View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0497_high_7 (Length: 434)
Name: NF0497_high_7
Description: NF0497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0497_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 30 - 431
Target Start/End: Complemental strand, 27757378 - 27756974
Alignment:
| Q |
30 |
tgaaggataataatgctttcgcctca--cattcatacaaagaaaatgactatttaccctttagtcaaatttatgnnnnnnnnnaatgaaagaaaactagc |
127 |
Q |
| |
|
||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27757378 |
tgaaggacaataatgctttcgcttcatacattcatacaaagaaaatgactatttaccctttagtcaaatttatgttttttt--aatgaaagaaaactagc |
27757281 |
T |
|
| Q |
128 |
tcttttcattaaagagagaagaagaatcactacattgtacggatatcaaaataaactcgagaaccactatatatgaccaccttagcaagatgaagaacaa |
227 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27757280 |
tcttttcattaaagatagaagaagaatcactacattgtacggatatcaaaataaactcgagaaccactatatatgaccaccttagcaagatgaagaacaa |
27757181 |
T |
|
| Q |
228 |
ccatgttagcgtctctcttagagaactcaacatgagttgtaaacactagattgaacgtatgtgatgacacttgttaataacaaaactgaacttagtacaa |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27757180 |
ccatgttagcgtctctcttagagaactcaacatgagttgtaaacactagattgaacgtatgtgatgac---tgttaataacaaaactgaacttagtacaa |
27757084 |
T |
|
| Q |
328 |
tcttgcataattctattataagcatcacctacaattttggagtgtgtagagaaaattatattatcaaatccaagct------cccaatgaattgcaacag |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27757083 |
tcttgcataattctattataagcatcacctacaattttggagtgtgtagagaaaattatattatcaaatccaagctctctgacccaatgaattgcaacag |
27756984 |
T |
|
| Q |
422 |
ctagggcttt |
431 |
Q |
| |
|
||| ||||| |
|
|
| T |
27756983 |
gtagtgcttt |
27756974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 310
Target Start/End: Complemental strand, 3254005 - 3253905
Alignment:
| Q |
209 |
ttagcaagatgaagaacaaccatgttagcgtctctcttagagaactcaacatgagttgtaaacactagattgaacgtatgtgatgacacttgttaataac |
308 |
Q |
| |
|
|||||||||||| || |||||| ||||| |||||||||||||| ||| |||||||| ||||||||||| | || ||||||| ||||||| ||||||| |
|
|
| T |
3254005 |
ttagcaagatgatgagcaaccacattagcttctctcttagagaattcagcatgagttataaacactagactcaa-atatgtgacgacacttcctaataac |
3253907 |
T |
|
| Q |
309 |
aa |
310 |
Q |
| |
|
|| |
|
|
| T |
3253906 |
aa |
3253905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 3253877 - 3253829
Alignment:
| Q |
356 |
ctacaattttggagtgtgtagagaaaattatattatcaaatccaagctc |
404 |
Q |
| |
|
||||||| ||||||| |||||||||||| | |||||||||||||||||| |
|
|
| T |
3253877 |
ctacaatcttggagtttgtagagaaaatcacattatcaaatccaagctc |
3253829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 129 times since January 2019
Visitors: 3464