View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0498_high_20 (Length: 278)
Name: NF0498_high_20
Description: NF0498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0498_high_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 41036564 - 41036792
Alignment:
| Q |
1 |
tggtgatgatgtgtgtaaattgggattaaacattttcctcacttcaatctagtcatggactttctaattaccacaactgactccggaaaaagaaaagatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41036564 |
tggtgatgatgtgtgtaaattgggattaaccattttcctcacttcaatctagtcatggaatttctaattaccacaactgactccggaaaaagaaaagatt |
41036663 |
T |
|
| Q |
101 |
attagtactttccatgatagggatgagtactagatatagagcactaagcagcaaaacagtcaagaaattagagccaacactcgtcaattttaatannnnn |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41036664 |
attagtactttccatgatagggatgagtactagatatagagcactaagcagcaaaacagtcaagaaattagagccaacactcgtcaattttaata--ttt |
41036761 |
T |
|
| Q |
201 |
nnnnnctaatactttggtactgatgatgatg |
231 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
41036762 |
tttttctaatactttggtactgatgatgatg |
41036792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 41046460 - 41046575
Alignment:
| Q |
31 |
cattttcctcacttcaatctagtcatggactttctaattaccacaactgactccggaaaaagaaaagattattagtactttccatgatagggatgagtac |
130 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||| | || | |||||||||||||||||| |||| |
|
|
| T |
41046460 |
cattttcttcaattcaatctagtcatggactttcttattaccacaactgactccaaaaatagaaaagactggtacttctttccatgatagggatgggtac |
41046559 |
T |
|
| Q |
131 |
tagatatagagcacta |
146 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
41046560 |
caaatatagagcacta |
41046575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 583 times since January 2019
Visitors: 3483