View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0497-Insertion-2 (Length: 655)

Name: NF0497-Insertion-2
Description: NF0497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0497-Insertion-2
NF0497-Insertion-2
[»] chr6 (9 HSPs)
chr6 (330-652)||(3253896-3254218)
chr6 (8-258)||(3254290-3254540)
chr6 (166-258)||(3117827-3117919)
chr6 (159-258)||(10542164-10542262)
chr6 (159-239)||(15944351-15944431)
chr6 (166-239)||(15132496-15132569)
chr6 (166-225)||(14663421-14663478)
chr6 (202-256)||(33697789-33697843)
chr6 (163-195)||(16598934-16598966)
[»] chr3 (23 HSPs)
chr3 (159-258)||(2392152-2392251)
chr3 (159-258)||(2393915-2394014)
chr3 (166-239)||(21343699-21343772)
chr3 (166-239)||(47236050-47236123)
chr3 (159-258)||(31483213-31483312)
chr3 (159-258)||(45164186-45164285)
chr3 (181-258)||(30352110-30352187)
chr3 (159-239)||(19176858-19176938)
chr3 (159-239)||(34475407-34475487)
chr3 (167-258)||(9583710-9583801)
chr3 (166-257)||(40023225-40023316)
chr3 (166-239)||(50305230-50305303)
chr3 (161-237)||(37158660-37158735)
chr3 (166-238)||(53248253-53248325)
chr3 (159-239)||(4463734-4463814)
chr3 (166-258)||(17551290-17551382)
chr3 (166-237)||(23328004-23328075)
chr3 (171-258)||(43012710-43012796)
chr3 (166-257)||(45399119-45399210)
chr3 (166-223)||(50560012-50560069)
chr3 (166-239)||(25506726-25506799)
chr3 (159-222)||(47439284-47439347)
chr3 (159-239)||(5556931-5557011)
[»] chr1 (14 HSPs)
chr1 (159-258)||(30685573-30685672)
chr1 (159-258)||(6804871-6804969)
chr1 (166-239)||(41920809-41920882)
chr1 (159-258)||(31584689-31584787)
chr1 (166-257)||(46814121-46814212)
chr1 (166-256)||(24449587-24449676)
chr1 (159-239)||(5389077-5389152)
chr1 (166-239)||(40216162-40216235)
chr1 (159-237)||(7002541-7002619)
chr1 (159-256)||(14320658-14320755)
chr1 (166-237)||(27031497-27031568)
chr1 (186-258)||(5459493-5459565)
chr1 (159-239)||(24684142-24684221)
chr1 (166-197)||(24659313-24659344)
[»] chr7 (23 HSPs)
chr7 (159-258)||(31971784-31971883)
chr7 (159-258)||(47325534-47325633)
chr7 (159-258)||(5859932-5860031)
chr7 (159-258)||(10244513-10244612)
chr7 (159-258)||(44353213-44353312)
chr7 (166-258)||(42454390-42454482)
chr7 (159-258)||(33434480-33434579)
chr7 (166-257)||(34391516-34391607)
chr7 (166-223)||(3419055-3419112)
chr7 (166-235)||(43482261-43482329)
chr7 (166-257)||(6585220-6585311)
chr7 (161-228)||(37795359-37795426)
chr7 (161-228)||(37795687-37795754)
chr7 (159-221)||(40726140-40726202)
chr7 (166-228)||(35745488-35745550)
chr7 (161-237)||(11378772-11378847)
chr7 (160-239)||(3867467-3867545)
chr7 (159-258)||(25161141-25161240)
chr7 (173-223)||(3419321-3419371)
chr7 (195-258)||(38306593-38306656)
chr7 (166-239)||(48161697-48161769)
chr7 (160-258)||(41089396-41089491)
chr7 (166-224)||(31756326-31756384)
[»] chr8 (21 HSPs)
chr8 (159-258)||(20138759-20138858)
chr8 (159-239)||(12897925-12898005)
chr8 (159-239)||(22773973-22774053)
chr8 (166-258)||(37986511-37986603)
chr8 (166-258)||(16457131-16457223)
chr8 (166-258)||(24995051-24995143)
chr8 (159-239)||(32065934-32066014)
chr8 (159-258)||(31207011-31207110)
chr8 (166-258)||(9519839-9519931)
chr8 (159-219)||(9659474-9659534)
chr8 (166-239)||(15821033-15821105)
chr8 (166-239)||(35815900-35815973)
chr8 (159-239)||(36631175-36631254)
chr8 (166-239)||(13538337-13538410)
chr8 (166-239)||(13686064-13686137)
chr8 (166-257)||(3584071-3584163)
chr8 (160-256)||(35821590-35821685)
chr8 (190-258)||(27889179-27889247)
chr8 (190-258)||(27947837-27947905)
chr8 (159-199)||(34866309-34866349)
chr8 (166-239)||(38577442-38577515)
[»] chr4 (20 HSPs)
chr4 (159-258)||(35329340-35329439)
chr4 (159-258)||(7703020-7703118)
chr4 (159-258)||(27555579-27555679)
chr4 (166-239)||(9750119-9750191)
chr4 (166-258)||(30964770-30964862)
chr4 (166-237)||(2826135-2826206)
chr4 (159-258)||(4306038-4306136)
chr4 (159-258)||(8705789-8705888)
chr4 (166-225)||(30167219-30167278)
chr4 (166-256)||(46698435-46698525)
chr4 (166-239)||(35341007-35341082)
chr4 (160-239)||(11281375-11281454)
chr4 (166-257)||(31050317-31050408)
chr4 (166-227)||(36689461-36689522)
chr4 (543-611)||(27757131-27757199)
chr4 (166-239)||(49528438-49528511)
chr4 (175-258)||(20464922-20465005)
chr4 (159-239)||(8255379-8255459)
chr4 (159-239)||(8268797-8268877)
chr4 (166-257)||(52868767-52868859)
[»] chr2 (21 HSPs)
chr2 (166-239)||(14436923-14436996)
chr2 (159-239)||(3745693-3745773)
chr2 (166-239)||(5254605-5254677)
chr2 (168-256)||(387511-387599)
chr2 (159-239)||(13512488-13512568)
chr2 (160-236)||(15457817-15457893)
chr2 (159-227)||(25280964-25281032)
chr2 (166-257)||(7461010-7461100)
chr2 (159-258)||(10524431-10524529)
chr2 (159-258)||(39338510-39338609)
chr2 (166-239)||(7455604-7455676)
chr2 (175-239)||(17116553-17116617)
chr2 (159-239)||(43816096-43816176)
chr2 (166-239)||(43248883-43248956)
chr2 (166-258)||(14405532-14405623)
chr2 (166-258)||(41877208-41877300)
chr2 (166-257)||(14106179-14106269)
chr2 (159-225)||(9823695-9823761)
chr2 (167-229)||(45311461-45311523)
chr2 (166-257)||(7874610-7874702)
chr2 (169-239)||(22888552-22888621)
[»] scaffold0172 (1 HSPs)
scaffold0172 (160-239)||(19270-19349)
[»] chr5 (9 HSPs)
chr5 (159-258)||(18593575-18593674)
chr5 (165-239)||(5656748-5656822)
chr5 (159-239)||(7161663-7161743)
chr5 (159-258)||(7452921-7453020)
chr5 (159-239)||(18313303-18313383)
chr5 (166-239)||(698719-698792)
chr5 (166-239)||(34378451-34378524)
chr5 (159-239)||(29087830-29087903)
chr5 (159-239)||(18255099-18255179)
[»] scaffold0343 (1 HSPs)
scaffold0343 (166-239)||(6057-6130)
[»] scaffold0085 (1 HSPs)
scaffold0085 (166-258)||(48668-48760)
[»] scaffold0434 (1 HSPs)
scaffold0434 (182-258)||(2345-2421)
[»] scaffold0068 (1 HSPs)
scaffold0068 (159-212)||(35473-35526)


Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 330 - 652
Target Start/End: Complemental strand, 3254218 - 3253896
Alignment:
Q  330 gtaaacacggtagtaatatgaatcaaatgcaatgtgctgtttcaaattcactagctttcaaatttagaattcatacaacttgaatctgattatgtatttt 429  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3254218 gtaaacacggtagtaatatgaatcaattgcaatgtgctgtttcaaattcactagctttcaaatttagaattcatacaacttgaatctgattatgtatttt 3254119  T
Q  430 gtggaacagacaaaatgactattttatcctttagtcaaatttatgnnnnnnnnnnnnnn-atgaaagaaaacttgttcatttcattaaagagagaagaat 528  Q
    |||||||||||||||||||||||| |||||||||||||||| |||               ||||||||||||||||||||||||||||||||||||||||    
T  3254118 gtggaacagacaaaatgactattt-atcctttagtcaaattaatgtttttttttttttttatgaaagaaaacttgttcatttcattaaagagagaagaat 3254020  T
Q  529 aaatacatgtagctttagcaagatgatgagcaaccacattagcttctctcttagagaactcagcatgagttataaacactagactcaactatgtgacgac 628  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  3254019 aaatacatgtagctttagcaagatgatgagcaaccacattagcttctctcttagagaattcagcatgagttataaacactagactcaaatatgtgacgac 3253920  T
Q  629 actccctaataacaagaccatact 652  Q
    ||| ||||||||||||||||||||    
T  3253919 acttcctaataacaagaccatact 3253896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 3254540 - 3254290
Alignment:
Q  8 agttctttcagatttttatgtgattcattctttgggtttatcatttagttgtggttttgctttttcccttctatttttaaacataattgcttctgttcaa 107  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3254540 agttctttcagatttttatgtgattcattctttgtgtttatcatttagttgtggttttgctttttcccttctatttttaaacataattgcttctgttcaa 3254441  T
Q  108 cttctctgaatctgtttctagtgttggagttttagagatgagnnnnnnnnnaatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatgga 207  Q
    |||||||||| |||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3254440 cttctctgaaactgtttctagtgttggagttttagagatgagtttttttttaatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatgga 3254341  T
Q  208 cgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    ||||| |||||||||||||||| | ||||||| | ||||||||||||||||    
T  3254340 cgaaacaagatacaaatggtgccgtatatagatagtacaccatagccacct 3254290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 3117919 - 3117827
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||| ||||||    
T  3117919 aaatattattaaacgtcattcctgcaagacgtaaggtatggacgaaataagatacaaatggtgcagcatatagacgctacaccataaccacct 3117827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 10542262 - 10542164
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    ||||||||||||||||||| || ||| ||||||||| ||||| |||| |||||| |||||||||| ||||| |||||||||  |||||||||| ||||||    
T  10542262 aatcggaaaatattattaagcgccat-cccgcaagatgcaagatatgaacgaaacaagatacaaaaggtgccgcatatagacgatacaccataaccacct 10542164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 15944431 - 15944351
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||| ||||||||||||||| |||||| | ||||||||||||||||||  || |||||||||||||||  |||||||||    
T  15944431 aatcggcaaatattattaaacgccatccctgtaagacgcaaggtatggacagaagaagatacaaatggtgtcgcatataga 15944351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 15132496 - 15132569
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    ||||||||||||||| ||||  ||||||||| ||||||||||| ||| |||||||||||| ||| | |||||||    
T  15132496 aaatattattaaacgccatcatcgcaagacgtaaggtatggacaaaacaagatacaaatgatgccgtatataga 15132569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 14663478 - 14663421
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatg 225  Q
    ||||||||||||||||||| || |||||||| |||||||||||| || ||||||||||||    
T  14663478 aaatattattaaacgtcat-cctgcaagacgaaaggtatggacg-aacaagatacaaatg 14663421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 33697789 - 33697843
Alignment:
Q  202 tatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccac 256  Q
    ||||||||||| |||||||||||||||| |||||||||   ||||||||| ||||    
T  33697789 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 33697843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 16598934 - 16598966
Alignment:
Q  163 ggaaaatattattaaacgtcatccccgcaagac 195  Q
    |||| ||||||||||||||||||||||||||||    
T  16598934 ggaagatattattaaacgtcatccccgcaagac 16598966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 8e-35; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 2392152 - 2392251
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||   ||||||||| ||||||    
T  2392152 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 2392251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 2393915 - 2394014
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||   ||||||||| ||||||    
T  2393915 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 2394014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 21343772 - 21343699
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| |||||||||    
T  21343772 aaatattattaaacgtcatcccggcaagacacaaggtatggacgaaacaagatacaaatggtgccgcatataga 21343699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 47236123 - 47236050
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  47236123 aaatattattaaacgccatccctgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatataga 47236050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 31483312 - 31483213
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| ||||||||||||||  ||||||| |||||||||||||||| || ||| ||||||||||||||||||||||||||   ||||||||| ||||||    
T  31483312 aatcggcaaatattattaaacaccatccccacaagacgcaaggtatgaacaaaacaagatacaaatggtgctgcatatagacggtacaccataaccacct 31483213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 45164285 - 45164186
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| |||||||||||||| | |||||||||||| ||||||||||||| ||| |||||||||||||||| |||||||||   ||||||||| ||||||    
T  45164285 aatcggcaaatattattaaacattatccccgcaagatgcaaggtatggactaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 45164186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 30352110 - 30352187
Alignment:
Q  181 tcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||  ||||||||| ||||||    
T  30352110 tcattcccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagaaggtacaccataaccacct 30352187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 19176938 - 19176858
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||| ||||||||||||||||||| || ||||||||||| |||||||||||| | |||||||||||||| |||||||||    
T  19176938 aatcggcaaatattattaaacgtcattcctgcaagacgcaaagtatggacgaaacatgatacaaatggtgccgcatataga 19176858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 34475407 - 34475487
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||| | ||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||  ||||||||    
T  34475407 aatcggcacatattattaaacgtcatccccgcaagacgcagggtatgaacgaaacaagatacaaatggtgccccatataga 34475487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 167 - 258
Target Start/End: Original strand, 9583710 - 9583801
Alignment:
Q  167 aatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||||||||||| |||| ||| ||||| |||||||| ||||||| |||||||||||||||| |||||||||  |||||||||| ||||||    
T  9583710 aatattattaaacgccatctccgtaagacacaaggtatagacgaaacaagatacaaatggtgccgcatatagacgatacaccataaccacct 9583801  T

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Target: chr3; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 40023225 - 40023316
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacc 257  Q
    |||||||||||||| ||||||||||||||||||  |||||||||||| |||||||||||| ||| |||||||||   ||||||||| |||||    
T  40023225 aaatattattaaacatcatccccgcaagacgcattgtatggacgaaacaagatacaaatgatgccgcatatagacggtacaccataaccacc 40023316  T

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Target: chr3; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 50305230 - 50305303
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    ||||||||||||||| ||| |||||||||||||||||||||||| || |||||||||||||||  |||||||||    
T  50305230 aaatattattaaacgccattcccgcaagacgcaaggtatggacggaacaagatacaaatggtgtcgcatataga 50305303  T

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Target: chr3; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 37158735 - 37158660
Alignment:
Q  161 tcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatata 237  Q
    |||| ||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||| |||||||    
T  37158735 tcggcaaatattat-aaacgccatccccgcaagacgcaaggtatggacgaaacaggatacaaatggtgccgcatata 37158660  T

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Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 53248325 - 53248253
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatag 238  Q
    |||||||||||||||||||||||||||| || ||||||||||| ||| |||||||||||||||  ||||||||    
T  53248325 aaatattattaaacgtcatccccgcaaggcgtaaggtatggacaaaacaagatacaaatggtgtcgcatatag 53248253  T

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Target: chr3; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 4463734 - 4463814
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||| |||||||||||||||||| |||| |||||||||||  |||||||||| || | ||||||||||| |||||||||    
T  4463734 aatcggcaaatattattaaacgtcaaccccacaagacgcaagacatggacgaaacaacacacaaatggtgccgcatataga 4463814  T

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Target: chr3; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 17551382 - 17551290
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||||||||||||| ||||| |||||| ||| |||||| |||||| || ||||||||||||| |||||||||   ||||||||| ||||||    
T  17551382 aaatattattaaacgttatccctgcaagatgcagggtatgaacgaaacaaaatacaaatggtgccgcatatagactgtacaccataaccacct 17551290  T

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Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 23328004 - 23328075
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatata 237  Q
    |||||||||||||||  ||||| |||| ||||||||||||||||||| |||||| ||||||||| |||||||    
T  23328004 aaatattattaaacgctatccctgcaatacgcaaggtatggacgaaacaagatataaatggtgccgcatata 23328075  T

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Target: chr3; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 43012796 - 43012710
Alignment:
Q  171 ttattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||||| |||||||  ||||||||||||||||| |||||| || ||||||||||||| |||||||||  |||||||||| ||||||    
T  43012796 ttattaaatgtcatcct-gcaagacgcaaggtatgaacgaaacaatatacaaatggtgccgcatatagacgatacaccataaccacct 43012710  T

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Target: chr3; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 45399210 - 45399119
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacc 257  Q
    ||||||||||||||| |||| ||| ||||||| ||||||| |||||| |||||||||| ||||| |||||||||   ||||||||| |||||    
T  45399210 aaatattattaaacgacatctccgaaagacgcgaggtatgaacgaaacaagatacaaacggtgccgcatatagacggtacaccataaccacc 45399119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 50560069 - 50560012
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaa 223  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||||    
T  50560069 aaatattattaaacgtcatcctcgcaatacgcaagatatggacgaaacaagatacaaa 50560012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 25506726 - 25506799
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||||||||||| ||||||||||||||| |||| |||  || ||| || ||||||||||||| |||||||||    
T  25506726 aaatattattaaacatcatccccgcaagacccaagatataaacaaaacaatatacaaatggtgccgcatataga 25506799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 47439347 - 47439284
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaa 222  Q
    |||||| |||||||| |||||||||||||  ||||||  ||||||||||||||| |||||||||    
T  47439347 aatcggcaaatattactaaacgtcatccctacaagacataaggtatggacgaaacaagatacaa 47439284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 5557011 - 5556931
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||| |||||||||||||||||||  ||| | || | ||||| || |||||| ||||||||||| ||  ||||||||||    
T  5557011 aatcggcaaatattattaaacgtcatttccgtaggatgtaaggtttgaacgaaacaagatacaaatagttatgcatataga 5556931  T

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Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 30685573 - 30685672
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||   ||||||||| ||||||    
T  30685573 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacct 30685672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 6804969 - 6804871
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| |||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||   ||||||||| ||||||    
T  6804969 aatcggtaaatattattaaacgctatccccgcaagacgcaaggtatggacgaaa-aagatacaaatggtgccgcatatagacggtacaccataaccacct 6804871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 41920882 - 41920809
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||||||||||||||    
T  41920882 aaatattattaaacgtcatctccgcaagacgtaaggtatggacgaaataaaatacaaattgtgctgcatataga 41920809  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 31584689 - 31584787
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| ||||||||||||||  ||||| |||||||||||||||||| |||||| |||||||||||||||| |||||||||  |||||||||| ||||||    
T  31584689 aatcggcaaatattattaaacaccatcctcgcaagacgcaaggtatg-acgaaacaagatacaaatggtgccgcatatagacgatacaccataaccacct 31584787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 46814121 - 46814212
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacc 257  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||| |||||||||||||||| |||||||||   ||||||||| |||||    
T  46814121 aaatattattaaacgccatcctcgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 46814212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 24449587 - 24449676
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccac 256  Q
    ||||||||||||||| |||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||   ||||||||| ||||    
T  24449587 aaatattattaaacgccatccc-gcaagatgcaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccac 24449676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 5389077 - 5389152
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||||||||||||||||||| |||||||     |||||||||||||||||||||||||||||||||||| |||||||||    
T  5389077 aatcggaaaatattattaaacgccatcccc-----acgcaaggtatggacgaaataagatacaaatggtgccgcatataga 5389152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 40216162 - 40216235
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    ||||||||||||||||||||| |||||||||| || ||||||||||  |||||||||||||||| |||||||||    
T  40216162 aaatattattaaacgtcatcctcgcaagacgccagatatggacgaatcaagatacaaatggtgccgcatataga 40216235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 7002619 - 7002541
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatata 237  Q
    |||||| ||||||||||||||||||||| ||||| | | ||||||||||||||| |||||||||| ||||| |||||||    
T  7002619 aatcggcaaatattattaaacgtcatcctcgcaaaatgtaaggtatggacgaaacaagatacaaaaggtgccgcatata 7002541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 159 - 256
Target Start/End: Complemental strand, 14320755 - 14320658
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccac 256  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||  | ||||||||||||  |||||||||   ||||||||| ||||    
T  14320755 aatcggcaaatattattaaacgtcatccccacaagatgcaaggtatggacaaaaccaaatacaaatggtgtcgcatatagacggtacaccataaccac 14320658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 27031497 - 27031568
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatata 237  Q
    ||||||||||||||||||||| ||||||||||||| |||||||| || || ||| ||||||||| |||||||    
T  27031497 aaatattattaaacgtcatcctcgcaagacgcaagatatggacggaacaatatataaatggtgccgcatata 27031568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 5459565 - 5459493
Alignment:
Q  186 cccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    ||||||| ||||||||||||||||||  || ||||||||||||| |||||||||   ||||||||| ||||||    
T  5459565 cccgcaatacgcaaggtatggacgaagcaacatacaaatggtgccgcatatagacggtacaccataaccacct 5459493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 24684142 - 24684221
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||| ||||||||||| | |||||||| |||||| |||||||||| || ||| ||||||||||||||||  ||||||||    
T  24684142 aatcggcaaatattattatatgtcatccctgcaagatgcaaggtatgaac-aaacaagatacaaatggtgccacatataga 24684221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 197
Target Start/End: Complemental strand, 24659344 - 24659313
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgc 197  Q
    ||||||||||||||||||||||||||||||||    
T  24659344 aaatattattaaacgtcatccccgcaagacgc 24659313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 5e-30; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 31971784 - 31971883
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||   ||||||||| ||||||    
T  31971784 aatcggcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 31971883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 47325534 - 47325633
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| ||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||| ||||||    
T  47325534 aatcggcaaatattattaaacgtcatcctcgtaagacgcaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacct 47325633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 5859932 - 5860031
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| ||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||| |||||||||   ||||||||| ||||||    
T  5859932 aatcggcaaatattattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 5860031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 10244612 - 10244513
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| ||||||||||||||  |||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| | ||||||||| ||||||    
T  10244612 aatcggcaaatattattaaactccatctccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacaccataaccacct 10244513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 44353213 - 44353312
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| ||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||   ||||||||| ||||||    
T  44353213 aatcggtaaatattattaaacgccatccccgcaagacgcaaagtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacct 44353312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 166 - 258
Target Start/End: Original strand, 42454390 - 42454482
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||||||||||| |||||||||||||||||||| ||| ||||||| ||| |||||||||||| ||||||||| | ||||||||| ||||||    
T  42454390 aaatattattaaacatcatccccgcaagacgcaagatatagacgaaacaaggtacaaatggtgccgcatatagacagtacaccataaccacct 42454482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 33434480 - 33434579
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| ||||||||||||||| ||||||||||| ||||||||||||||||||  |||||||||||||| ||| |||||||   ||||||||| ||||||    
T  33434480 aatcggcaaatattattaaacgccatccccgcaatacgcaaggtatggacgaagcaagatacaaatggttctgtatatagacggtacaccataaccacct 33434579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 34391607 - 34391516
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacc 257  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||  ||| |||||||||  |||||||||| |||||    
T  34391607 aaatattattaaacgtcatccccgcaggacgcagggtatggacgaaacaagatacaaataatgccgcatatagacgatacaccataaccacc 34391516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 3419055 - 3419112
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3419055 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaa 3419112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 43482329 - 43482261
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcata 235  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||    
T  43482329 aaatattattaaacgtcatccccgta-gacgcaaggtatggacgaaataagatacaaatagtgctgcata 43482261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 6585311 - 6585220
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacc 257  Q
    ||||||||||||||| ||||||||||||| |||||| |||||||||| ||||||||||||||||  ||||||||   ||||||||| |||||    
T  6585311 aaatattattaaacgccatccccgcaagatgcaaggaatggacgaaacaagatacaaatggtgccacatatagacggtacaccataaccacc 6585220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 37795426 - 37795359
Alignment:
Q  161 tcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtg 228  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||    
T  37795426 tcggcaaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtg 37795359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 37795754 - 37795687
Alignment:
Q  161 tcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtg 228  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||    
T  37795754 tcggcaaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtg 37795687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 40726140 - 40726202
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagataca 221  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  40726140 aatcggcaaatattattaaatgtcatccccgcaagacgcaaggtatggacgaaacaagataca 40726202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 35745488 - 35745550
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtg 228  Q
    |||||||||||||||||||| ||| || ||||||||||||||||||| |||||||||||||||    
T  35745488 aaatattattaaacgtcatctccgtaaaacgcaaggtatggacgaaacaagatacaaatggtg 35745550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 11378772 - 11378847
Alignment:
Q  161 tcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatata 237  Q
    |||| ||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| ||| ||| |||||||    
T  11378772 tcggcaaatattattaaacgccaaccccgcaagacgcaaggtatggacg-aataagatacagatgatgccgcatata 11378847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 3867545 - 3867467
Alignment:
Q  160 atcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    ||||| |||||||||||||| ||||||| |||||||| ||||||| ||||||| ||||||||||||||||  ||||||||    
T  3867545 atcggcaaatattattaaacttcatccc-gcaagacgtaaggtattgacgaaacaagatacaaatggtgccacatataga 3867467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 25161240 - 25161141
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| |||||||||||||||||||||||| ||||   |||||||| |||||| ||||| |||||||||| | |||||||   ||||||||| ||||||    
T  25161240 aatcggcaaatattattaaacgtcatccccgtaagatttaaggtatgaacgaaacaagatgcaaatggtgccgtatatagacggtacaccataaccacct 25161141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 3419321 - 3419371
Alignment:
Q  173 attaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaa 223  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  3419321 attaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaa 3419371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 38306656 - 38306593
Alignment:
Q  195 cgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||||||||||||||| |||||||||||||||| |||||||||   ||||||||| ||||||    
T  38306656 cgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 38306593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 48161697 - 48161769
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||||||||||||||||||| ||||||| |||| |||||||| || || |||||||| |||| |||||||||    
T  48161697 aaatattattaaacgtcatccctgcaagacacaagatatggacg-aacaaaatacaaatagtgccgcatataga 48161769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 160 - 258
Target Start/End: Original strand, 41089396 - 41089491
Alignment:
Q  160 atcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    ||||| ||||||||||||| | |||| | |||||||  ||||||||||||||| ||||||| |||||||| |||||||||   ||||||||| ||||||    
T  41089396 atcggcaaatattattaaatgccatctctgcaagac--aaggtatggacgaaacaagatac-aatggtgccgcatatagacggtacaccataaccacct 41089491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 31756326 - 31756384
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaat 224  Q
    ||||||||||||||||||||||| |||| |||| |  |||||||||| || ||||||||    
T  31756326 aaatattattaaacgtcatccccacaagtcgcaggaaatggacgaaacaatatacaaat 31756384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 20138858 - 20138759
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| ||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||   ||||||||| ||||||    
T  20138858 aatcggtaaatattattaaacgccatccccgcaagacgcaaagtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacct 20138759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 12897925 - 12898005
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| |||||||||    
T  12897925 aatcggcaaatattattaaacgtcatccccgcaagatgcaagatatggacgaaacaagatacaaatggtgccgcatataga 12898005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 22774053 - 22773973
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||    
T  22774053 aatcggcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaactagatacaaatggtgccgcatataga 22773973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 166 - 258
Target Start/End: Original strand, 37986511 - 37986603
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    ||||||||||||| |||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||   ||||||||| ||||||    
T  37986511 aaatattattaaatgtcatccccgcaagacgcaaggcacggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacct 37986603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 166 - 258
Target Start/End: Original strand, 16457131 - 16457223
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||  ||||||||   ||||||||| ||||||    
T  16457131 aaatattattaaacgtcatccctgcaagacgtaaggtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataaccacct 16457223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 166 - 258
Target Start/End: Original strand, 24995051 - 24995143
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||||||| |||| |||||||| |||||||||||||||||||||| |||||||||||||||| || |||||| | ||||||||| ||||||    
T  24995051 aaatattattgaacgccatccccgtaagacgcaaggtatggacgaaacaagatacaaatggtgccgcttatagacagtacaccataaccacct 24995143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 32065934 - 32066014
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||| ||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||||||||||| |||||||||    
T  32065934 aatcggcaaatattattaaacgccatcaccgcaagatgcaaggtatggacgaaacaagatacaaatggtgccgcatataga 32066014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 31207011 - 31207110
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| | ||||| |   ||||||||| ||||||    
T  31207011 aatcggcaaatattattaaacgccatcctcgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgtatataaacggtacaccataaccacct 31207110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 9519931 - 9519839
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    ||||||||||||||  ||||||  ||||||||||||||||||||||| |||||||||||||||| ||||||||| | |||| |||| ||||||    
T  9519931 aaatattattaaacaccatccctacaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacatcataaccacct 9519839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 9659534 - 9659474
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagata 219  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9659534 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagata 9659474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 15821033 - 15821105
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||||||||||||||||||  ||||||||||||||||||||| || |||||||||||||||| |||||||||    
T  15821033 aaatattattaaacgtcatcct-gcaagacgcaaggtatggacggaacaagatacaaatggtgccgcatataga 15821105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 35815900 - 35815973
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||||  ||||||||    
T  35815900 aaatattattaaacgccatcctcgcaaaacgcaaggtatggacgaaacaagatacaaatggtgccacatataga 35815973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 36631254 - 36631175
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||||||||||||||| ||| |||||| |||||||||||||||| || |||| |||||||||||||||| |||||||||    
T  36631254 aatcggaaaatattattatacgccatccctgcaagacgcaaggtat-gaagaaacaagatacaaatggtgccgcatataga 36631175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 13538410 - 13538337
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    ||||||||||||||| |||| || ||||||||||||||||||||||| || ||||||||||| | |||||||||    
T  13538410 aaatattattaaacgccatctccacaagacgcaaggtatggacgaaagaatatacaaatggtaccgcatataga 13538337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 13686064 - 13686137
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    ||||||||||||||| |||| || ||||||||||||||||||||||| || ||||||||||| | |||||||||    
T  13686064 aaatattattaaacgccatctccacaagacgcaaggtatggacgaaagaatatacaaatggtaccgcatataga 13686137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 3584163 - 3584071
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaa-taagatacaaatggtgctgcatatagaaaatacaccatagccacc 257  Q
    ||||||||||||||| ||||||| |||||||| ||||||| ||||||  |||||||||||||||| |||||||||   ||||||||| |||||    
T  3584163 aaatattattaaacgccatccccacaagacgcgaggtatgaacgaaacaaagatacaaatggtgccgcatatagacggtacaccataaccacc 3584071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 160 - 256
Target Start/End: Complemental strand, 35821685 - 35821590
Alignment:
Q  160 atcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccac 256  Q
    ||||| ||||||||||||||| |||| ||||||||||||||| |||||||||| | |||||||||| ||| |||||||||   ||||||||| ||||    
T  35821685 atcggcaaatattattaaacgccatctccgcaagacgcaagg-atggacgaaacatgatacaaatgatgccgcatatagacggtacaccataaccac 35821590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 27889247 - 27889179
Alignment:
Q  190 caagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    ||||||||||||||| ||||||| |||||||||||||||| |||||||||   ||||||||| ||||||    
T  27889247 caagacgcaaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacct 27889179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 27947905 - 27947837
Alignment:
Q  190 caagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    ||||||||||||||| ||||||| |||||||||||||||| |||||||||   ||||||||| ||||||    
T  27947905 caagacgcaaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacct 27947837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 34866309 - 34866349
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaa 199  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  34866309 aatcggcaaatattattaaacgtcatccccgcaagacgcaa 34866349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 38577442 - 38577515
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||||||||||||||||  |||||||| | || ||||| |||||| || ||||||||| ||| |||||||||    
T  38577442 aaatattattaaacgtcatttccgcaagatgtaatgtatgaacgaaacaatatacaaatgatgccgcatataga 38577515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 35329439 - 35329340
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| |||||||| |||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||   ||||||||| ||||||    
T  35329439 aatcggcaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacct 35329340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 7703118 - 7703020
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||| |||||||||   ||||||||| ||||||    
T  7703118 aatcggcaaatattattaaacgtcatccccgcaagacacaaggtatggatgaaa-aagatacaaatggtgccgcatatagacggtacaccataaccacct 7703020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 27555579 - 27555679
Alignment:
Q  159 aatcggaaaatattattaaacgtcatcccc-gcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacc 257  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| |||| |||||||||   ||||||||| |||||    
T  27555579 aatcggcaaatattattaaacgccatcccccgcaagacgcaaggtatggacgaaacaagatacaaattgtgccgcatatagatggtacaccataaccacc 27555678  T
Q  258 t 258  Q
    |    
T  27555679 t 27555679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 9750191 - 9750119
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| |||||||||    
T  9750191 aaatattattaaacgtcatccccgcaagacgc-aggtttggacgaaacaagatacaaatggtgccgcatataga 9750119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 30964862 - 30964770
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||| |||||||||||| || ||||||||||   ||||||||| ||||||    
T  30964862 aaatattattaaacaccatccctgcaagacgcaaggtatggacgaaacaagatacaaatgatgttgcatatagacggtacaccataaccacct 30964770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 2826206 - 2826135
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatata 237  Q
    |||||||||||||||||||| | ||||||||||||||||||||| || |||||||||||||||| |||||||    
T  2826206 aaatattattaaacgtcatctctgcaagacgcaaggtatggacggaacaagatacaaatggtgccgcatata 2826135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 4306136 - 4306038
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| ||||||||||||| |||||||||| ||||||||||||||| |||||| |||||| ||||||||| |||||||||   ||||||||| ||||||    
T  4306136 aatcggcaaatattattaaatgtcatccccggaagacgcaaggtatgaacgaaa-aagatataaatggtgccgcatatagacggtacaccataaccacct 4306038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 8705789 - 8705888
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| ||||||||||||||||||||||  |||||||| ||||||||||||   | ||||||||||||||||||||||||   ||||||||| ||||||    
T  8705789 aatcggcaaatattattaaacgtcatcccttcaagacgcgaggtatggacgaggcaggatacaaatggtgctgcatatagacggtacaccataaccacct 8705888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 30167219 - 30167278
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatg 225  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  30167219 aaatattattaaacgtcatcctcgcaagacgcaaggtatggacgaaacaagatacaaatg 30167278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 46698435 - 46698525
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccac 256  Q
    |||||||||||||||||||||  | |||||||||||||||| ||||| |||||||||||||||| |||||||||   ||||||||| ||||    
T  46698435 aaatattattaaacgtcatccatgaaagacgcaaggtatggtcgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 46698525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 35341007 - 35341082
Alignment:
Q  166 aaatattattaaacgtcatcccc--gcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||||||||||  ||||||||    
T  35341007 aaatattattaaacgtcatccccccgcaagacgcaatgtatggacgaaacaagatacaaatggtgccacatataga 35341082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 11281375 - 11281454
Alignment:
Q  160 atcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    ||||| |||||||||| ||||||||| || ||||||||||| ||||||||||| | |||| ||||||||||| |||||||    
T  11281375 atcggcaaatattattgaacgtcatctccacaagacgcaagatatggacgaaacatgatataaatggtgctgtatataga 11281454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 31050317 - 31050408
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacc 257  Q
    ||||||||||||||||| ||||||||||| || | |||||||||||| |||||||||||| ||  |||||||||   ||||||||| |||||    
T  31050317 aaatattattaaacgtcgtccccgcaagatgcgatgtatggacgaaacaagatacaaatgatgtcgcatatagacggtacaccataaccacc 31050408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 36689461 - 36689522
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggt 227  Q
    |||||||||||||   |||| ||||||||||| |||||||||||||||||||||||||||||    
T  36689461 aaatattattaaataccatctccgcaagacgcgaggtatggacgaaataagatacaaatggt 36689522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 543 - 611
Target Start/End: Complemental strand, 27757199 - 27757131
Alignment:
Q  543 ttagcaagatgatgagcaaccacattagcttctctcttagagaactcagcatgagttataaacactaga 611  Q
    |||||||||||| || ||||||  ||||| |||||||||||||||||| |||||||| |||||||||||    
T  27757199 ttagcaagatgaagaacaaccatgttagcgtctctcttagagaactcaacatgagttgtaaacactaga 27757131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 49528511 - 49528438
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||| |||||||  || |||||||| ||  ||||||||||||||| |||||||||||||||| |||||||||    
T  49528511 aaatatcattaaacaccaaccccgcaaaacataaggtatggacgaaacaagatacaaatggtgccgcatataga 49528438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 20465005 - 20464922
Alignment:
Q  175 taaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||||||||| | ||||| |||||||||| | |||| |||||||||||||||| | |||||||   ||||||||| ||||||    
T  20465005 taaacgtcatcctcacaagatgcaaggtatgaaagaaacaagatacaaatggtgccgtatatagacggtacaccataaccacct 20464922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 8255459 - 8255379
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||| |||||||||||||||  ||| ||||||||   ||||| ||||||| | |||||||||||| ||| |||||||||    
T  8255459 aatcggcaaatattattaaacgctatctccgcaagatataaggtgtggacgagacaagatacaaatgatgccgcatataga 8255379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 8268877 - 8268797
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||| |||||||||||||||  ||| ||||||||   ||||| ||||||| | |||||||||||| ||| |||||||||    
T  8268877 aatcggcaaatattattaaacgctatctccgcaagatataaggtgtggacgagacaagatacaaatgatgccgcatataga 8268797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 52868767 - 52868859
Alignment:
Q  166 aaatattattaaa-cgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacc 257  Q
    ||||||||||||| |||||||  | ||||||| |||||||| ||||| ||||||||||||||||  || ||||||   ||||||||| |||||    
T  52868767 aaatattattaaaacgtcatcttcacaagacgtaaggtatgaacgaattaagatacaaatggtgtcgcgtatagacggtacaccataaccacc 52868859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 14436923 - 14436996
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  14436923 aaatattattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatataga 14436996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 3745773 - 3745693
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||| ||||||||||||| |||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3745773 aatcggcaaatattattaaatgtcatccccataagacgcaaggtatggacgaaacaagatacaaatggtgctgcatataga 3745693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 5254677 - 5254605
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||||    
T  5254677 aaatattattaaacgtcatcctcgcaagacgtaaggtatggacgaaat-agatacaaatggtgccgcatataga 5254605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 387599 - 387511
Alignment:
Q  168 atattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccac 256  Q
    |||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||||| |||||||||   ||||||||| ||||    
T  387599 atattattaaacgtcatcaccgcaagtcgcagggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 387511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 13512488 - 13512568
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    ||||| |||||||||||||||||||| |||||||||||||| |||||||||||| || ||||||||| ||| |||||||||    
T  13512488 aatcgaaaaatattattaaacgtcattcccgcaagacgcaatgtatggacgaaacaaaatacaaatgatgccgcatataga 13512568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 15457893 - 15457817
Alignment:
Q  160 atcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatat 236  Q
    ||||| ||||| ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||| ||||||    
T  15457893 atcggcaaataatattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcatat 15457817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 25280964 - 25281032
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggt 227  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||| |||||||    
T  25280964 aatcggaaaatattattaaacgtcatccccacaagacgcagggtatggacgaaacaagatataaatggt 25281032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 7461100 - 7461010
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacc 257  Q
    |||||||||||||||||||||||||||||||||  |||| ||||||| || |||||||||||| |||||||||| | ||||||||| |||||    
T  7461100 aaatattattaaacgtcatccccgcaagacgcagagtat-gacgaaacaaaatacaaatggtgttgcatatagacagtacaccataaccacc 7461010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 10524529 - 10524431
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| ||||||||||||||| || ||| |||||||||||||||||||||||| || ||||||||||||| |||||||||   ||||||||| ||||||    
T  10524529 aatcggcaaatattattaaacgcca-ccctgcaagacgcaaggtatggacgaaacaatatacaaatggtgcagcatatagatggtacaccataaccacct 10524431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 39338510 - 39338609
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| ||||||||||||||| ||||  || ||||||||| |||||||||||| |||||||||||||||| |||||||||   ||||||||| ||||||    
T  39338510 aatcggcaaatattattaaacgccatcatcgtaagacgcaatgtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 39338609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 7455676 - 7455604
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    ||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||| |||||    
T  7455676 aaataatattaaacgtcatccccgcaagacgca-ggtatgaacgaaataagatacaaatggtgccgcaaataga 7455604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 17116553 - 17116617
Alignment:
Q  175 taaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||| ||| |||||||||    
T  17116553 taaacgtcatccccgcaagacgcaaggtatggacgagacaagatacaaatgatgccgcatataga 17116617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 43816096 - 43816176
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||| ||||||||||||||||||| ||||||| ||||||||||||||||||| ||  |||||||| ||| |||||||||    
T  43816096 aatcggcaaatattattaaacgtcattcccgcaaaacgcaaggtatggacgaaacaaagtacaaatgatgccgcatataga 43816176  T

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Target: chr2; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 43248883 - 43248956
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    ||||||||||||||||||||| | |||||| |||||||||||||||| |||||| |||||| || |||||||||    
T  43248883 aaatattattaaacgtcatcctcacaagacacaaggtatggacgaaacaagatataaatggcgccgcatataga 43248956  T

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Target: chr2; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 14405623 - 14405532
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||||||||||||| || || |||||||| |||||||| |||||  ||||||||||||||||||||||||||   ||||||||| ||||||    
T  14405623 aaatattattaaacgttattcctgcaagacgtaaggtatgaacgaac-aagatacaaatggtgctgcatatagacggtacaccataaccacct 14405532  T

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Target: chr2; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 166 - 258
Target Start/End: Original strand, 41877208 - 41877300
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    ||||||||||||||  ||||||||||||||||||| ||||||||||| || ||||||||||| | | |||||||   ||||||||| ||||||    
T  41877208 aaatattattaaactccatccccgcaagacgcaagatatggacgaaacaatatacaaatggtaccgtatatagacggtacaccataaccacct 41877300  T

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Target: chr2; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 14106179 - 14106269
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacc 257  Q
    ||||||||||||||| ||||| ||||||||||| ||||| ||||||| |||||| ||||||||| |||||||||   ||||||||| |||||    
T  14106179 aaatattattaaacgccatcctcgcaagacgcagggtat-gacgaaacaagatagaaatggtgccgcatatagacggtacaccataaccacc 14106269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 9823761 - 9823695
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatg 225  Q
    |||||| ||||||||||||||| |||| ||||||||| ||||||||| | |||| ||||||||||||    
T  9823761 aatcggcaaatattattaaacgccatctccgcaagacacaaggtatgaatgaaacaagatacaaatg 9823695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 45311461 - 45311523
Alignment:
Q  167 aatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgc 229  Q
    |||||||||||||| || |||||||||| |||||| | |||||||| ||||||||||||||||    
T  45311461 aatattattaaacgccaaccccgcaagatgcaaggaaaggacgaaacaagatacaaatggtgc 45311523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 7874702 - 7874610
Alignment:
Q  166 aaatattattaaa-cgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacc 257  Q
    ||||||||||||| || ||||| |||||||| |||||||| ||| ||| ||||||||||||| || |||||||||   ||||||||| |||||    
T  7874702 aaatattattaaaacgccatcctcgcaagacacaaggtatagacaaaacaagatacaaatggcgccgcatatagacggtacaccataaccacc 7874610  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 22888552 - 22888621
Alignment:
Q  169 tattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||||||| |||||||| ||||||||||| ||||||| |||| ||| || |||||||||  ||||||||    
T  22888552 tattattaaatgtcatccc-gcaagacgcaatgtatggatgaaacaaggtagaaatggtgccacatataga 22888621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 19349 - 19270
Alignment:
Q  160 atcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    ||||| ||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||| |||||||||    
T  19349 atcggcaaatattattaaacgtcatcctcgcaagacgcatggtatggacgaaacaagatacaaatggtgccgcatataga 19270  T

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Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 18593674 - 18593575
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||| | ||||||| |||||||||   ||||||||| ||||||    
T  18593674 aatcggcaaatattattaaacgtcatccccgcaagatgcaaggtatggacgaaacaagataaatatggtgccgcatatagacggtacaccataaccacct 18593575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 5656748 - 5656822
Alignment:
Q  165 aaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||| ||| |||||||||    
T  5656748 aaaatattattaaacgccatcaccgcaagacgcaaggtatgaacgaaataagatacaaatgatgccgcatataga 5656822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 7161663 - 7161743
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||  |||||||||    
T  7161663 aatcggcaaatattattaaacgtcttccccacaagacgcaagatatggacgaaataagatacaaatagtgtagcatataga 7161743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 7453020 - 7452921
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||| |||||||||||||| ||||||  |||||||||||||||||||| ||  |||||||||||||||| |||||||||   ||||||||| ||||||    
T  7453020 aatcggcaaatattattaaacatcatccatgcaagacgcaaggtatggacaaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 7452921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 18313303 - 18313383
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||| ||||||||||||||||||| || | ||||||||||||||||| |||| ||||| |||||||||| |||||||||    
T  18313303 aatcggtaaatattattaaacgtcattcctgtaagacgcaaggtatggatgaaacaagatgcaaatggtgccgcatataga 18313383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 698792 - 698719
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    ||||||||||||||| |||| | |||||||| |||||||||| |||||| |||||||||||||| |||||||||    
T  698792 aaatattattaaacgacatctctgcaagacgtaaggtatggatgaaatatgatacaaatggtgccgcatataga 698719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 34378524 - 34378451
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    ||||||||||||||| |||| ||||||||||||||| |||||||| |  ||||||||||||||| |||||||||    
T  34378524 aaatattattaaacgccatctccgcaagacgcaaggcatggacgagacgagatacaaatggtgccgcatataga 34378451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 29087903 - 29087830
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    ||||||||||||||||||||||||||||| |||||       |||||||||||| |||||||||||||||| |||||||||    
T  29087903 aatcggaaaatattattaaacgtcatccctgcaag-------gtatggacgaaacaagatacaaatggtgccgcatataga 29087830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 18255099 - 18255179
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    |||||| ||||||| |||||||| ||||||| |||| ||| ||||| ||||||| ||||||||||| |||| |||||||||    
T  18255099 aatcggcaaatattgttaaacgttatccccgtaagatgcagggtatagacgaaacaagatacaaatagtgccgcatataga 18255179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 6130 - 6057
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatataga 239  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| | |||||||||||||||| | |||||||    
T  6130 aaatattattaaacgtcatccccgcaagacgcaagatatgaacgagacaagatacaaatggtgccgtatataga 6057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 48760 - 48668
Alignment:
Q  166 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    |||||||||| |||||| |||||||||||| |||| ||||||| ||| |||||||||||||||| |||||||||   ||||||||| ||||||    
T  48760 aaatattattcaacgtcctccccgcaagacacaagatatggactaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 48668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 2345 - 2421
Alignment:
Q  182 catccccgcaagacgcaaggtatggacgaaataagatacaaatggtgctgcatatagaaaatacaccatagccacct 258  Q
    ||||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||   ||||||||| ||||||    
T  2345 catccccacaagacgcaaggtatggacgaaacaagatacagatggtgccgcatatagacggtacaccataaccacct 2421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 35473 - 35526
Alignment:
Q  159 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaa 212  Q
    |||||| |||||||||| ||||||||||||| |||||| |||||||||||||||    
T  35473 aatcggcaaatattattgaacgtcatccccgtaagacgtaaggtatggacgaaa 35526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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