View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0495_low_29 (Length: 219)

Name: NF0495_low_29
Description: NF0495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0495_low_29
NF0495_low_29
[»] chr8 (3 HSPs)
chr8 (100-155)||(12930985-12931040)
chr8 (99-155)||(12935731-12935787)
chr8 (108-153)||(26504850-26504895)
[»] chr7 (5 HSPs)
chr7 (98-153)||(37040424-37040479)
chr7 (100-155)||(12099306-12099361)
chr7 (100-153)||(15290541-15290594)
chr7 (100-151)||(12084700-12084751)
chr7 (123-155)||(2757236-2757268)
[»] chr4 (7 HSPs)
chr4 (100-155)||(11104774-11104829)
chr4 (100-155)||(14174247-14174302)
chr4 (100-155)||(14179001-14179056)
chr4 (100-155)||(28606806-28606861)
chr4 (100-155)||(28611568-28611623)
chr4 (100-155)||(44161894-44161949)
chr4 (100-156)||(48826702-48826758)
[»] chr1 (1 HSPs)
chr1 (100-155)||(34907448-34907503)
[»] chr2 (1 HSPs)
chr2 (100-155)||(8539493-8539548)
[»] chr6 (1 HSPs)
chr6 (100-147)||(2100199-2100246)
[»] chr5 (3 HSPs)
chr5 (100-155)||(42910993-42911048)
chr5 (100-153)||(29106878-29106931)
chr5 (100-152)||(38994699-38994751)
[»] chr3 (1 HSPs)
chr3 (100-153)||(51302966-51303019)


Alignment Details
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 12931040 - 12930985
Alignment:
Q  100 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12931040 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 12930985  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 12935787 - 12935731
Alignment:
Q  99 ctgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12935787 ctgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaattcaaaaga 12935731  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 26504850 - 26504895
Alignment:
Q  108 tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 153  Q
    |||||||| |||| | ||||||||||||||||| ||||||||||||    
T  26504850 tcgacgagtttaatggaagtgtaaattaaaatttcaaaatccaaaa 26504895  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 37040424 - 37040479
Alignment:
Q  98 tctgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37040424 tctgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 37040479  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 12099361 - 12099306
Alignment:
Q  100 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 155  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  12099361 tgttgggctcgacgagtttaacgcgagtgtaaattaaaattccaaaatccaaaaga 12099306  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 15290594 - 15290541
Alignment:
Q  100 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 153  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  15290594 tgttgggctcgacgagcttaacgcaattgtaaattaaaatttcaaaatccaaaa 15290541  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 12084751 - 12084700
Alignment:
Q  100 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaa 151  Q
    |||||||||| ||||||||||| | || ||||||||||||| ||||||||||    
T  12084751 tgttgggctcaacgagcttaacacgagggtaaattaaaatttcaaaatccaa 12084700  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 2757236 - 2757268
Alignment:
Q  123 caagtgtaaattaaaattccaaaatccaaaaga 155  Q
    ||||||||||||||||||||||||| |||||||    
T  2757236 caagtgtaaattaaaattccaaaattcaaaaga 2757268  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 11104829 - 11104774
Alignment:
Q  100 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11104829 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 11104774  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 14174302 - 14174247
Alignment:
Q  100 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174302 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 14174247  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 14179056 - 14179001
Alignment:
Q  100 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14179056 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 14179001  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 28606806 - 28606861
Alignment:
Q  100 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28606806 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 28606861  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 28611568 - 28611623
Alignment:
Q  100 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611568 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 28611623  T

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Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 44161949 - 44161894
Alignment:
Q  100 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44161949 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 44161894  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 48826702 - 48826758
Alignment:
Q  100 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagat 156  Q
    ||||||| |||||||||||||||||| |||||||||||||| |||||| ||| ||||    
T  48826702 tgttgggatcgacgagcttaacgcaattgtaaattaaaatttcaaaattcaagagat 48826758  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 34907503 - 34907448
Alignment:
Q  100 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34907503 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 34907448  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 8539548 - 8539493
Alignment:
Q  100 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  8539548 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaattctaaaaga 8539493  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 2100199 - 2100246
Alignment:
Q  100 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaat 147  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  2100199 tgttgggctcgacgagcttaacacaagtgtaaattaaaattccaaaat 2100246  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 42910993 - 42911048
Alignment:
Q  100 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 155  Q
    ||||||||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  42910993 tgttgggctcgacgagcttaacgcaagtggaaattaaaattttaaaatccaaaaga 42911048  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 29106878 - 29106931
Alignment:
Q  100 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 153  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  29106878 tgttgggatcgaggagcttaatgcaagtgtaaattaaaattccaaaatccaaaa 29106931  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 38994699 - 38994751
Alignment:
Q  100 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaa 152  Q
    ||||||||| ||||| ||||| || |||||||||||||||||||||| |||||    
T  38994699 tgttgggcttgacgatcttaatgctagtgtaaattaaaattccaaaacccaaa 38994751  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 51303019 - 51302966
Alignment:
Q  100 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 153  Q
    ||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||    
T  51303019 tgttgggatcgacgagcttaatgcaagtgtaaattaaaatttcaaaatccaaaa 51302966  T

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