View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0497_low_32 (Length: 203)

Name: NF0497_low_32
Description: NF0497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0497_low_32
NF0497_low_32
[»] chr5 (7 HSPs)
chr5 (39-148)||(41197356-41197466)
chr5 (39-148)||(30376427-30376537)
chr5 (39-143)||(36779403-36779507)
chr5 (40-145)||(34905579-34905685)
chr5 (39-90)||(12378608-12378660)
chr5 (48-142)||(29985435-29985530)
chr5 (92-145)||(34525-34578)
[»] chr2 (4 HSPs)
chr2 (39-148)||(29894321-29894431)
chr2 (39-148)||(24543214-24543324)
chr2 (39-146)||(36365043-36365151)
chr2 (89-145)||(12555410-12555466)
[»] chr3 (15 HSPs)
chr3 (39-148)||(51976761-51976871)
chr3 (39-148)||(36684906-36685016)
chr3 (39-148)||(8705713-8705823)
chr3 (39-148)||(9057600-9057710)
chr3 (39-148)||(45736467-45736577)
chr3 (42-148)||(4978417-4978524)
chr3 (72-145)||(38998911-38998984)
chr3 (39-145)||(37796609-37796716)
chr3 (82-145)||(20916413-20916476)
chr3 (82-145)||(20925375-20925438)
chr3 (39-129)||(47165345-47165436)
chr3 (76-148)||(49758956-49759028)
chr3 (81-138)||(32073607-32073664)
chr3 (82-144)||(10346527-10346589)
chr3 (83-144)||(27265803-27265864)
[»] chr1 (15 HSPs)
chr1 (39-148)||(11351597-11351707)
chr1 (39-148)||(21515206-21515314)
chr1 (46-145)||(2536489-2536589)
chr1 (39-146)||(6784281-6784389)
chr1 (39-145)||(44839857-44839964)
chr1 (80-148)||(20639591-20639659)
chr1 (82-144)||(3601265-3601327)
chr1 (72-145)||(51080706-51080779)
chr1 (82-144)||(2114361-2114423)
chr1 (39-119)||(32988886-32988965)
chr1 (58-143)||(39648376-39648462)
chr1 (82-144)||(17321880-17321942)
chr1 (81-138)||(26418788-26418845)
chr1 (81-138)||(32108435-32108492)
chr1 (82-144)||(12539121-12539183)
[»] chr4 (13 HSPs)
chr4 (39-146)||(43989258-43989366)
chr4 (39-145)||(19315890-19315997)
chr4 (44-145)||(1394129-1394232)
chr4 (39-131)||(43813171-43813264)
chr4 (102-148)||(5124644-5124690)
chr4 (82-144)||(9633063-9633125)
chr4 (82-144)||(35096913-35096975)
chr4 (81-138)||(13200849-13200906)
chr4 (81-138)||(47783000-47783057)
chr4 (109-144)||(17283592-17283627)
chr4 (82-144)||(1479275-1479337)
chr4 (82-144)||(6969614-6969676)
chr4 (84-136)||(1311155-1311207)
[»] chr8 (5 HSPs)
chr8 (39-148)||(18481234-18481344)
chr8 (39-145)||(26440810-26440917)
chr8 (39-145)||(7251110-7251217)
chr8 (72-145)||(11911398-11911471)
chr8 (72-148)||(32536160-32536236)
[»] chr7 (8 HSPs)
chr7 (39-148)||(23820524-23820634)
chr7 (39-145)||(21118399-21118505)
chr7 (39-125)||(24808771-24808855)
chr7 (37-141)||(40901803-40901908)
chr7 (89-144)||(12980735-12980790)
chr7 (82-140)||(20492489-20492547)
chr7 (81-138)||(29526837-29526894)
chr7 (82-138)||(10325110-10325166)
[»] chr6 (6 HSPs)
chr6 (39-145)||(4513076-4513183)
chr6 (39-148)||(942694-942804)
chr6 (72-144)||(19047092-19047164)
chr6 (41-144)||(13757503-13757607)
chr6 (81-138)||(15950809-15950866)
chr6 (39-145)||(12125820-12125927)
[»] scaffold0041 (1 HSPs)
scaffold0041 (37-141)||(48110-48215)


Alignment Details
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 41197356 - 41197466
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||    
T  41197356 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacataagagt 41197455  T
Q  138 tctgaaaatta 148  Q
    |||||||||||    
T  41197456 tctgaaaatta 41197466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 30376427 - 30376537
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatg-ggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    |||||||||||||||| ||||||||||||||||| ||||||| |||||||||| |||||||||  ||||||||||||||||||||||||||||| |||||    
T  30376427 acatcatcataaacgttggagctagcatgagatgaggctaccgtagctaattcatgagcgaccctattggcttgcctcctattgaactcgacataagagt 30376526  T
Q  138 tctgaaaatta 148  Q
    | |||||||||    
T  30376527 tttgaaaatta 30376537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 36779403 - 36779507
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    ||||||||||| |||||||||||| ||| ||||||| |||||||||||||| | |||| |||   ||||||||||||||||||| ||||||||| |||||    
T  36779403 acatcatcatagacgtgggagctaacat-agatgggactaccctagctaatccatgagtgacactattggcttgcctcctattgtactcgacatgagagt 36779501  T
Q  138 tctgaa 143  Q
    ||||||    
T  36779502 tctgaa 36779507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 34905685 - 34905579
Alignment:
Q  40 catcatcataaacgtgggagctagcatgagat-gggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagtt 138  Q
    ||||||| ||||| |||||| ||||||||||| |||||||    |||||||| |||||||||||||||| ||| |||||||||||||| |||  ||||||    
T  34905685 catcatcgtaaacttgggagttagcatgagatcgggctacttgggctaattcatgagcgacctcattggtttgtctcctattgaactcaacacaagagtt 34905586  T
Q  139 ctgaaaa 145  Q
    |||||||    
T  34905585 ctgaaaa 34905579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 12378608 - 12378660
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagat-gggctaccctagctaattc 90  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12378608 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattc 12378660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 29985530 - 29985435
Alignment:
Q  48 taaacgtgggagctagcatgagat-gggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctga 142  Q
    |||| |||||||||| |||||  | ||||||||  |||||| |||||| |||||||||| ||||| || |||||||||||||||| ||||||||||    
T  29985530 taaatgtgggagctaacatgacctagggctacctgagctaactcgtgaacgacctcattagcttgtcttctattgaactcgacatgagagttctga 29985435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 34578 - 34525
Alignment:
Q  92 tgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaa 145  Q
    |||||||||  |||||||||| ||||||| |||||||||| |||||||||||||    
T  34578 tgagcgaccatattggcttgcttcctattaaactcgacatgagagttctgaaaa 34525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 29894321 - 29894431
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||    
T  29894321 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 29894420  T
Q  138 tctgaaaatta 148  Q
    |||||||||||    
T  29894421 tctgaaaatta 29894431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 24543324 - 24543214
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| |||||    
T  24543324 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcatcctattgaactcgacatgagagt 24543225  T
Q  138 tctgaaaatta 148  Q
    |||||||||||    
T  24543224 tctgaaaatta 24543214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 39 - 146
Target Start/End: Complemental strand, 36365151 - 36365043
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||    
T  36365151 acatcaccataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgacctcattggcttgcctcctattgaactcgacatgggagt 36365052  T
Q  138 tctgaaaat 146  Q
    |||||||||    
T  36365051 tctgaaaat 36365043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 12555410 - 12555466
Alignment:
Q  89 tcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaa 145  Q
    |||| ||||||| ||||  |||||||||||||||||| ||||| |||||||||||||    
T  12555410 tcgtaagcgaccccattaacttgcctcctattgaacttgacatgagagttctgaaaa 12555466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 51976871 - 51976761
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatgg-gctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||| |||||    
T  51976871 acatcatcataaacgtgggagctagcatgagatggagctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcggcatgagagt 51976772  T
Q  138 tctgaaaatta 148  Q
    |||||||||||    
T  51976771 tctgaaaatta 51976761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 36685016 - 36684906
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |||||    
T  36685016 acatcatcataaacgtgagagctagcatgagatggggctaccctagctaattcatgagcgaccccattagcttgcctcctattgaactcgacatgagagt 36684917  T
Q  138 tctgaaaatta 148  Q
    |||||||||||    
T  36684916 tctgaaaatta 36684906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 8705823 - 8705713
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    ||||||||||||||||||||||||| |||||||||| |||||||| ||||||| | |||||||||||| ||||||||||||||||||||||||| |||||    
T  8705823 acatcatcataaacgtgggagctagtatgagatggggctaccctaactaattcataagcgacctcattagcttgcctcctattgaactcgacatgagagt 8705724  T
Q  138 tctgaaaatta 148  Q
    |||||||||||    
T  8705723 tctgaaaatta 8705713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 9057710 - 9057600
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    ||||||||||||||||||||||||| |||||||||| |||||||| ||||||| | |||||||||||| ||||||||||||||||||||||||| |||||    
T  9057710 acatcatcataaacgtgggagctagtatgagatggggctaccctaactaattcataagcgacctcattagcttgcctcctattgaactcgacatgagagt 9057611  T
Q  138 tctgaaaatta 148  Q
    |||||||||||    
T  9057610 tctgaaaatta 9057600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 45736577 - 45736467
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatg-ggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||   |||||  | ||||||  |||||||||||||||||||||| |||||    
T  45736577 acatcatcataaacgtgggagttagcatgagatgaggctaccctagctaatttacgagcgttcccattggtctgcctcctattgaactcgacatgagagt 45736478  T
Q  138 tctgaaaatta 148  Q
    |||||||||||    
T  45736477 tctgaaaatta 45736467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 4978417 - 4978524
Alignment:
Q  42 tcatcataaacgtgggagctagcatgagatg-ggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttct 140  Q
    |||||||||| | | ||| |||||||||||| |||||| ||||||||||| ||| |||||||||||||||| ||| |||| |||||||||| ||||||||    
T  4978417 tcatcataaatgcgcgagttagcatgagatgtggctacgctagctaattcatgaacgacctcattggcttgtctcatattaaactcgacatgagagttct 4978516  T
Q  141 gaaaatta 148  Q
    ||||||||    
T  4978517 gaaaatta 4978524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 38998984 - 38998911
Alignment:
Q  72 gggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaa 145  Q
    |||||||||| |||||||||||||||||| |||| |||||||||||||| |||||||||| |||||| ||||||    
T  38998984 gggctaccctcgctaattcgtgagcgaccccattagcttgcctcctattaaactcgacatgagagttttgaaaa 38998911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 145
Target Start/End: Complemental strand, 37796716 - 37796609
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    ||||||||||||| |  || ||||| || ||||||| ||||||| ||||||| ||||||||||||||| |||||||||||||| |||||||||| || ||    
T  37796716 acatcatcataaatggtggggctaggatcagatggggctaccctcgctaatttgtgagcgacctcattagcttgcctcctattaaactcgacatgagtgt 37796617  T
Q  138 tctgaaaa 145  Q
    | ||||||    
T  37796616 tttgaaaa 37796609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 20916476 - 20916413
Alignment:
Q  82 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaa 145  Q
    |||||| ||| ||||||||||||| |||||||||||||||||||| |||| |||||||||||||    
T  20916476 agctaactcgggagcgacctcattcgcttgcctcctattgaactcaacataagagttctgaaaa 20916413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 20925438 - 20925375
Alignment:
Q  82 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaa 145  Q
    |||||| ||| ||||||||||||| |||||||||||||||||||| |||| |||||||||||||    
T  20925438 agctaactcgggagcgacctcattcgcttgcctcctattgaactcaacataagagttctgaaaa 20925375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 47165345 - 47165436
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgac 129  Q
    |||||| | ||||||||||||||||||||||||||| || || |  |||||||  |||||||| ||||| ||||||||||||||||||||||    
T  47165345 acatcaccgtaaacgtgggagctagcatgagatggggctgcctttcctaattcacgagcgaccccattgacttgcctcctattgaactcgac 47165436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 49758956 - 49759028
Alignment:
Q  76 taccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaatta 148  Q
    ||||||||  ||||| ||||||| | |||| |||||||||||||||||| |||||| ||||||||||||||||    
T  49758956 taccctagtcaattcatgagcgatcccattagcttgcctcctattgaacccgacataagagttctgaaaatta 49759028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 32073607 - 32073664
Alignment:
Q  81 tagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagtt 138  Q
    |||||||||| ||||| |||||||| |||||||||||| | |||||||||| ||||||    
T  32073607 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 32073664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 10346527 - 10346589
Alignment:
Q  82 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 144  Q
    |||||| ||||||||||||  ||| ||||||||||| |||||||| ||||  |||||||||||    
T  10346527 agctaactcgtgagcgaccctattcgcttgcctcctgttgaactctacatgcgagttctgaaa 10346589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 27265864 - 27265803
Alignment:
Q  83 gctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 144  Q
    ||||||||||||||||||||||| | ||| ||| |||| ||||| |||| |||||| |||||    
T  27265864 gctaattcgtgagcgacctcattagtttgtctcttattaaactcaacatgagagttttgaaa 27265803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 11351597 - 11351707
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||    
T  11351597 acatcatcataaacgtggaagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 11351696  T
Q  138 tctgaaaatta 148  Q
    |||||||||||    
T  11351697 tctgaaaatta 11351707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 21515314 - 21515206
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||  ||||    
T  21515314 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacat--gagt 21515217  T
Q  138 tctgaaaatta 148  Q
    |||||||||||    
T  21515216 tctgaaaatta 21515206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 2536489 - 2536589
Alignment:
Q  46 cataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 144  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  2536489 cataaacatgggagctagcatgagatggggctaccctaactaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttctgaaa 2536588  T
Q  145 a 145  Q
    |    
T  2536589 a 2536589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 39 - 146
Target Start/End: Complemental strand, 6784389 - 6784281
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatgg-gctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    |||| ||||||||||||| |||||| ||||||||| |||||||||| |||||| | ||||||| |||||||||||||||||||||||||||||| |||||    
T  6784389 acattatcataaacgtggaagctagtatgagatggagctaccctagttaattcataagcgaccccattggcttgcctcctattgaactcgacatgagagt 6784290  T
Q  138 tctgaaaat 146  Q
    |||||||||    
T  6784289 tctgaaaat 6784281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 44839857 - 44839964
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    |||| ||||||||||| ||||||||||| ||||||| ||||||||||||| || ||||||||| ||||  |||||||||||||||||||||||| |||||    
T  44839857 acattatcataaacgtaggagctagcattagatggggctaccctagctaactcatgagcgaccccattaacttgcctcctattgaactcgacatgagagt 44839956  T
Q  138 tctgaaaa 145  Q
    ||||||||    
T  44839957 tctgaaaa 44839964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 20639659 - 20639591
Alignment:
Q  80 ctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaatta 148  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  20639659 ctagctaattcatgagtgacctcattggcttgcctcctattgaactcaacatgagagttctgaaaatta 20639591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 3601265 - 3601327
Alignment:
Q  82 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 144  Q
    |||||| |||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||    
T  3601265 agctaactcgtgagcaacctcattcgcttgcctcctattgaactcgacatgagagttctgaaa 3601327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 51080706 - 51080779
Alignment:
Q  72 gggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaa 145  Q
    |||||||||| |||||||| ||||||||| |||| | |||||||||||| |||||||||| |||||| ||||||    
T  51080706 gggctaccctcgctaattcatgagcgaccccattagattgcctcctattaaactcgacatgagagttttgaaaa 51080779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 2114423 - 2114361
Alignment:
Q  82 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 144  Q
    ||||||||||||||||||| |||| |||| | |||| ||||||||||||| ||||||||||||    
T  2114423 agctaattcgtgagcgaccccattcgcttccttcctgttgaactcgacatgagagttctgaaa 2114361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 32988886 - 32988965
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagat-gggctaccctagctaattcgtgagcgacctcattggcttgcctcctat 119  Q
    ||||||||||||||| || |||||||||||||| ||||||||||| ||||||| |||||||    |||||||||||||||||    
T  32988886 acatcatcataaacgcggaagctagcatgagatggggctaccctaactaattcatgagcga--aaattggcttgcctcctat 32988965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 39648376 - 39648462
Alignment:
Q  58 agctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaa 143  Q
    ||||||||||||||||| |||||  ||||||||| |||||||||| ||| ||||| || ||||| |||||||||  |||||||||||    
T  39648376 agctagcatgagatggggctacctgagctaattcatgagcgacctaattagcttgacttctattaaactcgacacgagagttctgaa 39648462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 17321942 - 17321880
Alignment:
Q  82 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 144  Q
    |||||| |||||||| |||  ||| ||||||||||| ||||||||||||| ||||||||||||    
T  17321942 agctaactcgtgagctaccctatttgcttgcctcctgttgaactcgacatgagagttctgaaa 17321880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 26418788 - 26418845
Alignment:
Q  81 tagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagtt 138  Q
    |||||||||| ||||| |||||||| |||||||||||| | |||||||||| ||||||    
T  26418788 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 26418845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 32108492 - 32108435
Alignment:
Q  81 tagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagtt 138  Q
    |||||||||| ||||| |||||||| |||||||||||| | |||||||||| ||||||    
T  32108492 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 32108435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 12539183 - 12539121
Alignment:
Q  82 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 144  Q
    |||||| |||||||| | |  ||| ||||||||||| ||||||||||||| ||||||||||||    
T  12539183 agctaactcgtgagctatcctatttgcttgcctcctgttgaactcgacatgagagttctgaaa 12539121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 2e-38; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 39 - 146
Target Start/End: Original strand, 43989258 - 43989366
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| || ||    
T  43989258 acatcatcataaacgtgggagctagcatgagatggggctaccctaactaattcatgagcgacctcattggcttgcctcctattgaactcgacatgagcgt 43989357  T
Q  138 tctgaaaat 146  Q
    ||| |||||    
T  43989358 tctaaaaat 43989366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 19315890 - 19315997
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    |||| ||||||| ||||||||||| ||| || |||| |||||   |||||||| ||| ||||  |||||||||||||||||||||||||||||| |||||    
T  19315890 acataatcataagcgtgggagctaccataaggtggggctacctgtgctaattcatgaacgactccattggcttgcctcctattgaactcgacatgagagt 19315989  T
Q  138 tctgaaaa 145  Q
    ||||||||    
T  19315990 tctgaaaa 19315997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 1394232 - 1394129
Alignment:
Q  44 atcataaacgtgggagctagcatgagatggg--ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctg 141  Q
    |||||| | |||||||||||||| |||||||  ||||    |||||||| ||| ||||| |||| ||||||||||||||||||||||||| |||||||||    
T  1394232 atcatagatgtgggagctagcattagatggggactacttgtgctaattcatgaacgaccccattagcttgcctcctattgaactcgacatgagagttctg 1394133  T
Q  142 aaaa 145  Q
    ||||    
T  1394132 aaaa 1394129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 43813171 - 43813264
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacat 131  Q
    ||||||||| ||||| | ||||||| |||||||||| |||||||| ||||||| ||| ||||| ||||| |||| || ||||||||||||||||    
T  43813171 acatcatcaaaaacgagagagctagtatgagatggggctaccctaactaattcatgaacgaccccattgacttgtctgctattgaactcgacat 43813264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 5124644 - 5124690
Alignment:
Q  102 cattggcttgcctcctattgaactcgacattagagttctgaaaatta 148  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||    
T  5124644 cattagcttgcctccgattgaactcgacattagagttctgaaaatta 5124690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 9633125 - 9633063
Alignment:
Q  82 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 144  Q
    |||||| |||| | ||||| ||||  |||||||||||||||||||||||| ||||||||||||    
T  9633125 agctaactcgtaatcgaccccattcacttgcctcctattgaactcgacatgagagttctgaaa 9633063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 35096975 - 35096913
Alignment:
Q  82 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 144  Q
    |||||| |||||||| |||  ||| |||||||| |||||||||||||||| ||||||||||||    
T  35096975 agctaactcgtgagcaaccctatttgcttgccttctattgaactcgacatgagagttctgaaa 35096913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 13200906 - 13200849
Alignment:
Q  81 tagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagtt 138  Q
    ||||||| || ||||| |||||||| |||||||||||| |||||||||||| ||||||    
T  13200906 tagctaactcatgagcaacctcatttgcttgcctcctaatgaactcgacatgagagtt 13200849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 47783057 - 47783000
Alignment:
Q  81 tagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagtt 138  Q
    |||||||||| ||||| |||||||| |||||||||||| | |||||||||| ||||||    
T  47783057 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 47783000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 144
Target Start/End: Original strand, 17283592 - 17283627
Alignment:
Q  109 ttgcctcctattgaactcgacattagagttctgaaa 144  Q
    ||||||||||||||||||||||| ||||||||||||    
T  17283592 ttgcctcctattgaactcgacataagagttctgaaa 17283627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 1479275 - 1479337
Alignment:
Q  82 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 144  Q
    |||||| | ||||| |||| ||||  ||||||||||||||||||||| || ||||||||||||    
T  1479275 agctaacttgtgagtgaccccatttacttgcctcctattgaactcgatatgagagttctgaaa 1479337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 6969676 - 6969614
Alignment:
Q  82 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 144  Q
    |||||| |||||||||||| ||||  ||| |||| ||||||| ||||||| ||||||||||||    
T  6969676 agctaactcgtgagcgaccccatttacttacctcttattgaaatcgacatgagagttctgaaa 6969614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 1311207 - 1311155
Alignment:
Q  84 ctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagag 136  Q
    |||| |||||||||||||||||| ||| ||||||||| ||||| |||| ||||    
T  1311207 ctaactcgtgagcgacctcattgacttacctcctattaaactcaacatgagag 1311155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 9e-35; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 18481344 - 18481234
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||  |||| |||| ||||| ||| |||||||||||||||||||| |||||    
T  18481344 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaatttatgagtgaccccattgacttacctcctattgaactcgacatgagagt 18481245  T
Q  138 tctgaaaatta 148  Q
    |||||||||||    
T  18481244 tctgaaaatta 18481234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 39 - 145
Target Start/End: Complemental strand, 26440917 - 26440810
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    |||| ||||||| |||| |||||||||| ||||||| ||||||||||||| || ||||| ||| |||| ||||||||||||||||||||||||| |||||    
T  26440917 acattatcataatcgtgagagctagcattagatggggctaccctagctaactcatgagcaaccccattagcttgcctcctattgaactcgacatgagagt 26440818  T
Q  138 tctgaaaa 145  Q
    ||| ||||    
T  26440817 tctaaaaa 26440810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 145
Target Start/End: Complemental strand, 7251217 - 7251110
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    |||| ||||||| | ||| ||||||||||||||||| ||||| ||| |||| | |||| || | |||||| ||||||||||||||||||||||| |||||    
T  7251217 acattatcataatcatggaagctagcatgagatggggctaccttagttaatgcatgagtgatcccattggtttgcctcctattgaactcgacataagagt 7251118  T
Q  138 tctgaaaa 145  Q
    ||||||||    
T  7251117 tctgaaaa 7251110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 11911398 - 11911471
Alignment:
Q  72 gggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaa 145  Q
    ||||| ||| |||||| ||||| | |||| |||| | || |||||||||||||||||||| |||||| ||||||    
T  11911398 gggcttcccgagctaactcgtgggggaccccattcgtttacctcctattgaactcgacatgagagttttgaaaa 11911471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 32536160 - 32536236
Alignment:
Q  72 gggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaaatta 148  Q
    |||||||||||||||||||  |||||||| ||||  ||||  | | |||||||||||||| |||||||  |||||||    
T  32536160 gggctaccctagctaattcacgagcgaccccattaacttgttttcaattgaactcgacataagagttcataaaatta 32536236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 9e-35; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 23820634 - 23820524
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    ||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||| || |||||    
T  23820634 acatcatcataaatgtgggagctagcatgagatggatctaccctatctaattcatgagcgaccccattggcttgcctcctattgaactcgatatgagagt 23820535  T
Q  138 tctgaaaatta 148  Q
    |||||||||||    
T  23820534 tctgaaaatta 23820524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 39 - 145
Target Start/End: Complemental strand, 21118505 - 21118399
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatgg-gctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    |||| ||||||||||| ||||||||||  |||||| ||||||||||||||  | |||| ||||||||| ||||||||||||||||||||||||| |||||    
T  21118505 acattatcataaacgttggagctagcaatagatggtgctaccctagctaac-catgagtgacctcattagcttgcctcctattgaactcgacatgagagt 21118407  T
Q  138 tctgaaaa 145  Q
    ||||||||    
T  21118406 tctgaaaa 21118399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 24808771 - 24808855
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaact 125  Q
    ||||||||||||||||||   ||||||||||||||| ||| |||||||||||| |||| | || ||||||||||||||||||||||||    
T  24808771 acatcatcataaacgtgg---ctagcatgagatggggctatcctagctaattcatgagtggccccattggcttgcctcctattgaact 24808855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 40901803 - 40901908
Alignment:
Q  37 ggacatcatcataaacgtgggagctagcatgagatgg-gctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattaga 135  Q
    ||||||||||||| |  |||||||||||||||||||| ||||||   | |||||| |||||||||  ||| | |||||||||||| |||||||||| |||    
T  40901803 ggacatcatcatagatatgggagctagcatgagatggagctacctgtgttaattcatgagcgaccatattagtttgcctcctattcaactcgacatgaga 40901902  T
Q  136 gttctg 141  Q
    ||||||    
T  40901903 gttctg 40901908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 12980790 - 12980735
Alignment:
Q  89 tcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 144  Q
    |||||||||||| |||| | ||||||||| ||||||||||||| ||||||||||||    
T  12980790 tcgtgagcgaccccattcgtttgcctcctgttgaactcgacatgagagttctgaaa 12980735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 20492547 - 20492489
Alignment:
Q  82 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttct 140  Q
    |||||||||||||||||||  ||| |||||||||||||| ||||||| || ||||||||    
T  20492547 agctaattcgtgagcgaccctattcgcttgcctcctattaaactcgagatgagagttct 20492489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 29526894 - 29526837
Alignment:
Q  81 tagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagtt 138  Q
    |||||||||| ||||| |||||||| |||||||||||| | |||||||||| ||||||    
T  29526894 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 29526837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 10325110 - 10325166
Alignment:
Q  82 agctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagtt 138  Q
    |||||| || |||||||||||||| | |||||||||||| |||||||||| ||||||    
T  10325110 agctaactcatgagcgacctcattcgtttgcctcctattaaactcgacatgagagtt 10325166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 39 - 145
Target Start/End: Complemental strand, 4513183 - 4513076
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatggg-ctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    |||| ||||||||| |||||||||| |||||||||| |||||||||||||||| | ||||||| |||||||||||||||||||||||||||||| |||||    
T  4513183 acattatcataaacatgggagctagtatgagatggggctaccctagctaattcattagcgaccccattggcttgcctcctattgaactcgacatgagagt 4513084  T
Q  138 tctgaaaa 145  Q
    ||||||||    
T  4513083 tctgaaaa 4513076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 942804 - 942694
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatgggctac-cctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    |||||||| |||||||||||| |||||||||||||| |   ||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||    
T  942804 acatcatcgtaaacgtgggagatagcatgagatggggttgtcctagctaattcacgagcgaccccattggcttgcctcctattgaactcgacattagagt 942705  T
Q  138 tctgaaaatta 148  Q
    |||||||||||    
T  942704 tctgaaaatta 942694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 19047164 - 19047092
Alignment:
Q  72 gggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttctgaaa 144  Q
    |||||||||| |||||||||||||||||| |||| |||||||||||||| |||||||||| |||||| |||||    
T  19047164 gggctaccctcgctaattcgtgagcgaccacattagcttgcctcctattaaactcgacatgagagttttgaaa 19047092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 13757503 - 13757607
Alignment:
Q  41 atcatcataaacgtgggagctagcatgagatgg-gctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagttc 139  Q
    |||||||||||  | |||||||| || | |||| |||| ||||||||||||||||||||||||||| | |||| || |||| ||||| |||| ||||||     
T  13757503 atcatcataaaaattggagctaggattatatggagctatcctagctaattcgtgagcgacctcattagtttgcttcttattaaactcaacatgagagttt 13757602  T
Q  140 tgaaa 144  Q
    |||||    
T  13757603 tgaaa 13757607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 15950866 - 15950809
Alignment:
Q  81 tagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagtt 138  Q
    |||||||||| ||||| |||||||| |||||||||||| | |||||||||| ||||||    
T  15950866 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 15950809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 145
Target Start/End: Complemental strand, 12125927 - 12125820
Alignment:
Q  39 acatcatcataaacgtgggagctagcatgagatg-ggctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattagagt 137  Q
    ||||||||||| || ||| ||||||||||||||| ||||||    |||||||| ||||| || ||||| ||||||||| ||||||| |  |||| ||| |    
T  12125927 acatcatcatagacatggaagctagcatgagatgaggctacatgtgctaattcatgagccacttcattagcttgcctcatattgaattgaacatgagaat 12125828  T
Q  138 tctgaaaa 145  Q
    ||||||||    
T  12125827 tctgaaaa 12125820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 48215 - 48110
Alignment:
Q  37 ggacatcatcataaacgtgggagctagcatgagatgg-gctaccctagctaattcgtgagcgacctcattggcttgcctcctattgaactcgacattaga 135  Q
    ||||||||||||| |  |||||||||||||||||||| ||||||   | |||||| |||||||||  ||| | |||||||||||| |||||||||| |||    
T  48215 ggacatcatcatagatatgggagctagcatgagatggagctacctgtgttaattcatgagcgaccatattagtttgcctcctattcaactcgacatgaga 48116  T
Q  136 gttctg 141  Q
    ||||||    
T  48115 gttctg 48110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1472 times since January 2019
Visitors: 3452