View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0495_low_23 (Length: 268)
Name: NF0495_low_23
Description: NF0495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0495_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 32 - 258
Target Start/End: Original strand, 3668227 - 3668457
Alignment:
| Q |
32 |
aacaagcataaacttttcacctcatttttagtttcacaccata-tgcaaaagaatcaagcagaacatagccagttccacacaaccccacaaaaacaaatc |
130 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3668227 |
aacaagcataaacttttcacctcatctttagtttcacaccaaaatgcaaaagaatcaagcagaacatagccagttccacacaaccccacaaaaacaaatc |
3668326 |
T |
|
| Q |
131 |
aattccaatttccacaattacccttgttcacc---attnnnnnnnnnnnnnnnnnnttcagcaaaattcaaaacctgacaaacagaaccaccttcttcct |
227 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3668327 |
aattccaatttccacaattacccttgttcaccataatcatcatcatcatcatcatcttcagcaaaattcaaaacctgacaaacagaaccaccttcttcct |
3668426 |
T |
|
| Q |
228 |
ccaccgtcactctctcctcctcatcttcatc |
258 |
Q |
| |
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||||| ||||||||||||||||||||||||| |
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| T |
3668427 |
ccaccatcactctctcctcctcatcttcatc |
3668457 |
T |
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