View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0497_low_25 (Length: 233)

Name: NF0497_low_25
Description: NF0497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0497_low_25
NF0497_low_25
[»] chr2 (3 HSPs)
chr2 (25-140)||(39236576-39236691)
chr2 (43-90)||(15377448-15377495)
chr2 (204-233)||(39236483-39236512)
[»] chr6 (2 HSPs)
chr6 (43-90)||(14340937-14340984)
chr6 (52-90)||(24828749-24828787)
[»] scaffold0085 (1 HSPs)
scaffold0085 (43-90)||(26175-26222)
[»] chr7 (1 HSPs)
chr7 (43-90)||(22388038-22388085)
[»] chr1 (1 HSPs)
chr1 (43-90)||(49557030-49557077)
[»] chr8 (3 HSPs)
chr8 (43-89)||(6950225-6950271)
chr8 (43-89)||(42508698-42508744)
chr8 (35-87)||(26499594-26499646)
[»] chr5 (2 HSPs)
chr5 (43-91)||(913000-913048)
chr5 (43-87)||(13782003-13782047)
[»] chr3 (1 HSPs)
chr3 (50-90)||(2081212-2081252)


Alignment Details
Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 39236691 - 39236576
Alignment:
Q  25 aaaaagaatgtgtttgactaaacatcttaattaagtgcttatgacataaacacttatcatataagtatttgttttggcaatgttcacaacaaaataaatt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39236691 aaaaagaatgtgtttgactaaacatcttaattaagtgcttatgacataaacacttatcatataagtatttgttttggcaattttcacaacaaaataaatt 39236592  T
Q  125 tttagtgaaattattt 140  Q
    ||||||||||||||||    
T  39236591 tttagtgaaattattt 39236576  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 15377448 - 15377495
Alignment:
Q  43 taaacatcttaattaagtgcttatgacataaacacttatcatataagt 90  Q
    |||||| || |||||||||||||| ||||| |||||||||||||||||    
T  15377448 taaacaactgaattaagtgcttataacatacacacttatcatataagt 15377495  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 39236512 - 39236483
Alignment:
Q  204 caacttatgaatatgtcttccttcaaaaaa 233  Q
    ||||||||||||||||||||||||||||||    
T  39236512 caacttatgaatatgtcttccttcaaaaaa 39236483  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 14340984 - 14340937
Alignment:
Q  43 taaacatcttaattaagtgcttatgacataaacacttatcatataagt 90  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  14340984 taaacaacttaattaagtgcttataacataaacacttatcatataagt 14340937  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 24828787 - 24828749
Alignment:
Q  52 taattaagtgcttatgacataaacacttatcatataagt 90  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  24828787 taattaagagcttataacataaacacttatcatataagt 24828749  T

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Target: scaffold0085 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 26222 - 26175
Alignment:
Q  43 taaacatcttaattaagtgcttatgacataaacacttatcatataagt 90  Q
    |||||| |||||||||||||||||  ||||| ||||||||||||||||    
T  26222 taaacaccttaattaagtgcttatagcataagcacttatcatataagt 26175  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 22388085 - 22388038
Alignment:
Q  43 taaacatcttaattaagtgcttatgacataaacacttatcatataagt 90  Q
    |||||| |||||||||| |||||| ||||||||||||||||| |||||    
T  22388085 taaacaacttaattaagcgcttataacataaacacttatcatttaagt 22388038  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 49557030 - 49557077
Alignment:
Q  43 taaacatcttaattaagtgcttatgacataaacacttatcatataagt 90  Q
    |||||| ||||||||||||||||| || ||| ||||||||||||||||    
T  49557030 taaacagcttaattaagtgcttataacgtaatcacttatcatataagt 49557077  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 6950225 - 6950271
Alignment:
Q  43 taaacatcttaattaagtgcttatgacataaacacttatcatataag 89  Q
    |||||| |||||||||||||||||  ||||||| |||||||||||||    
T  6950225 taaacaacttaattaagtgcttatagcataaacgcttatcatataag 6950271  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 42508744 - 42508698
Alignment:
Q  43 taaacatcttaattaagtgcttatgacataaacacttatcatataag 89  Q
    |||||| ||||||||||||||| | ||||||||| ||||||||||||    
T  42508744 taaacaacttaattaagtgcttctaacataaacatttatcatataag 42508698  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 26499594 - 26499646
Alignment:
Q  35 tgtttgactaaacatcttaattaagtgcttatgacataaacacttatcatata 87  Q
    ||||||| |||||| ||||||||||||||||  |||||| | |||||||||||    
T  26499594 tgtttgaataaacaacttaattaagtgcttaaaacataagcgcttatcatata 26499646  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 913048 - 913000
Alignment:
Q  43 taaacatcttaattaagtgcttatgacataaacacttatcatataagta 91  Q
    |||||| ||||||||| |||||||   ||||||||||||||||||||||    
T  913048 taaacaacttaattaaatgcttatactataaacacttatcatataagta 913000  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 13782047 - 13782003
Alignment:
Q  43 taaacatcttaattaagtgcttatgacataaacacttatcatata 87  Q
    |||||| |||||||||| ||||||| ||||| |||||||||||||    
T  13782047 taaacaacttaattaagcgcttatggcataagcacttatcatata 13782003  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 2081252 - 2081212
Alignment:
Q  50 cttaattaagtgcttatgacataaacacttatcatataagt 90  Q
    ||||||||||||||| | |||||||| ||||||||||||||    
T  2081252 cttaattaagtgcttctaacataaacgcttatcatataagt 2081212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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