View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0497-Insertion-11 (Length: 201)
Name: NF0497-Insertion-11
Description: NF0497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0497-Insertion-11 |
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| [»] scaffold0041 (4 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 95616 - 95527
Alignment:
| Q |
8 |
ctcatgattagccatatatctcatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca |
97 |
Q |
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| T |
95616 |
ctcatgattagccatatatcttatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca |
95527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 87600 - 87511
Alignment:
| Q |
8 |
ctcatgattagccatatatctcatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca |
97 |
Q |
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| T |
87600 |
ctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcaca |
87511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 87474 - 87405
Alignment:
| Q |
98 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgccatagctgagggtccacactc |
167 |
Q |
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| T |
87474 |
ctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactc |
87405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 95490 - 95440
Alignment:
| Q |
98 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
148 |
Q |
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| T |
95490 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
95440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 40870666 - 40870755
Alignment:
| Q |
8 |
ctcatgattagccatatatctcatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca |
97 |
Q |
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| T |
40870666 |
ctcatgattagccatatatcttatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca |
40870755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 40878683 - 40878772
Alignment:
| Q |
8 |
ctcatgattagccatatatctcatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca |
97 |
Q |
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| T |
40878683 |
ctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcaca |
40878772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 40878809 - 40878878
Alignment:
| Q |
98 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgccatagctgagggtccacactc |
167 |
Q |
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| T |
40878809 |
ctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactc |
40878878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 40870792 - 40870842
Alignment:
| Q |
98 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
148 |
Q |
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| T |
40870792 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
40870842 |
T |
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