View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0497_high_26 (Length: 210)

Name: NF0497_high_26
Description: NF0497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0497_high_26
NF0497_high_26
[»] chr5 (7 HSPs)
chr5 (47-156)||(41197356-41197466)
chr5 (47-156)||(30376427-30376537)
chr5 (47-151)||(36779403-36779507)
chr5 (56-153)||(34905579-34905677)
chr5 (47-98)||(12378608-12378660)
chr5 (56-150)||(29985435-29985530)
chr5 (100-153)||(34525-34578)
[»] chr2 (4 HSPs)
chr2 (47-156)||(29894321-29894431)
chr2 (47-154)||(36365043-36365151)
chr2 (47-156)||(24543214-24543324)
chr2 (97-153)||(12555410-12555466)
[»] chr3 (15 HSPs)
chr3 (47-156)||(51976761-51976871)
chr3 (47-156)||(36684906-36685016)
chr3 (47-156)||(8705713-8705823)
chr3 (47-156)||(9057600-9057710)
chr3 (47-156)||(45736467-45736577)
chr3 (69-156)||(4978436-4978524)
chr3 (80-153)||(38998911-38998984)
chr3 (80-153)||(37796609-37796682)
chr3 (90-153)||(20916413-20916476)
chr3 (90-153)||(20925375-20925438)
chr3 (47-137)||(47165345-47165436)
chr3 (84-156)||(49758956-49759028)
chr3 (89-146)||(32073607-32073664)
chr3 (90-152)||(10346527-10346589)
chr3 (91-152)||(27265803-27265864)
[»] chr1 (15 HSPs)
chr1 (47-156)||(11351597-11351707)
chr1 (47-156)||(21515206-21515314)
chr1 (54-153)||(2536489-2536589)
chr1 (54-154)||(6784281-6784382)
chr1 (54-153)||(44839864-44839964)
chr1 (88-156)||(20639591-20639659)
chr1 (90-152)||(3601265-3601327)
chr1 (80-153)||(51080706-51080779)
chr1 (90-152)||(2114361-2114423)
chr1 (66-151)||(39648376-39648462)
chr1 (90-152)||(17321880-17321942)
chr1 (47-127)||(32988886-32988965)
chr1 (89-146)||(26418788-26418845)
chr1 (89-146)||(32108435-32108492)
chr1 (90-152)||(12539121-12539183)
[»] chr4 (13 HSPs)
chr4 (47-154)||(43989258-43989366)
chr4 (54-153)||(19315897-19315997)
chr4 (61-153)||(1394129-1394223)
chr4 (110-156)||(5124644-5124690)
chr4 (47-139)||(43813171-43813264)
chr4 (90-152)||(9633063-9633125)
chr4 (90-152)||(35096913-35096975)
chr4 (89-146)||(13200849-13200906)
chr4 (89-146)||(47783000-47783057)
chr4 (117-152)||(17283592-17283627)
chr4 (90-152)||(1479275-1479337)
chr4 (90-152)||(6969614-6969676)
chr4 (92-144)||(1311155-1311207)
[»] chr8 (5 HSPs)
chr8 (47-156)||(18481234-18481344)
chr8 (54-153)||(26440810-26440910)
chr8 (66-153)||(7251110-7251198)
chr8 (80-153)||(11911398-11911471)
chr8 (80-156)||(32536160-32536236)
[»] chr7 (8 HSPs)
chr7 (47-156)||(23820524-23820634)
chr7 (54-153)||(21118399-21118498)
chr7 (47-133)||(24808771-24808855)
chr7 (45-149)||(40901803-40901908)
chr7 (97-152)||(12980735-12980790)
chr7 (90-148)||(20492489-20492547)
chr7 (89-146)||(29526837-29526894)
chr7 (90-146)||(10325110-10325166)
[»] chr6 (5 HSPs)
chr6 (54-153)||(4513076-4513176)
chr6 (47-156)||(942694-942804)
chr6 (80-152)||(19047092-19047164)
chr6 (82-152)||(13757537-13757607)
chr6 (89-146)||(15950809-15950866)
[»] scaffold0041 (1 HSPs)
scaffold0041 (45-149)||(48110-48215)


Alignment Details
Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 41197356 - 41197466
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 145  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||    
T  41197356 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacataagagt 41197455  T
Q  146 tctgaaaatta 156  Q
    |||||||||||    
T  41197456 tctgaaaatta 41197466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 30376427 - 30376537
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagatg-ggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 145  Q
    |||||| ||||||||| ||||||||||||||||| ||||||| |||||||||| |||||||||  ||||||||||||||||||||||||||||| |||||    
T  30376427 acatcatcataaacgttggagctagcatgagatgaggctaccgtagctaattcatgagcgaccctattggcttgcctcctattgaactcgacataagagt 30376526  T
Q  146 tctgaaaatta 156  Q
    | |||||||||    
T  30376527 tttgaaaatta 30376537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 151
Target Start/End: Original strand, 36779403 - 36779507
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 145  Q
    |||||| |||| |||||||||||| ||| ||||||| |||||||||||||| | |||| |||   ||||||||||||||||||| ||||||||| |||||    
T  36779403 acatcatcatagacgtgggagctaacat-agatgggactaccctagctaatccatgagtgacactattggcttgcctcctattgtactcgacatgagagt 36779501  T
Q  146 tctgaa 151  Q
    ||||||    
T  36779502 tctgaa 36779507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 34905677 - 34905579
Alignment:
Q  56 taaacgtgggagctagcatgagat-gggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaa 153  Q
    ||||| |||||| ||||||||||| |||||||    |||||||| |||||||||||||||| ||| |||||||||||||| |||  |||||||||||||    
T  34905677 taaacttgggagttagcatgagatcgggctacttgggctaattcatgagcgacctcattggtttgtctcctattgaactcaacacaagagttctgaaaa 34905579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 12378608 - 12378660
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagat-gggctaccctagctaattc 98  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  12378608 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattc 12378660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 56 - 150
Target Start/End: Complemental strand, 29985530 - 29985435
Alignment:
Q  56 taaacgtgggagctagcatgagat-gggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctga 150  Q
    |||| |||||||||| |||||  | ||||||||  |||||| |||||| |||||||||| ||||| || |||||||||||||||| ||||||||||    
T  29985530 taaatgtgggagctaacatgacctagggctacctgagctaactcgtgaacgacctcattagcttgtcttctattgaactcgacatgagagttctga 29985435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 34578 - 34525
Alignment:
Q  100 tgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaa 153  Q
    |||||||||  |||||||||| ||||||| |||||||||| |||||||||||||    
T  34578 tgagcgaccatattggcttgcttcctattaaactcgacatgagagttctgaaaa 34525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 29894321 - 29894431
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 145  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||    
T  29894321 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 29894420  T
Q  146 tctgaaaatta 156  Q
    |||||||||||    
T  29894421 tctgaaaatta 29894431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 36365151 - 36365043
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 145  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||    
T  36365151 acatcaccataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgacctcattggcttgcctcctattgaactcgacatgggagt 36365052  T
Q  146 tctgaaaat 154  Q
    |||||||||    
T  36365051 tctgaaaat 36365043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 24543324 - 24543214
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 145  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| |||||    
T  24543324 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcatcctattgaactcgacatgagagt 24543225  T
Q  146 tctgaaaatta 156  Q
    |||||||||||    
T  24543224 tctgaaaatta 24543214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 12555410 - 12555466
Alignment:
Q  97 tcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaa 153  Q
    |||| ||||||| ||||  |||||||||||||||||| ||||| |||||||||||||    
T  12555410 tcgtaagcgaccccattaacttgcctcctattgaacttgacatgagagttctgaaaa 12555466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 51976871 - 51976761
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagatgg-gctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 145  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||| |||||    
T  51976871 acatcatcataaacgtgggagctagcatgagatggagctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcggcatgagagt 51976772  T
Q  146 tctgaaaatta 156  Q
    |||||||||||    
T  51976771 tctgaaaatta 51976761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 36685016 - 36684906
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 145  Q
    |||||| |||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |||||    
T  36685016 acatcatcataaacgtgagagctagcatgagatggggctaccctagctaattcatgagcgaccccattagcttgcctcctattgaactcgacatgagagt 36684917  T
Q  146 tctgaaaatta 156  Q
    |||||||||||    
T  36684916 tctgaaaatta 36684906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 8705823 - 8705713
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 145  Q
    |||||| |||||||||||||||||| |||||||||| |||||||| ||||||| | |||||||||||| ||||||||||||||||||||||||| |||||    
T  8705823 acatcatcataaacgtgggagctagtatgagatggggctaccctaactaattcataagcgacctcattagcttgcctcctattgaactcgacatgagagt 8705724  T
Q  146 tctgaaaatta 156  Q
    |||||||||||    
T  8705723 tctgaaaatta 8705713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 9057710 - 9057600
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 145  Q
    |||||| |||||||||||||||||| |||||||||| |||||||| ||||||| | |||||||||||| ||||||||||||||||||||||||| |||||    
T  9057710 acatcatcataaacgtgggagctagtatgagatggggctaccctaactaattcataagcgacctcattagcttgcctcctattgaactcgacatgagagt 9057611  T
Q  146 tctgaaaatta 156  Q
    |||||||||||    
T  9057610 tctgaaaatta 9057600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 45736577 - 45736467
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagatg-ggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 145  Q
    |||||| |||||||||||||| |||||||||||| |||||||||||||||||   |||||  | ||||||  |||||||||||||||||||||| |||||    
T  45736577 acatcatcataaacgtgggagttagcatgagatgaggctaccctagctaatttacgagcgttcccattggtctgcctcctattgaactcgacatgagagt 45736478  T
Q  146 tctgaaaatta 156  Q
    |||||||||||    
T  45736477 tctgaaaatta 45736467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 4978436 - 4978524
Alignment:
Q  69 tagcatgagatg-ggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaatta 156  Q
    |||||||||||| |||||| ||||||||||| ||| |||||||||||||||| ||| |||| |||||||||| ||||||||||||||||    
T  4978436 tagcatgagatgtggctacgctagctaattcatgaacgacctcattggcttgtctcatattaaactcgacatgagagttctgaaaatta 4978524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 80 - 153
Target Start/End: Complemental strand, 38998984 - 38998911
Alignment:
Q  80 gggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaa 153  Q
    |||||||||| |||||||||||||||||| |||| |||||||||||||| |||||||||| |||||| ||||||    
T  38998984 gggctaccctcgctaattcgtgagcgaccccattagcttgcctcctattaaactcgacatgagagttttgaaaa 38998911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 153
Target Start/End: Complemental strand, 37796682 - 37796609
Alignment:
Q  80 gggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaa 153  Q
    |||||||||| ||||||| ||||||||||||||| |||||||||||||| |||||||||| || ||| ||||||    
T  37796682 gggctaccctcgctaatttgtgagcgacctcattagcttgcctcctattaaactcgacatgagtgttttgaaaa 37796609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 20916476 - 20916413
Alignment:
Q  90 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaa 153  Q
    |||||| ||| ||||||||||||| |||||||||||||||||||| |||| |||||||||||||    
T  20916476 agctaactcgggagcgacctcattcgcttgcctcctattgaactcaacataagagttctgaaaa 20916413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 20925438 - 20925375
Alignment:
Q  90 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaa 153  Q
    |||||| ||| ||||||||||||| |||||||||||||||||||| |||| |||||||||||||    
T  20925438 agctaactcgggagcgacctcattcgcttgcctcctattgaactcaacataagagttctgaaaa 20925375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 47165345 - 47165436
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgac 137  Q
    |||||| | ||||||||||||||||||||||||||| || || |  |||||||  |||||||| ||||| ||||||||||||||||||||||    
T  47165345 acatcaccgtaaacgtgggagctagcatgagatggggctgcctttcctaattcacgagcgaccccattgacttgcctcctattgaactcgac 47165436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 49758956 - 49759028
Alignment:
Q  84 taccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaatta 156  Q
    ||||||||  ||||| ||||||| | |||| |||||||||||||||||| |||||| ||||||||||||||||    
T  49758956 taccctagtcaattcatgagcgatcccattagcttgcctcctattgaacccgacataagagttctgaaaatta 49759028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 32073607 - 32073664
Alignment:
Q  89 tagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagtt 146  Q
    |||||||||| ||||| |||||||| |||||||||||| | |||||||||| ||||||    
T  32073607 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 32073664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 152
Target Start/End: Original strand, 10346527 - 10346589
Alignment:
Q  90 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 152  Q
    |||||| ||||||||||||  ||| ||||||||||| |||||||| ||||  |||||||||||    
T  10346527 agctaactcgtgagcgaccctattcgcttgcctcctgttgaactctacatgcgagttctgaaa 10346589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 27265864 - 27265803
Alignment:
Q  91 gctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 152  Q
    ||||||||||||||||||||||| | ||| ||| |||| ||||| |||| |||||| |||||    
T  27265864 gctaattcgtgagcgacctcattagtttgtctcttattaaactcaacatgagagttttgaaa 27265803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 11351597 - 11351707
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 145  Q
    |||||| ||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||    
T  11351597 acatcatcataaacgtggaagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 11351696  T
Q  146 tctgaaaatta 156  Q
    |||||||||||    
T  11351697 tctgaaaatta 11351707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 21515314 - 21515206
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 145  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||  ||||    
T  21515314 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacat--gagt 21515217  T
Q  146 tctgaaaatta 156  Q
    |||||||||||    
T  21515216 tctgaaaatta 21515206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 54 - 153
Target Start/End: Original strand, 2536489 - 2536589
Alignment:
Q  54 cataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 152  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  2536489 cataaacatgggagctagcatgagatggggctaccctaactaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttctgaaa 2536588  T
Q  153 a 153  Q
    |    
T  2536589 a 2536589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 54 - 154
Target Start/End: Complemental strand, 6784382 - 6784281
Alignment:
Q  54 cataaacgtgggagctagcatgagatgg-gctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 152  Q
    ||||||||||| |||||| ||||||||| |||||||||| |||||| | ||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  6784382 cataaacgtggaagctagtatgagatggagctaccctagttaattcataagcgaccccattggcttgcctcctattgaactcgacatgagagttctgaaa 6784283  T
Q  153 at 154  Q
    ||    
T  6784282 at 6784281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 54 - 153
Target Start/End: Original strand, 44839864 - 44839964
Alignment:
Q  54 cataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 152  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||| || ||||||||| ||||  |||||||||||||||||||||||| ||||||||||||    
T  44839864 cataaacgtaggagctagcattagatggggctaccctagctaactcatgagcgaccccattaacttgcctcctattgaactcgacatgagagttctgaaa 44839963  T
Q  153 a 153  Q
    |    
T  44839964 a 44839964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 20639659 - 20639591
Alignment:
Q  88 ctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaatta 156  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  20639659 ctagctaattcatgagtgacctcattggcttgcctcctattgaactcaacatgagagttctgaaaatta 20639591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 90 - 152
Target Start/End: Original strand, 3601265 - 3601327
Alignment:
Q  90 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 152  Q
    |||||| |||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||    
T  3601265 agctaactcgtgagcaacctcattcgcttgcctcctattgaactcgacatgagagttctgaaa 3601327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 51080706 - 51080779
Alignment:
Q  80 gggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaa 153  Q
    |||||||||| |||||||| ||||||||| |||| | |||||||||||| |||||||||| |||||| ||||||    
T  51080706 gggctaccctcgctaattcatgagcgaccccattagattgcctcctattaaactcgacatgagagttttgaaaa 51080779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 2114423 - 2114361
Alignment:
Q  90 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 152  Q
    ||||||||||||||||||| |||| |||| | |||| ||||||||||||| ||||||||||||    
T  2114423 agctaattcgtgagcgaccccattcgcttccttcctgttgaactcgacatgagagttctgaaa 2114361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 39648376 - 39648462
Alignment:
Q  66 agctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaa 151  Q
    ||||||||||||||||| |||||  ||||||||| |||||||||| ||| ||||| || ||||| |||||||||  |||||||||||    
T  39648376 agctagcatgagatggggctacctgagctaattcatgagcgacctaattagcttgacttctattaaactcgacacgagagttctgaa 39648462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 17321942 - 17321880
Alignment:
Q  90 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 152  Q
    |||||| |||||||| |||  ||| ||||||||||| ||||||||||||| ||||||||||||    
T  17321942 agctaactcgtgagctaccctatttgcttgcctcctgttgaactcgacatgagagttctgaaa 17321880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 32988886 - 32988965
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagat-gggctaccctagctaattcgtgagcgacctcattggcttgcctcctat 127  Q
    |||||| |||||||| || |||||||||||||| ||||||||||| ||||||| |||||||    |||||||||||||||||    
T  32988886 acatcatcataaacgcggaagctagcatgagatggggctaccctaactaattcatgagcga--aaattggcttgcctcctat 32988965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 26418788 - 26418845
Alignment:
Q  89 tagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagtt 146  Q
    |||||||||| ||||| |||||||| |||||||||||| | |||||||||| ||||||    
T  26418788 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 26418845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 32108492 - 32108435
Alignment:
Q  89 tagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagtt 146  Q
    |||||||||| ||||| |||||||| |||||||||||| | |||||||||| ||||||    
T  32108492 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 32108435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 12539183 - 12539121
Alignment:
Q  90 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 152  Q
    |||||| |||||||| | |  ||| ||||||||||| ||||||||||||| ||||||||||||    
T  12539183 agctaactcgtgagctatcctatttgcttgcctcctgttgaactcgacatgagagttctgaaa 12539121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 6e-36; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 47 - 154
Target Start/End: Original strand, 43989258 - 43989366
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 145  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| || ||    
T  43989258 acatcatcataaacgtgggagctagcatgagatggggctaccctaactaattcatgagcgacctcattggcttgcctcctattgaactcgacatgagcgt 43989357  T
Q  146 tctgaaaat 154  Q
    ||| |||||    
T  43989358 tctaaaaat 43989366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 54 - 153
Target Start/End: Original strand, 19315897 - 19315997
Alignment:
Q  54 cataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 152  Q
    ||||| ||||||||||| ||| || |||| |||||   |||||||| ||| ||||  |||||||||||||||||||||||||||||| ||||||||||||    
T  19315897 cataagcgtgggagctaccataaggtggggctacctgtgctaattcatgaacgactccattggcttgcctcctattgaactcgacatgagagttctgaaa 19315996  T
Q  153 a 153  Q
    |    
T  19315997 a 19315997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 153
Target Start/End: Complemental strand, 1394223 - 1394129
Alignment:
Q  61 gtgggagctagcatgagatggg--ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaa 153  Q
    |||||||||||||| |||||||  ||||    |||||||| ||| ||||| |||| ||||||||||||||||||||||||| |||||||||||||    
T  1394223 gtgggagctagcattagatggggactacttgtgctaattcatgaacgaccccattagcttgcctcctattgaactcgacatgagagttctgaaaa 1394129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 5124644 - 5124690
Alignment:
Q  110 cattggcttgcctcctattgaactcgacattagagttctgaaaatta 156  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||    
T  5124644 cattagcttgcctccgattgaactcgacattagagttctgaaaatta 5124690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 43813171 - 43813264
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacat 139  Q
    |||||| || ||||| | ||||||| |||||||||| |||||||| ||||||| ||| ||||| ||||| |||| || ||||||||||||||||    
T  43813171 acatcatcaaaaacgagagagctagtatgagatggggctaccctaactaattcatgaacgaccccattgacttgtctgctattgaactcgacat 43813264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 9633125 - 9633063
Alignment:
Q  90 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 152  Q
    |||||| |||| | ||||| ||||  |||||||||||||||||||||||| ||||||||||||    
T  9633125 agctaactcgtaatcgaccccattcacttgcctcctattgaactcgacatgagagttctgaaa 9633063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 35096975 - 35096913
Alignment:
Q  90 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 152  Q
    |||||| |||||||| |||  ||| |||||||| |||||||||||||||| ||||||||||||    
T  35096975 agctaactcgtgagcaaccctatttgcttgccttctattgaactcgacatgagagttctgaaa 35096913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 13200906 - 13200849
Alignment:
Q  89 tagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagtt 146  Q
    ||||||| || ||||| |||||||| |||||||||||| |||||||||||| ||||||    
T  13200906 tagctaactcatgagcaacctcatttgcttgcctcctaatgaactcgacatgagagtt 13200849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 47783057 - 47783000
Alignment:
Q  89 tagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagtt 146  Q
    |||||||||| ||||| |||||||| |||||||||||| | |||||||||| ||||||    
T  47783057 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 47783000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 17283592 - 17283627
Alignment:
Q  117 ttgcctcctattgaactcgacattagagttctgaaa 152  Q
    ||||||||||||||||||||||| ||||||||||||    
T  17283592 ttgcctcctattgaactcgacataagagttctgaaa 17283627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 152
Target Start/End: Original strand, 1479275 - 1479337
Alignment:
Q  90 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 152  Q
    |||||| | ||||| |||| ||||  ||||||||||||||||||||| || ||||||||||||    
T  1479275 agctaacttgtgagtgaccccatttacttgcctcctattgaactcgatatgagagttctgaaa 1479337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 6969676 - 6969614
Alignment:
Q  90 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 152  Q
    |||||| |||||||||||| ||||  ||| |||| ||||||| ||||||| ||||||||||||    
T  6969676 agctaactcgtgagcgaccccatttacttacctcttattgaaatcgacatgagagttctgaaa 6969614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 1311207 - 1311155
Alignment:
Q  92 ctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagag 144  Q
    |||| |||||||||||||||||| ||| ||||||||| ||||| |||| ||||    
T  1311207 ctaactcgtgagcgacctcattgacttacctcctattaaactcaacatgagag 1311155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 2e-32; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 18481344 - 18481234
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 145  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||  |||| |||| ||||| ||| |||||||||||||||||||| |||||    
T  18481344 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaatttatgagtgaccccattgacttacctcctattgaactcgacatgagagt 18481245  T
Q  146 tctgaaaatta 156  Q
    |||||||||||    
T  18481244 tctgaaaatta 18481234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 26440910 - 26440810
Alignment:
Q  54 cataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 152  Q
    ||||| |||| |||||||||| ||||||| ||||||||||||| || ||||| ||| |||| ||||||||||||||||||||||||| |||||||| |||    
T  26440910 cataatcgtgagagctagcattagatggggctaccctagctaactcatgagcaaccccattagcttgcctcctattgaactcgacatgagagttctaaaa 26440811  T
Q  153 a 153  Q
    |    
T  26440810 a 26440810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 66 - 153
Target Start/End: Complemental strand, 7251198 - 7251110
Alignment:
Q  66 agctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaa 153  Q
    ||||||||||||||||| ||||| ||| |||| | |||| || | |||||| ||||||||||||||||||||||| |||||||||||||    
T  7251198 agctagcatgagatggggctaccttagttaatgcatgagtgatcccattggtttgcctcctattgaactcgacataagagttctgaaaa 7251110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 11911398 - 11911471
Alignment:
Q  80 gggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaa 153  Q
    ||||| ||| |||||| ||||| | |||| |||| | || |||||||||||||||||||| |||||| ||||||    
T  11911398 gggcttcccgagctaactcgtgggggaccccattcgtttacctcctattgaactcgacatgagagttttgaaaa 11911471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 32536160 - 32536236
Alignment:
Q  80 gggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaatta 156  Q
    |||||||||||||||||||  |||||||| ||||  ||||  | | |||||||||||||| |||||||  |||||||    
T  32536160 gggctaccctagctaattcacgagcgaccccattaacttgttttcaattgaactcgacataagagttcataaaatta 32536236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 2e-32; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 23820634 - 23820524
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 145  Q
    |||||| |||||| |||||||||||||||||||||  |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||| || |||||    
T  23820634 acatcatcataaatgtgggagctagcatgagatggatctaccctatctaattcatgagcgaccccattggcttgcctcctattgaactcgatatgagagt 23820535  T
Q  146 tctgaaaatta 156  Q
    |||||||||||    
T  23820534 tctgaaaatta 23820524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 21118498 - 21118399
Alignment:
Q  54 cataaacgtgggagctagcatgagatgg-gctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 152  Q
    ||||||||| ||||||||||  |||||| ||||||||||||||  | |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  21118498 cataaacgttggagctagcaatagatggtgctaccctagctaac-catgagtgacctcattagcttgcctcctattgaactcgacatgagagttctgaaa 21118400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 24808771 - 24808855
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaact 133  Q
    |||||| |||||||||||   ||||||||||||||| ||| |||||||||||| |||| | || ||||||||||||||||||||||||    
T  24808771 acatcatcataaacgtgg---ctagcatgagatggggctatcctagctaattcatgagtggccccattggcttgcctcctattgaact 24808855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 40901803 - 40901908
Alignment:
Q  45 ggacatcagcataaacgtgggagctagcatgagatgg-gctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattaga 143  Q
    |||||||| |||| |  |||||||||||||||||||| ||||||   | |||||| |||||||||  ||| | |||||||||||| |||||||||| |||    
T  40901803 ggacatcatcatagatatgggagctagcatgagatggagctacctgtgttaattcatgagcgaccatattagtttgcctcctattcaactcgacatgaga 40901902  T
Q  144 gttctg 149  Q
    ||||||    
T  40901903 gttctg 40901908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 12980790 - 12980735
Alignment:
Q  97 tcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 152  Q
    |||||||||||| |||| | ||||||||| ||||||||||||| ||||||||||||    
T  12980790 tcgtgagcgaccccattcgtttgcctcctgttgaactcgacatgagagttctgaaa 12980735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 20492547 - 20492489
Alignment:
Q  90 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttct 148  Q
    |||||||||||||||||||  ||| |||||||||||||| ||||||| || ||||||||    
T  20492547 agctaattcgtgagcgaccctattcgcttgcctcctattaaactcgagatgagagttct 20492489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 29526894 - 29526837
Alignment:
Q  89 tagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagtt 146  Q
    |||||||||| ||||| |||||||| |||||||||||| | |||||||||| ||||||    
T  29526894 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 29526837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 10325110 - 10325166
Alignment:
Q  90 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagtt 146  Q
    |||||| || |||||||||||||| | |||||||||||| |||||||||| ||||||    
T  10325110 agctaactcatgagcgacctcattcgtttgcctcctattaaactcgacatgagagtt 10325166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 4513176 - 4513076
Alignment:
Q  54 cataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 152  Q
    ||||||| |||||||||| |||||||||| |||||||||||||||| | ||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  4513176 cataaacatgggagctagtatgagatggggctaccctagctaattcattagcgaccccattggcttgcctcctattgaactcgacatgagagttctgaaa 4513077  T
Q  153 a 153  Q
    |    
T  4513076 a 4513076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 942804 - 942694
Alignment:
Q  47 acatcagcataaacgtgggagctagcatgagatgggctac-cctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 145  Q
    |||||| | |||||||||||| |||||||||||||| |   ||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||    
T  942804 acatcatcgtaaacgtgggagatagcatgagatggggttgtcctagctaattcacgagcgaccccattggcttgcctcctattgaactcgacattagagt 942705  T
Q  146 tctgaaaatta 156  Q
    |||||||||||    
T  942704 tctgaaaatta 942694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 19047164 - 19047092
Alignment:
Q  80 gggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 152  Q
    |||||||||| |||||||||||||||||| |||| |||||||||||||| |||||||||| |||||| |||||    
T  19047164 gggctaccctcgctaattcgtgagcgaccacattagcttgcctcctattaaactcgacatgagagttttgaaa 19047092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 13757537 - 13757607
Alignment:
Q  82 gctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 152  Q
    |||| ||||||||||||||||||||||||||| | |||| || |||| ||||| |||| |||||| |||||    
T  13757537 gctatcctagctaattcgtgagcgacctcattagtttgcttcttattaaactcaacatgagagttttgaaa 13757607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 15950866 - 15950809
Alignment:
Q  89 tagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagtt 146  Q
    |||||||||| ||||| |||||||| |||||||||||| | |||||||||| ||||||    
T  15950866 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 15950809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 48215 - 48110
Alignment:
Q  45 ggacatcagcataaacgtgggagctagcatgagatgg-gctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattaga 143  Q
    |||||||| |||| |  |||||||||||||||||||| ||||||   | |||||| |||||||||  ||| | |||||||||||| |||||||||| |||    
T  48215 ggacatcatcatagatatgggagctagcatgagatggagctacctgtgttaattcatgagcgaccatattagtttgcctcctattcaactcgacatgaga 48116  T
Q  144 gttctg 149  Q
    ||||||    
T  48115 gttctg 48110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1678 times since January 2019
Visitors: 3461