View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0497-Insertion-4 (Length: 510)
Name: NF0497-Insertion-4
Description: NF0497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0497-Insertion-4 |
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| [»] scaffold0722 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 140 - 477
Target Start/End: Original strand, 5015999 - 5016336
Alignment:
| Q |
140 |
ttttttgtggcagtgtcctttcttttggattaagctgatatcaataaacgactttcacgggttttatatttagtattgtcactctcttcatgtggaacaa |
239 |
Q |
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| T |
5015999 |
ttttttgtagcagtgtcctttcttttggattaagctgatatcaataaatgactttcacgggttttatatttagtattgtcactctcttcatgtggaacaa |
5016098 |
T |
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| Q |
240 |
tttccttacctaaaatctagcaatggttataattacatttggaaatttatacaagtactatctagttttctgctttttacagtgtatgtgcaacaaattt |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5016099 |
tttccttacctaaaatctagcaatggttataattacatttggaaatttatacaagtactatctagttttctgctttttacggtgtatgtgcaacaaattt |
5016198 |
T |
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| Q |
340 |
gaaaacattggtcttttaactagtgacaaatgacattatttcctatagtacatagtagtattatagtgaagtattcaagtatatatactggctgtaacnn |
439 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5016199 |
gaaaatattggtcttttaactagtgacaaatgacattatttcctatagtacatagtagtattatagtgaagtattcaagtatatatactggctgtaacaa |
5016298 |
T |
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| Q |
440 |
nnnnnnnnnntactagtgctatacaagaactgctggag |
477 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
5016299 |
aaaataaaaatactagtgctatacaagaactgctggag |
5016336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0722 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0722
Description:
Target: scaffold0722; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 2004 - 1969
Alignment:
| Q |
17 |
ttgatttcaaattattatcggtgttaaatgtattag |
52 |
Q |
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| T |
2004 |
ttgatttcaaattattatcggtgttaaatgtattag |
1969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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