View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0498_high_11 (Length: 354)

Name: NF0498_high_11
Description: NF0498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0498_high_11
NF0498_high_11
[»] chr6 (2 HSPs)
chr6 (11-327)||(11725644-11725960)
chr6 (173-242)||(11718950-11719019)
[»] chr2 (5 HSPs)
chr2 (63-164)||(12313128-12313229)
chr2 (58-100)||(15977994-15978036)
chr2 (58-100)||(19629372-19629414)
chr2 (58-100)||(19826273-19826315)
chr2 (58-100)||(33941918-33941960)
[»] chr8 (2 HSPs)
chr8 (58-146)||(27754413-27754501)
chr8 (58-100)||(28769358-28769400)
[»] chr4 (1 HSPs)
chr4 (51-94)||(30338616-30338659)
[»] chr7 (1 HSPs)
chr7 (58-100)||(25596042-25596084)
[»] chr3 (3 HSPs)
chr3 (58-100)||(26542546-26542588)
chr3 (58-100)||(45535237-45535279)
chr3 (63-100)||(23808083-23808120)
[»] chr1 (1 HSPs)
chr1 (57-146)||(10199381-10199470)


Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 11725644 - 11725960
Alignment:
Q  11 cacagactcaaaataaggttaaattgttttggattggctaaaactgtttttgataagctattttggagagtttatgaaaataagttgaaannnnnnnatg 110  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       |||    
T  11725644 cacagactcaaaataaggttaaattgttttgtattggctaaaactgtttttgataagttattttggagagtttatgaaaataagttgaaatttttttatg 11725743  T
Q  111 aacatatcataaactgtttgaataagttctcccaaactctctcacaagagcttaatattagtggtttgtgtaacatggtatttgtcatttcttgtactag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11725744 aacatatcataaactgtttgaataagttctcccaaactctctcacaagagcttaatattagtggtttgtgtaacatggtatttgtcatttcttgtactag 11725843  T
Q  211 attgagaatattatctcttataacttgtaaatatttctttaacactttgctttgaatctttctcatgatgtgtaggattatatatgtttgaaagtagtcc 310  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11725844 attgagaatatcatctcttataacttgtaaatatttctttaacactttgctttgaatctttctcatgatgtgtaggattatatatgtttgaaagtagttc 11725943  T
Q  311 ttcatatgacacacatg 327  Q
    |||||||||||||||||    
T  11725944 ttcatatgacacacatg 11725960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 11718950 - 11719019
Alignment:
Q  173 ggtttgtgtaacatggtatttgtcatttcttgtactagattgagaatattatctcttataacttgtaaat 242  Q
    ||||||| || ||||  ||||| |||||||||  |||||||||||||||||| | || ||||||||||||    
T  11718950 ggtttgtatagcatgacatttgccatttcttgctctagattgagaatattatattttctaacttgtaaat 11719019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 12313229 - 12313128
Alignment:
Q  63 ataagctattttggagagtttatgaaaataagttgaaannnnnnnatgaacatatcataaactgtttgaataagttctcccaaactctctcacaagagct 162  Q
    ||||||||| |||||||| ||||||||||||| |||||       ||||||||  ||||| ||||||  |||| |||||||||||  ||||||||| |||    
T  12313229 ataagctatcttggagagcttatgaaaataaggtgaaatcaacttatgaacatggcataagctgttttcataaattctcccaaacaatctcacaagtgct 12313130  T
Q  163 ta 164  Q
    ||    
T  12313129 ta 12313128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 15977994 - 15978036
Alignment:
Q  58 ttttgataagctattttggagagtttatgaaaataagttgaaa 100  Q
    |||| |||||||||||||||||| ||||||||||||| |||||    
T  15977994 ttttcataagctattttggagagattatgaaaataagctgaaa 15978036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 19629372 - 19629414
Alignment:
Q  58 ttttgataagctattttggagagtttatgaaaataagttgaaa 100  Q
    |||| |||||||||  |||||||||||||||||||||||||||    
T  19629372 ttttcataagctatactggagagtttatgaaaataagttgaaa 19629414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 19826273 - 19826315
Alignment:
Q  58 ttttgataagctattttggagagtttatgaaaataagttgaaa 100  Q
    |||| |||||||||  |||||||||||||||||||||||||||    
T  19826273 ttttcataagctatactggagagtttatgaaaataagttgaaa 19826315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 33941918 - 33941960
Alignment:
Q  58 ttttgataagctattttggagagtttatgaaaataagttgaaa 100  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||    
T  33941918 ttttcataagctatcttggagagtttatgataataagttgaaa 33941960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 27754413 - 27754501
Alignment:
Q  58 ttttgataagctattttggagagtttatgaaaataagttgaaannnnnnnatgaacatatcataaactgtttgaataagttctcccaaa 146  Q
    |||| |||||||||||||||||| ||||||||||||| ||||        || | ||| |||||||||||||  |||||||||||||||    
T  27754413 ttttcataagctattttggagagcttatgaaaataagctgaacgcaacttataatcatgtcataaactgttttcataagttctcccaaa 27754501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 28769400 - 28769358
Alignment:
Q  58 ttttgataagctattttggagagtttatgaaaataagttgaaa 100  Q
    |||| |||||||||||||||||||||||| ||||||| |||||    
T  28769400 ttttcataagctattttggagagtttatggaaataagctgaaa 28769358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 30338659 - 30338616
Alignment:
Q  51 aaactgtttttgataagctattttggagagtttatgaaaataag 94  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||    
T  30338659 aaactgtttttcataagctctcttggagagtttatgaaaataag 30338616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 25596042 - 25596084
Alignment:
Q  58 ttttgataagctattttggagagtttatgaaaataagttgaaa 100  Q
    |||| ||||||||| |||||||| |||||||||||||||||||    
T  25596042 ttttcataagctatcttggagagcttatgaaaataagttgaaa 25596084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 26542546 - 26542588
Alignment:
Q  58 ttttgataagctattttggagagtttatgaaaataagttgaaa 100  Q
    |||| |||||||||| ||||||||||||| |||||||||||||    
T  26542546 ttttcataagctattatggagagtttatggaaataagttgaaa 26542588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 45535279 - 45535237
Alignment:
Q  58 ttttgataagctattttggagagtttatgaaaataagttgaaa 100  Q
    |||| |||||||||  |||||||||||||||||||||||||||    
T  45535279 ttttcataagctatactggagagtttatgaaaataagttgaaa 45535237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 23808120 - 23808083
Alignment:
Q  63 ataagctattttggagagtttatgaaaataagttgaaa 100  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  23808120 ataagctatcttggagagtttatgaaaataagatgaaa 23808083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 10199470 - 10199381
Alignment:
Q  57 tttttgataagctattttggagagtttatgaaaataagttgaaannnnnnnatgaacatatcataaactgtttgaataagttctcccaaa 146  Q
    ||||| |||||||||||| ||||| ||||||||||||| |||||       |||||||| |||||| || |||  || ||||||||||||    
T  10199470 tttttcataagctattttagagagcttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttcatgagttctcccaaa 10199381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 568 times since January 2019
Visitors: 3483