View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0497_low_8 (Length: 415)
Name: NF0497_low_8
Description: NF0497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0497_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 319
Target Start/End: Original strand, 45059691 - 45059998
Alignment:
| Q |
12 |
atgaatgctgaaacatgttctgttgtgtcaaattttgatattggtagaaggacttttgagaataatcagaatcgtccaccacctgcttctgttgcagccg |
111 |
Q |
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| T |
45059691 |
atgaatgctgaaacatgttctgttgtgtcaaatttggatattggtagaaggacttttgagaataatcagaatcgtccaccacctgcttctgttgcagctg |
45059790 |
T |
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| Q |
112 |
ttgattttgatggtactttgtggaattactaaattgatcaaaattaaggagcttttgagataaatgaagaggggtccatgaagaaattatgaagcacatt |
211 |
Q |
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| T |
45059791 |
ttgattttgatggtaatttgtggaattactaaattgatccaaattaaggagcttttgagataaatgaagaggggtccatgaagaaattatgaagcatatt |
45059890 |
T |
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| Q |
212 |
atgttgtatagattttatctaaaaagatgttatgataaagcatatgttatgtaatataatcatggaagtgtaacaaatcttgtgcatgtcataagcatgg |
311 |
Q |
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| T |
45059891 |
atgttgtatagattttatctaaaaagatgttatgataaagcatatgttatgtaatataatcatggaagtgtaacaaatcttgtgcatgtcataagcatgg |
45059990 |
T |
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| Q |
312 |
atggttat |
319 |
Q |
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| T |
45059991 |
atggttat |
45059998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 43352303 - 43352413
Alignment:
| Q |
64 |
cttttgagaataatcagaatcgtccaccacctgcttctgttgcagccgttgattttgatggtactttgtggaattactaaattgatcaaaattaaggagc |
163 |
Q |
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| T |
43352303 |
cttttgtgaataatcagaactgttcaccacttgcttctgttgcagcttttgatttcgatggaactttgtggaattactaaattgattcaaattgaggaac |
43352402 |
T |
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| Q |
164 |
ttttgagataa |
174 |
Q |
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| T |
43352403 |
ttttgagataa |
43352413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 291
Target Start/End: Original strand, 43352486 - 43352563
Alignment:
| Q |
213 |
tgttgtatagattttatctaaaaagatgttatgataaagcatatgttatgtaatataatcatggaagtgtaacaaatct |
291 |
Q |
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|||||||||| ||||||||||||||||||||| || ||||||||||| || |||||| ||||||| ||||||||||||| |
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| T |
43352486 |
tgttgtatagtttttatctaaaaagatgttataatgaagcatatgtt-tgcaatatagtcatggacgtgtaacaaatct |
43352563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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