgctaagcgtttgcaaggaag 8470899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 233
Target Start/End: Complemental strand, 51523025 - 51522887
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    |||||| ||||||| |||| |  ||| || ||||||||||||||||||||| |||||||||||||||| |||||||||||||||| | ||||||| ||||    
T  51523025 attgcttattcgatcctccgcgtgatgtaattgcatgccgaaaccgttttatttatatgagcaaaatactaaataaatggattggcgtttatgaaggcgc 51522926  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||| |||||||||| ||||||||||| | ||||||    
T  51522925 taagcgtttgcaaggaagtggttggtcggaggctgatgt 51522887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 95 - 233
Target Start/End: Complemental strand, 48407101 - 48406975
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    ||||||||||||||||||| | | || ||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||            ||    
T  48407101 attgctcattcgattctccgcgcaatgtagttgcatgccgaaaccgttttaattatatgaacaaattaataaataaatgggttggt------------gc 48407014  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  48407013 taagcgtatgcaaagaagcggttggtcggaagatgatgt 48406975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 10265804 - 10265876
Alignment:
Q  161 taataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||| |||||||||||||  ||||||||||| ||||||||||||||||||| |||||||||||    
T  10265804 taataaataaatgggttggtgcttatgatggcgctaagcgtttgcaaggaagcggttggtcagaagatgatgt 10265876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 17786077 - 17786037
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgagtattg 98  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  17786077 cagagaggagaaacaaattggggtaaaattgctgagtattg 17786037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 45978721 - 45978665
Alignment:
Q  151 atgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaa 207  Q
    |||| ||||||| | |||||||||||||  ||||||||  |||||||||||||||||    
T  45978721 atgaacaaaatacttaataaatggattgacgcttatgacggcgctaagcgtatgcaa 45978665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 59 - 233
Target Start/End: Complemental strand, 35101228 - 35101042
Alignment:
Q  59 agagaggagaaacatattggggtaaaattgctgagtattg------------ctcattcgattctccccacgatctagttgcatgccgaaaccgttttaa 146  Q
    ||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||| |||||||||||| |||||||||||||||||    
T  35101228 agagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgttttaa 35101129  T
Q  147 ttatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35101128 ttatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 35101042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 13816827 - 13816684
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13816827 tgagtattgctcattcgattctccccgcgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 13816728  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  13816727 agcgctaagcgaatgcaaggaagcggttggtcggaagatgatgt 13816684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 58 - 233
Target Start/End: Complemental strand, 5213617 - 5213430
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgagtattg------------ctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    |||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||| |||||||||||| ||||||||||||||||    
T  5213617 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 5213518  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  5213517 attatacgagcaaaataataaataaatggattggggcttatgaaagcgctaagcgtatgcaagtaagcggttggtcggaaaatgatgt 5213430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 1955637 - 1955775
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||    
T  1955637 attgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaaattaataaataaatgggttggtgcttatgatagcgc 1955736  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1955737 taagcgtatgcaaggaagcggttggtcggaagatgatgt 1955775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 95 - 233
Target Start/End: Complemental strand, 15056332 - 15056194
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||    
T  15056332 attgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaaattaataaataaatgggttggtgcttatgatagcgc 15056233  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15056232 taagcgtatgcaaggaagcggttggtcggaagatgatgt 15056194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 90 - 214
Target Start/End: Original strand, 26749243 - 26749367
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26749243 tgagtattgctcattcgattctccccgcgatctagttgcatgccgaaaccgttttaattatatgagcaaagtaataaataaatggattggtgcttatgaa 26749342  T
Q  190 agcgctaagcgtatgcaaggaagcg 214  Q
    |||||||| ||| ||||||||||||    
T  26749343 agcgctaaacgtttgcaaggaagcg 26749367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 38205569 - 38205712
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| |||||||||||||| |||| |  ||| || |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38205569 tgagcattgctcattcgatcctccgcgtgatgtaattgcttgccgaaaccgttttaattatatgagcaaagtaataaataaatggattggtgcttatgaa 38205668  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |  ||||||||| |||||||||||||||| ||||||||||||||    
T  38205669 aaagctaagcgtttgcaaggaagcggttgatcggaagatgatgt 38205712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 17744360 - 17744217
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    ||||||| ||||||| |||||||| |  ||||||||||||||||  ||| |||||||||||||||||||| |||||||||||||| |||||||||||||     
T  17744360 tgagtatggctcatttgattctccactggatctagttgcatgccagaactgttttaattatatgagcaaagtaataaataaatgggttggtgcttatgat 17744261  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
      |||||||||| |||||| ||| ||||||||||||||||||||    
T  17744260 gtcgctaagcgtttgcaagaaagtggttggtcggaagatgatgt 17744217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 30529975 - 30530118
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| |||||||||||||| |||| |  ||| || |||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  30529975 tgagcattgctcattcgatcctccgcgtgatgtaattgcttgccgaaaccgttttaattatatgagcaaagtaataaatgaatggattggtgcttatgaa 30530074  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    | ||| |||||| ||||||||| ||||  |||||||||||||||    
T  30530075 aacgccaagcgtttgcaaggaaacggtaagtcggaagatgatgt 30530118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 1633962 - 1634033
Alignment:
Q  162 aataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  1633962 aataaataaatggattggtgcttatgaaagcgctaagtgtttgcaaggaagcggttggtcggaagatgatgt 1634033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 5735849 - 5735809
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgagtattg 98  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  5735849 cagaggggagaaacatattggggtaaaattgctgagtattg 5735809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 13816871 - 13816831
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgagtattg 98  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  13816871 cagagaggagaaacatatttgggtaaaattgctgagtattg 13816831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 27359774 - 27359720
Alignment:
Q  169 aaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcgg 223  Q
    |||||||||||||||||| || ||||||||||| | |||||||||| ||||||||    
T  27359774 aaatggattggtgcttataaaggcgctaagcgtttacaaggaagcgattggtcgg 27359720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 27369131 - 27369077
Alignment:
Q  169 aaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcgg 223  Q
    |||||||||||||||||| || ||||||||||| | |||||||||| ||||||||    
T  27369131 aaatggattggtgcttataaaggcgctaagcgtttacaaggaagcgattggtcgg 27369077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 27392309 - 27392273
Alignment:
Q  62 gaggagaaacatattggggtaaaattgctgagtattg 98  Q
    |||| ||||||||||||||||||||||||||||||||    
T  27392309 gaggtgaaacatattggggtaaaattgctgagtattg 27392273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 99
Target Start/End: Original strand, 1633726 - 1633754
Alignment:
Q  71 catattggggtaaaattgctgagtattgc 99  Q
    |||||||||||||||||||||||||||||    
T  1633726 catattggggtaaaattgctgagtattgc 1633754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 58 - 231
Target Start/End: Complemental strand, 22194048 - 22193863
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgagtattg------------ctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    |||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||| |||||||||||| ||||||||||||||||    
T  22194048 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctccccgcgatctagttgcctgccgaaaccgtttta 22193949  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgat 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22193948 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgat 22193863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 95 - 233
Target Start/End: Complemental strand, 36521214 - 36521076
Alignment:
Q  95 attgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaaagcgc 194  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||    
T  36521214 attgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgaacaaattaataaataaatgggttggtgcttatgatagcgc 36521115  T
Q  195 taagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36521114 taagcgtatgcaaggaagcggttggtcggaagatgatgt 36521076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 22659637 - 22659494
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| ||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||     
T  22659637 tgagcattgctcattcgattctccgcgcgatgtagttgcatgccgaaaccgttttaattatatgagcaaattaataaataaatgggttggtgcttatgat 22659538  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
     ||| |||||||||||||||||||||||||||||||||||||||    
T  22659537 ggcgttaagcgtatgcaaggaagcggttggtcggaagatgatgt 22659494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 32127592 - 32127735
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| |||||||||||||| |||| |  ||| || |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32127592 tgagcattgctcattcgatcctccgcgtgatataattgcttgccgaaaccgttttaattatatgagcaaagtaataaataaatggattggtgcttatgaa 32127691  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    || | ||||||| |||||||||||||||||||||||||||||||    
T  32127692 agtgttaagcgtttgcaaggaagcggttggtcggaagatgatgt 32127735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 26814855 - 26814712
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| |||||||||||||  |||| |  ||| || |||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  26814855 tgagcattgctcattcgaccctccgcgtgatataattgcttgccgaaaccgttttaattatatgagcaaagtaataaataaatggattgatgcttatgaa 26814756  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    || ||||||||| ||||||||| |||||||||||||||||||||    
T  26814755 agtgctaagcgtttgcaaggaaacggttggtcggaagatgatgt 26814712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 152
Target Start/End: Original strand, 40301251 - 40301313
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatat 152  Q
    |||| |||||||||||||||||||   |||| |||||||||||||||||| ||||||||||||    
T  40301251 tgagcattgctcattcgattctccgtgcgatgtagttgcatgccgaaaccattttaattatat 40301313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1240 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold1240
Description:

Target: scaffold1240; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 58 - 233
Target Start/End: Original strand, 17 - 204
Alignment:
Q  58 cagagaggagaaacatattggggtaaaattgctgag------------tattgctcattcgattctccccacgatctagttgcatgccgaaaccgtttta 145  Q
    ||||||||||||||||||||||||||||||||||||            ||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  17 cagagaggagaaacatattggggtaaaattgctgagtattgtaatgagtattgctcattcgattctctccgcgatctagttgcatgccgaaaccgtttta 116  T
Q  146 attatatgagcaaaataataaataaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  117 attatatgagcaaagtaataaataaatggattggtgcttatgaaagcactaagcgtttgcaaggaagcggttggtcggaagatgatgt 204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 105566 - 105423
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| |||||||||||||| |||| |  ||| || |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  105566 tgagcattgctcattcgatcctccgcgtgatataattgcttgccgaaaccgttttaattatatgagcaaagtaataaataaatggattggtgcttatgaa 105467  T
Q  190 agcgctaagcgtatgcaaggaagcggttggtcggaagatgatgt 233  Q
    || ||||||||| |||||||||||||||||||||||||||||||    
T  105466 agtgctaagcgtttgcaaggaagcggttggtcggaagatgatgt 105423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 99
Target Start/End: Complemental strand, 105597 - 105569
Alignment:
Q  71 catattggggtaaaattgctgagtattgc 99  Q
    |||||||||||||||||||||||||||||    
T  105597 catattggggtaaaattgctgagtattgc 105569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 110552 - 110681
Alignment:
Q  90 tgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaataaatggattggtgcttatgaa 189  Q
    |||| |||||||||||||| |||| |  ||| || |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  110552 tgagcattgctcattcgatcctccgcgtgatgtaattgcttgccgaaaccgttttaattatatgagcaaagtaataaataaatggattggtgcttatgaa 110651  T
Q  190 agcgctaagcgtatgcaaggaagcggttgg 219  Q
    |||||||||| | |||||||||||||||||    
T  110652 agcgctaagcttttgcaaggaagcggttgg 110681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 68 - 224
Target Start/End: Original strand, 166648 - 166804
Alignment:
Q  68 aaacatattggggtaaaattgctgagtattgctcattcgattctccccacgatctagttgcatgccgaaaccgttttaattatatgagcaaaataataaa 167  Q
    ||||||||| ||||| ||||| ||||||||| ||||| ||| |||| | ||||  |||||||||||||||||||| ||||||||||| |  ||||||       
T  166648 aaacatatttgggtagaattgttgagtattgttcatttgatcctccgcgcgatggagttgcatgccgaaaccgttataattatatgaactgaataatggg 166747  T
Q  168 taaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcgga 224  Q
    |||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||    
T  166748 taaatggattggcgcttatgatagcgctaagcgtttgcaaggaagcggttggtcgga 166804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 6549 - 6605
Alignment:
Q  169 aaatggattggtgcttatgaaagcgctaagcgtatgcaaggaagcggttggtcggaa 225  Q
    ||||||||||||||||||||| ||||||||| | ||||| ||| |||||| ||||||    
T  6549 aaatggattggtgcttatgaaggcgctaagcttttgcaatgaaacggttgatcggaa 6605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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