View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0497_high_11 (Length: 315)
Name: NF0497_high_11
Description: NF0497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0497_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 30 - 302
Target Start/End: Complemental strand, 34420787 - 34420513
Alignment:
| Q |
30 |
taagaaacctgaaagagaaaaggaccacaacatgcctttcactttct--ttgtcgtcttgctagttcgattaatttctagtaatttaattagtttaccag |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34420787 |
taagaaacctgaaagagaaaaggaccacaacatacctttcactttctctttgtcgtcttgctagttcgattaatttctagtaatttaattagtttaccag |
34420688 |
T |
|
| Q |
128 |
ttccacggggttctaatttgtctgcaacatttccaagaactagtggacaaaaacttttgaggcaaaataatataattagatgctaatgataatgatatta |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34420687 |
ttccacggggttctaatttgtctgcaacatttccaagaactagtggacaaaaactttagaggcaaaataatataattagatgctaatgataatgatatta |
34420588 |
T |
|
| Q |
228 |
atactaataaaacagttacgtaggcgattcattgtgtatttctatatttctgtttgtatatattcatgaaacttc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34420587 |
atactaataaaacagttacgtaggcgattcattgggtatttctatatttctgtttgtatatattcatgaaacttc |
34420513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 516 times since January 2019
Visitors: 3481