View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0498_high_14 (Length: 338)
Name: NF0498_high_14
Description: NF0498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0498_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 1341946 - 1341698
Alignment:
| Q |
1 |
cttgttggaaattatatttttctttgacatgatttcttgcttaaaattgtgtgttttatggttcatttcttgtggaaaatttggtttttgtggtttattt |
100 |
Q |
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| T |
1341946 |
cttgttggaaattaaatttttctttgacatgatttcttgcttaaaattgtgtgttttatggttcatttcttgtggaatatttggtttttatggtttattt |
1341847 |
T |
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| Q |
101 |
ctctgattcaatgttgaaaactgtgtttttattttatatatgatttcatgttgaagaatgtgttttagggttcatttctttatgttatgttaaaacattt |
200 |
Q |
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| T |
1341846 |
ctctgattcaatgttgaaaactgtgtttttattttatatatgatttcatgttgaagaatgtgttttagggttcatttctttatgttatgttaaaacattt |
1341747 |
T |
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| Q |
201 |
taattattgatttcaattcatttgagttttgatcttactgtgatgatgt |
249 |
Q |
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| T |
1341746 |
tatttattgatttcaattcatttgagttttgatcttactgtgttgatgt |
1341698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 31943837 - 31943610
Alignment:
| Q |
3 |
tgttggaaattatatttttctttgacatgatttcttgcttaaaattgtgtgttttatggttcatttctt---------gtggaaaatttggt-ttttgtg |
92 |
Q |
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|||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| | |
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| T |
31943837 |
tgttggaaattatattttaatt-gacatgatttcttgctgaaaattgtgtgttttatggttcatttctttgatttcttgtggaaaatttggtgttttagg |
31943739 |
T |
|
| Q |
93 |
gtttatttctctgattcaatgttgaaaactgtgtttttattttatatatgatttcatgttgaagaatgtgttttagggttcatttctttatgttatgtta |
192 |
Q |
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|||||||||| | ||| || ||||||||| ||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
31943738 |
gtttatttctgtaatttaaaattgaaaactatgtttttgttttatatacgatttcatgttgaaaaatgtgttttagggttcatttctttatgtcatgtta |
31943639 |
T |
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| Q |
193 |
aaacattttaattattgatttcaattcat |
221 |
Q |
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| T |
31943638 |
aaatatttttattattgattttaattcat |
31943610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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