View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0497_low_23 (Length: 240)
Name: NF0497_low_23
Description: NF0497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0497_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 336985 - 337195
Alignment:
| Q |
1 |
aaatcattcacaacaaagttgaggaatcattgattcctttattgaatcatgttcaacaacaaaatgggtcagtggtcgatttacaagacgtgttcaatcg |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
336985 |
aaatcattcacaacaaagttgagaaatcattgattcctttattgaatcatgttcaacaacaaaatgggtcggtggtcgatttacaagacgtgttcaatcg |
337084 |
T |
|
| Q |
101 |
cttcacatttgataacatttgttcaataattcttggacatgaccctaattgtctttccattgatttccctaaagttgcgtgcgagaaggcttttaaccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
337085 |
cttcacatttgataacatttgttcaataattcttggacatgaccctaattgtctttccattgatttccctgaagttgtgtgcgagaaggcttttaaccaa |
337184 |
T |
|
| Q |
201 |
gctgaagaatc |
211 |
Q |
| |
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||||||||||| |
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| T |
337185 |
gctgaagaatc |
337195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 341028 - 341230
Alignment:
| Q |
6 |
attcacaacaaagttgaggaatcattgattcctttattgaatcatgttcaacaacaaaatgggtcagtggtcgatttacaagacgtgttcaatcgcttca |
105 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||| ||||| ||||||||||||||||| ||||||||||| |||| |
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| T |
341028 |
attcacaacaaagttgagaaatcattgattccaatattgaatcatgttctacaacaaaaagggtcggtggtcgatttacaagatgtgttcaatcgattca |
341127 |
T |
|
| Q |
106 |
catttgataacatttgttcaataattcttggacatgaccctaattgtctttccattgatttccctaaagttgcgtgcgagaaggcttttaaccaagctga |
205 |
Q |
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|||| ||||||||||||| ||||||||||||||||| || ||||||||||| | |||||||| ||||| | | |||||||||||||||||||| || |
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| T |
341128 |
cattcgataacatttgtttgataattcttggacatgatccaaattgtctttcaacagatttccccgaagttccatctgagaaggcttttaaccaagcgga |
341227 |
T |
|
| Q |
206 |
aga |
208 |
Q |
| |
|
||| |
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|
| T |
341228 |
aga |
341230 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 332085 - 332219
Alignment:
| Q |
15 |
aaagttgaggaatcattgattcctttattgaatcatgttcaacaacaaaatgggtcagtggtcgatttacaagacgtgttcaatcgcttcacatttgata |
114 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| || ||||||||||||||||| |||| |
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| T |
332085 |
aaagttgagaaatcattatttcctttattgaaacatgttcaacaacaaaaagggtcgatggtcgatttacaagatgtattcaatcgcttcacattcgata |
332184 |
T |
|
| Q |
115 |
acatttgttcaataattcttggacatgaccctaat |
149 |
Q |
| |
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||||||| | ||||||||||||||||| |||||| |
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|
| T |
332185 |
acatttgcttgataattcttggacatgatcctaat |
332219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 210
Target Start/End: Original strand, 376798 - 376975
Alignment:
| Q |
30 |
ttgattcctttattgaatcatgttcaacaacaaaatgggtcagtggtcgatttacaagacgtgttcaatcgcttcacatttgataacatttgttcaataa |
129 |
Q |
| |
|
||||||||||| ||| | ||||| ||||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| || |
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| T |
376798 |
ttgattcctttgttggaccatgtacaacaacaa---gggtcagtggttgatttacaagatgtcttcaatcgcttcacatttgataacatttgttctgtag |
376894 |
T |
|
| Q |
130 |
ttcttggacatgaccctaattgtctttccattgatttccctaaagttgcgtgcgagaaggcttttaaccaagctgaagaat |
210 |
Q |
| |
|
|||||||| || ||||| |||||||||||||| ||||| | ||||| || |||||||||||| ||||| |||||||| |
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|
| T |
376895 |
ttcttggatgcgatcctaactgtctttccattgacttcccagacgttgcttgtgagaaggcttttgaccaaattgaagaat |
376975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 356357 - 356190
Alignment:
| Q |
30 |
ttgattcctttattgaatcatgttcaacaacaaaatgggtcagtggtcgatttacaagacgtgttcaatcgcttcacatttgataacatttgttcaataa |
129 |
Q |
| |
|
||||||||||| ||| | ||||| ||||||||| || |||||||| ||||||||||| || |||||||| |||||||| || ||||||||||| | |
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|
| T |
356357 |
ttgattcctttgttggaccatgtacaacaacaa---ggctcagtggtggatttacaagatgtcttcaatcgtttcacattcgacaacatttgttccgtgg |
356261 |
T |
|
| Q |
130 |
ttcttggacatgaccctaattgtctttccattgatttccctaaagttgcgtgcgagaaggcttttaaccaa |
200 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||| || | || ||||| ||||||||||| |||||| |
|
|
| T |
356260 |
ttcttggatgtgatcctaattgtctttccattgattttcccgatgtcgcgtgtgagaaggctttcaaccaa |
356190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 200
Target Start/End: Complemental strand, 347675 - 347531
Alignment:
| Q |
56 |
acaacaaaatgggtcagtggtcgatttacaagacgtgttcaatcgcttcacatttgataacatttgttcaataattcttggacatgaccctaattgtctt |
155 |
Q |
| |
|
||||||| | ||||||||||| ||||||||||| || |||||||| |||||||| | ||||||||||| || |||||||| ||| || ||||||||| |
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| T |
347675 |
acaacaacaagggtcagtggtggatttacaagatgtcttcaatcgtttcacattcaacaacatttgttccgtagttcttggatgtgatcccaattgtctt |
347576 |
T |
|
| Q |
156 |
tccattgatttccctaaagttgcgtgcgagaaggcttttaaccaa |
200 |
Q |
| |
|
|| |||||||| || | || ||||| ||||| |||||||||||| |
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|
| T |
347575 |
tcgattgattttcccgatgtcgcgtgtgagaaagcttttaaccaa |
347531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 332875 - 332940
Alignment:
| Q |
145 |
ctaattgtctttccattgatttccctaaagttgcgtgcgagaaggcttttaaccaagctgaagaat |
210 |
Q |
| |
|
|||| |||||||| |||||||| ||| |||||||||| |||||||||||||||||||||||||||| |
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|
| T |
332875 |
ctaactgtctttctattgattttcctcaagttgcgtgtgagaaggcttttaaccaagctgaagaat |
332940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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