View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0495_low_4 (Length: 397)
Name: NF0495_low_4
Description: NF0495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0495_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 119 - 386
Target Start/End: Complemental strand, 1788596 - 1788329
Alignment:
| Q |
119 |
taaacaatttccaaactaagattacaaaacttgagcttaataacaatcatttcatggaccaattggaatactaagatcttctagagtttctttagtaaaa |
218 |
Q |
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| T |
1788596 |
taaacaatttccaaactaagattacaaaacttgagcttaataacaatcatttcatggaccaattggaatactaagatcttctagagtttctttagtaaaa |
1788497 |
T |
|
| Q |
219 |
ttcttccttccctttgaaatcaataaggcctcttctagtgttttgacaacttgttccatggatggtctttgttggtcaagggatgtgcatgatagagcca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1788496 |
ttcttccttccctttgaaatcaataaggcctcttctagtgttttgacaacttgttccatggatggtctttgttggtcaagggatgtgcatgatagagcca |
1788397 |
T |
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| Q |
319 |
attgaagtgtaaaatcaaatgcttcttcagaataatttccttcaagtctaggatcagcaaattctgtg |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1788396 |
attgaagtgtaaaatcaaatgcttcttcagaataatttccttcaagtctaggatcagcaaattctgtg |
1788329 |
T |
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