View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0495_low_30 (Length: 214)
Name: NF0495_low_30
Description: NF0495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0495_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 89; Significance: 4e-43; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 382240 - 382140
Alignment:
| Q |
8 |
ccaagaatatacacaccagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccataagt |
107 |
Q |
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| T |
382240 |
ccaaaaatatacacaccagagatttgtattgatttaattcagtttagtatcgaatcaagatatgtctcacatgcatcttaagatattgataaccatgagt |
382141 |
T |
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| Q |
108 |
t |
108 |
Q |
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| T |
382140 |
t |
382140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 30863989 - 30864065
Alignment:
| Q |
16 |
atacacaccagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagata |
92 |
Q |
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| T |
30863989 |
atacacactagagatttgtatcgattgagttcattttagtattgaatcgagatacgactcacatgtatcgtaagata |
30864065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 6300454 - 6300370
Alignment:
| Q |
16 |
atacacaccagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataac |
100 |
Q |
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| T |
6300454 |
atacacaccagagattcatatcgattgagttcagtatagtatcgaataaagatacgactcgcatgcattatatgatattgataac |
6300370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 6307264 - 6307180
Alignment:
| Q |
16 |
atacacaccagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataac |
100 |
Q |
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| T |
6307264 |
atacacaccagagattcatatcgattgagttcagtatagtatcgaataaagatacgactcgcatgcattatatgatattgataac |
6307180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 30035413 - 30035336
Alignment:
| Q |
26 |
gagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccat |
103 |
Q |
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||||||||||| |||| |||||| || ||||| |||| ||||| | |||||||| ||| ||||||| |||||||||| |
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| T |
30035413 |
gagatttgtatcgattgaattcaattaagtattgaattgagatacgactcacatgtatcataagatactgataaccat |
30035336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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