View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0497_low_19 (Length: 251)
Name: NF0497_low_19
Description: NF0497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0497_low_19 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 47191894 - 47192115
Alignment:
| Q |
30 |
tacttcacaaaatccaaacaacccaccattgtttggatggctaacagagaccaacctgttaacggcaaacactcaaaactctcacttttcaaaaacggta |
129 |
Q |
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| T |
47191894 |
tacttcacaaaatccaaacaacccaccattgtttggatggctaacagagaccaacctgttaacggcaaacactcaaaactctcacttttcaaaaacggta |
47191993 |
T |
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| Q |
130 |
atctcattttaaccgatgcagacagaaaaagaacaccaatttggtccacttcatccttttctccttttccattacagctcaagcttcaaaacaatggcaa |
229 |
Q |
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| T |
47191994 |
atctcattttaaccgatgcagacagaaaaagaacaccaatttggtccacttcatccttttctccttttccattacagctcaagcttcaaaacaatggcaa |
47192093 |
T |
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| Q |
230 |
cctcgttctctccacgaccaac |
251 |
Q |
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| T |
47192094 |
cctcgttctctccacgaccaac |
47192115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 26745804 - 26745712
Alignment:
| Q |
58 |
ttgtttggatggctaacagagaccaacctgttaacggcaaacactcaaaactctcacttttcaaaaacggtaatctcattttaaccgatgcag |
150 |
Q |
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| T |
26745804 |
ttgtttggatggctaatcgtgaccaacctgttaacggaaaacgctcaacactttcccttctcaaaactggcaacctcattttaaccgacgcag |
26745712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 26677184 - 26677092
Alignment:
| Q |
58 |
ttgtttggatggctaacagagaccaacctgttaacggcaaacactcaaaactctcacttttcaaaaacggtaatctcattttaaccgatgcag |
150 |
Q |
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| T |
26677184 |
ttgtttggatggcaaatcgtgaccaaccagttaacggaaaacgctcaacactttcccttctcaaaaccggcaacctcgtcttaaccgatgcag |
26677092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 26688906 - 26688998
Alignment:
| Q |
58 |
ttgtttggatggctaacagagaccaacctgttaacggcaaacactcaaaactctcacttttcaaaaacggtaatctcattttaaccgatgcag |
150 |
Q |
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| T |
26688906 |
ttgtttggatggcaaatcgtgaccaaccagttaacggaaaacgctcaacactttcccttctcaaaaccggcaacctcgtcttaaccgatgcag |
26688998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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