View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0497_low_5 (Length: 533)
Name: NF0497_low_5
Description: NF0497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0497_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 35 - 523
Target Start/End: Original strand, 43664706 - 43665208
Alignment:
| Q |
35 |
ctaatagaaatctttggagatcgtaaaattcacatgtcctctttcatgcatggcaacatcaattccttctaaaattatacaataacaaatatatcaaagc |
134 |
Q |
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| T |
43664706 |
ctaatagaaatctttggagatcgtaaaattcacatgtcctatttcatgcatggcaacatcaatttcttctaaaattatacaataacaaatatatcaaagt |
43664805 |
T |
|
| Q |
135 |
tggtaaagtattttatcttttatcttttcctctctctcactaatataggaattacttttaaaatatacatcttttatccactttttcacactcgtcaaac |
234 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
43664806 |
tggtaaagtattttatcgtttatcttttcctctctctcactaatataggaattacttttaaaatatacatcttttatccactttttcacacacatcaaac |
43664905 |
T |
|
| Q |
235 |
atgcagtcaaaattaggaaccaaaataactagcataaataatgtta--------------tattaccgcaagaggaattccgaggacggaaaagagagcc |
320 |
Q |
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||| |||||||||||| |||||||||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| |
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| T |
43664906 |
atgtagtcaaaattagtaaccaaaataactaacataaataatgttagtaacggatagaaatattaccgcgagaggaattccgagaacggaaaagagagcc |
43665005 |
T |
|
| Q |
321 |
aacgcgccagcggtaataccaccggaaggtggaagaggatcagtatggctagcatccgcgtatactcgcgaatgctgagccaatttagtaaccaaaacag |
420 |
Q |
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||||| || || || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43665006 |
aacgcaccggcagtgatgccaccggaaggtggaagaggatcggtatggctagcatccgcgtatactcgcgaatgctgagccaatttagtaaccaaaacag |
43665105 |
T |
|
| Q |
421 |
tcatagccaaacaaattgcaagcaggaagttaacaataccccataacctcttcacaccaccaacaccacgcgccaacacatcaactcctagtgacgtggc |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43665106 |
tcatagccaaacaaattgcaagcaggaagttaacaataccccataacctcttcacaccaccaacaccacgcgccaacacatcaactcctagtgacgtggc |
43665205 |
T |
|
| Q |
521 |
acc |
523 |
Q |
| |
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||| |
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| T |
43665206 |
acc |
43665208 |
T |
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