View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0497-Insertion-13 (Length: 196)

Name: NF0497-Insertion-13
Description: NF0497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0497-Insertion-13
NF0497-Insertion-13
[»] chr4 (3 HSPs)
chr4 (55-192)||(46872179-46872316)
chr4 (145-187)||(46889596-46889638)
chr4 (140-178)||(46863182-46863220)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 2e-72; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 55 - 192
Target Start/End: Original strand, 46872179 - 46872316
Alignment:
Q  55 tatttacctagatttatcatttgtcttgctttattgggaagctgctgcctgctggagttttgttttgacatagtggtgggtggtccccaactaaaaaacc 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46872179 tatttacctagatttatcatttgtcttgctttattgggaagctgctgcctgctggagttttgttttgacatagtggtgggtggtccccaactaaaaaacc 46872278  T
Q  155 ttaaaccttgtcacttcctcactatatatatgccatca 192  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46872279 ttaaaccttgtcacttcctcactatatatatgccatca 46872316  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 46889596 - 46889638
Alignment:
Q  145 ctaaaaaaccttaaaccttgtcacttcctcactatatatatgc 187  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  46889596 ctaaaaaaccttaaaccttgccacttcctcactatatatatgc 46889638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 46863182 - 46863220
Alignment:
Q  140 cccaactaaaaaaccttaaaccttgtcacttcctcacta 178  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  46863182 cccaactaaaaaaccttaaacctcgtcactgcctcacta 46863220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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