View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0497_low_4 (Length: 605)
Name: NF0497_low_4
Description: NF0497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0497_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 30 - 493
Target Start/End: Complemental strand, 24653835 - 24653372
Alignment:
| Q |
30 |
aagagaaatttgacaaatgatctcatgagcgtactttggttgtgaagcaagaaactaggggtaaaattcttatagtaagattgtatgtagatgatttgat |
129 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24653835 |
aagaaaaatttgacaaatggcctcatgagcgtactttggttgtgaagcaagaaactaggggtaaaattcttataataagattgtatgtagatgatttgat |
24653736 |
T |
|
| Q |
130 |
ctatacatggaatgatgaatagacatttgaatgttttaaaaattctatgaagtgcaagtttgcattgactgatttaaaaaagagttatcagatatctcaa |
229 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24653735 |
ctatacatggaatgataagtagacatttgaatgttttaaaaattctatgaagtgcaagtttgcattgactgatttagaaaagagttatcagatatctcaa |
24653636 |
T |
|
| Q |
230 |
aggtacatattcattctgaaaatcctatacaagagaaacactagtgcataattgcatggatgatatgattcagattatgcaggtgatgtcgataatagaa |
329 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24653635 |
aggtacatatttattctgaaaatcctatacaagagaaacactagtgcagaattgcatggatggtatgattcagattatgcaggtgatgtcgataatagaa |
24653536 |
T |
|
| Q |
330 |
tatgtacatttgaatatgtttttatgctgggataaggatcaatatcttggtcttctaagaagcagcctattttcactctatccagaagtagcagcaactt |
429 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24653535 |
tatgcacatttggatatgtttttatgctgggataaggatcagtatcttggtcttctaagaagcagcctattttcactctatccagaagtagcagctactt |
24653436 |
T |
|
| Q |
430 |
catgtgcttgtcaagatgtttggatgagaagtatccttgatcaattaggggaatcacatgggaa |
493 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
24653435 |
catgtgcttgtcaagatgtttggatgagaaggatccttgatcaattaggggaatcaaatgggaa |
24653372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 586
Target Start/End: Complemental strand, 9938726 - 9938675
Alignment:
| Q |
535 |
tgtctaaaaatccagtgatgcgtggaagatacaaacacatagatgtgagata |
586 |
Q |
| |
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|||||||||| |||||||||| ||| |||| |||||| |||||||||||||| |
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|
| T |
9938726 |
tgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgagata |
9938675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 507
Target Start/End: Original strand, 7748491 - 7748542
Alignment:
| Q |
456 |
agaagtatccttgatcaattaggggaatcacatgggaaatgcaaagtgatac |
507 |
Q |
| |
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||||| ||||| |||||||||||||| ||||| |||||||||| |||||||| |
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| T |
7748491 |
agaaggatcctcgatcaattaggggagtcacaagggaaatgcacagtgatac |
7748542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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