View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0497_low_3 (Length: 667)
Name: NF0497_low_3
Description: NF0497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0497_low_3 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 601; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 14 - 638
Target Start/End: Original strand, 336571 - 337195
Alignment:
| Q |
14 |
ctgttgctgtcacactcatcctcaccttattcctatttgcttatcaccaaacaaaatgcctcaaaaccccagccttcacaaattggccttttgttggtat |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336571 |
ctgtggctgtcacactcatcctcaccttattcctatttgcttatcaccaaacaaaatgcctcaaaaccccagccttcacaaattggccttttgttggtat |
336670 |
T |
|
| Q |
114 |
gttaccacaattcctttggaacatatcagacatccatgatttttcagctaaattgttgacatcaaaaggtggaacaatggagttcataggaccatggttt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
336671 |
gttaccacaattcctttggaacatatcagacatccatgatttttcagctaaattgttgacatcaaaaggtggaacaatggagttcataggaccatggttt |
336770 |
T |
|
| Q |
214 |
accaacatgtatgctgtaatcacaaacgatccattgaatgttcactacatcatgagcaagaggtttgacaattttgagaaaggtgaaaggtttcgtgaaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
336771 |
accaacatgtatgctgtaatcacaaacgatccattgaatgttcactacatcatgagcaagaggtttgacaattttgagaaaggtgaaaggtttcgtgaaa |
336870 |
T |
|
| Q |
314 |
cgttccaaccttttggtttaggaattttcacaacagattcacatcaatggaaatacaataggaatcttctccgatatctcttcaaacaaagaagctttga |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
336871 |
cgttccaaccttttggtttaggaattttcactacagattcacatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttga |
336970 |
T |
|
| Q |
414 |
agcttttcaagagaaaatcattcacaacaaagttgagaaatcattgattcctttattgaatcatgttcaacaacaaaatgggtcagtggtcgatttacaa |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
336971 |
agcttttcaagagaaaatcattcacaacaaagttgagaaatcattgattcctttattgaatcatgttcaacaacaaaatgggtcggtggtcgatttacaa |
337070 |
T |
|
| Q |
514 |
gacgtgttcaatcgcttcacatttgataacatttgttcaataattcttggacatgaccctaattgtctttccattgatttccctaaagttgcgtgcgaga |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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|
| T |
337071 |
gacgtgttcaatcgcttcacatttgataacatttgttcaataattcttggacatgaccctaattgtctttccattgatttccctgaagttgtgtgcgaga |
337170 |
T |
|
| Q |
614 |
aggcttttaaccaagctgaagaatc |
638 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
337171 |
aggcttttaaccaagctgaagaatc |
337195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 635
Target Start/End: Original strand, 340614 - 341230
Alignment:
| Q |
19 |
gctgtcacactcatcctcaccttattcctatttgcttatcaccaaacaaaatgcctcaaaaccccagccttcacaaattggccttttgttggtatgttac |
118 |
Q |
| |
|
||||| ||| ||||| ||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
340614 |
gctgtaacattcatcatcaccttattcctttttgcttctcatcaaacaaaatacctcaaaaccccagccttcacaaattggccttttcttggtatgttac |
340713 |
T |
|
| Q |
119 |
cacaattcctttggaacatatcagacatccatgatttttcagctaaattgttgacatcaaaaggtggaacaatggagttcataggaccatggtttaccaa |
218 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| |
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|
| T |
340714 |
cacaattcctttggaacatatcacaaattcatgatttttcagctaaattgttgaaatcaaaaggtggaacaattgagttcctaggaccatggtttaccgg |
340813 |
T |
|
| Q |
219 |
catgtatgctgtaatcacaaacgatccattgaatgttcactacatcatgagcaagaggtttgacaattttgagaaaggtgaaaggtttcgtgaaacgttc |
318 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||| ||||||||||| ||| |
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|
| T |
340814 |
catgtatggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcgtgaaatgttt |
340913 |
T |
|
| Q |
319 |
caaccttttggtttaggaattttcacaacagattcacatcaatggaaatacaataggaatcttctccgatatctcttcaaacaaagaagctttgaagctt |
418 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
340914 |
gaaccttttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagctt |
341013 |
T |
|
| Q |
419 |
ttcaagagaaaatcattcacaacaaagttgagaaatcattgattcctttattgaatcatgttcaacaacaaaatgggtcagtggtcgatttacaagacgt |
518 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||| ||||||||||||||||| || |
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|
| T |
341014 |
ttcaagagaagataattcacaacaaagttgagaaatcattgattccaatattgaatcatgttctacaacaaaaagggtcggtggtcgatttacaagatgt |
341113 |
T |
|
| Q |
519 |
gttcaatcgcttcacatttgataacatttgttcaataattcttggacatgaccctaattgtctttccattgatttccctaaagttgcgtgcgagaaggct |
618 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| ||||||||||||||||| || ||||||||||| | |||||||| ||||| | | ||||||||| |
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|
| T |
341114 |
gttcaatcgattcacattcgataacatttgtttgataattcttggacatgatccaaattgtctttcaacagatttccccgaagttccatctgagaaggct |
341213 |
T |
|
| Q |
619 |
tttaaccaagctgaaga |
635 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
341214 |
tttaaccaagcggaaga |
341230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 397 - 637
Target Start/End: Original strand, 376738 - 376975
Alignment:
| Q |
397 |
aaacaaagaagctttgaagcttttcaagagaaaatcattcacaacaaagttgagaaatcattgattcctttattgaatcatgttcaacaacaaaatgggt |
496 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||| | |||| | ||||||||||| ||| | ||||| ||||||||| |||| |
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|
| T |
376738 |
aaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgtacaacaacaa---gggt |
376834 |
T |
|
| Q |
497 |
cagtggtcgatttacaagacgtgttcaatcgcttcacatttgataacatttgttcaataattcttggacatgaccctaattgtctttccattgatttccc |
596 |
Q |
| |
|
||||||| ||||||||||| || |||||||||||||||||||||||||||||||| || |||||||| || ||||| |||||||||||||| ||||| |
|
|
| T |
376835 |
cagtggttgatttacaagatgtcttcaatcgcttcacatttgataacatttgttctgtagttcttggatgcgatcctaactgtctttccattgacttccc |
376934 |
T |
|
| Q |
597 |
taaagttgcgtgcgagaaggcttttaaccaagctgaagaat |
637 |
Q |
| |
|
| ||||| || |||||||||||| ||||| |||||||| |
|
|
| T |
376935 |
agacgttgcttgtgagaaggcttttgaccaaattgaagaat |
376975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 442 - 576
Target Start/End: Original strand, 332085 - 332219
Alignment:
| Q |
442 |
aaagttgagaaatcattgattcctttattgaatcatgttcaacaacaaaatgggtcagtggtcgatttacaagacgtgttcaatcgcttcacatttgata |
541 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| || ||||||||||||||||| |||| |
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|
| T |
332085 |
aaagttgagaaatcattatttcctttattgaaacatgttcaacaacaaaaagggtcgatggtcgatttacaagatgtattcaatcgcttcacattcgata |
332184 |
T |
|
| Q |
542 |
acatttgttcaataattcttggacatgaccctaat |
576 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||| |
|
|
| T |
332185 |
acatttgcttgataattcttggacatgatcctaat |
332219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 418 - 627
Target Start/End: Complemental strand, 356396 - 356190
Alignment:
| Q |
418 |
tttcaagagaaaatcattcacaacaaagttgagaaatcattgattcctttattgaatcatgttcaacaacaaaatgggtcagtggtcgatttacaagacg |
517 |
Q |
| |
|
|||||| ||||||||||||| ||||| | |||||| ||||||||||| ||| | ||||| ||||||||| || |||||||| ||||||||||| | |
|
|
| T |
356396 |
tttcaaaagaaaatcattcaaaacaagttggagaaaagtttgattcctttgttggaccatgtacaacaacaa---ggctcagtggtggatttacaagatg |
356300 |
T |
|
| Q |
518 |
tgttcaatcgcttcacatttgataacatttgttcaataattcttggacatgaccctaattgtctttccattgatttccctaaagttgcgtgcgagaaggc |
617 |
Q |
| |
|
| |||||||| |||||||| || ||||||||||| | |||||||| ||| ||||||||||||||||||||||| || | || ||||| |||||||| |
|
|
| T |
356299 |
tcttcaatcgtttcacattcgacaacatttgttccgtggttcttggatgtgatcctaattgtctttccattgattttcccgatgtcgcgtgtgagaaggc |
356200 |
T |
|
| Q |
618 |
ttttaaccaa |
627 |
Q |
| |
|
||| |||||| |
|
|
| T |
356199 |
tttcaaccaa |
356190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 418 - 627
Target Start/End: Complemental strand, 347737 - 347531
Alignment:
| Q |
418 |
tttcaagagaaaatcattcacaacaaagttgagaaatcattgattcctttattgaatcatgttcaacaacaaaatgggtcagtggtcgatttacaagacg |
517 |
Q |
| |
|
|||||| ||||||||||||| ||||| | |||| | ||||||||||| || | ||||| ||||||||| ||||||||||| ||||||||||| | |
|
|
| T |
347737 |
tttcaaaagaaaatcattcaaaacaagttggagagaagtttgattcctttgtttgaccatgtacaacaacaa---gggtcagtggtggatttacaagatg |
347641 |
T |
|
| Q |
518 |
tgttcaatcgcttcacatttgataacatttgttcaataattcttggacatgaccctaattgtctttccattgatttccctaaagttgcgtgcgagaaggc |
617 |
Q |
| |
|
| |||||||| |||||||| | ||||||||||| || |||||||| ||| || ||||||||||| |||||||| || | || ||||| ||||| || |
|
|
| T |
347640 |
tcttcaatcgtttcacattcaacaacatttgttccgtagttcttggatgtgatcccaattgtctttcgattgattttcccgatgtcgcgtgtgagaaagc |
347541 |
T |
|
| Q |
618 |
ttttaaccaa |
627 |
Q |
| |
|
|||||||||| |
|
|
| T |
347540 |
ttttaaccaa |
347531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 572 - 637
Target Start/End: Original strand, 332875 - 332940
Alignment:
| Q |
572 |
ctaattgtctttccattgatttccctaaagttgcgtgcgagaaggcttttaaccaagctgaagaat |
637 |
Q |
| |
|
|||| |||||||| |||||||| ||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
332875 |
ctaactgtctttctattgattttcctcaagttgcgtgtgagaaggcttttaaccaagctgaagaat |
332940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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