View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0498_high_19 (Length: 288)
Name: NF0498_high_19
Description: NF0498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0498_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 39523933 - 39524168
Alignment:
| Q |
1 |
cagaaaagttgctcttctgttttcaatattgtaagtcacagcaaatcaaacactaaaagcttgacataaaatcatagctatccacacgaccttatacatt |
100 |
Q |
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| T |
39523933 |
cagaaaagttgctcttctgttttcaatattgtaagtcacagcaaatcaaacactaaaagcttgacataaaatcatagctatccacacgaccttatacatt |
39524032 |
T |
|
| Q |
101 |
ttatcttagttttttgtctatatgaatttagtatatgatgagatttgatttgatgcatgtgcaaaaagattttacattaacaggagttaacataaaatct |
200 |
Q |
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| T |
39524033 |
ttatcttagttttttgtctatatgaatttagtatatgatgagatttgatttgatgcatgtgcaaaaagattttacattaacaggagttaacataaaatct |
39524132 |
T |
|
| Q |
201 |
ttattatttcataaatgggtcacattaacttaacct |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
39524133 |
ttattatttcataaatgggtcacattaacttaacct |
39524168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 23260490 - 23260726
Alignment:
| Q |
1 |
cagaaaagttgctcttctgttttcaatattgtaagtcacagcaaatcaaacactaaaagcttgacataaaatcatagctatccacacgaccttatacatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23260490 |
cagaaaagttgctcttctgttttcaatattgtaagttacagcagatcaaacactaaaagcttgacataaaatcatagctatccacacgaccttatacatt |
23260589 |
T |
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| Q |
101 |
ttatcttagttttttgtctatatgaatttagtatatgatgagatttgatttgatgcatgtgc-aaaaagattttacattaacaggagttaacataaaatc |
199 |
Q |
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|||||||||| ||||||||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||| |||| |||||||||||| |
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| T |
23260590 |
ttatcttagtattttgtctatatgaatttactatacgatgagatttgataggatgcatgtgcaaaaaagattttacattaacgggagataacataaaatc |
23260689 |
T |
|
| Q |
200 |
tttattatttcataaatgggtcacattaacttaacct |
236 |
Q |
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|| |||||||||||||||||||||||||||||||||| |
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| T |
23260690 |
ttcattatttcataaatgggtcacattaacttaacct |
23260726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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