View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0498_high_29 (Length: 213)
Name: NF0498_high_29
Description: NF0498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0498_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 38448097 - 38448285
Alignment:
| Q |
1 |
taactatgacttatatgaaaaagacattaacaacttacatgacaagcttcagcatgatgtaaatgattccttggacacaactatgtatggaaaaggggag |
100 |
Q |
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| T |
38448097 |
taactatgacttatatgaaaaagacattaacaacttacatgacaagcttcagcatgatgtaaatgattccttggacacaactatgtatggaaaaggggag |
38448196 |
T |
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| Q |
101 |
gagccagtttcttcggagcatgattttgaagtaaaccatgatgacttaatgaatccgaaactttggtttgacatcaacgaattactcaa |
189 |
Q |
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| T |
38448197 |
gagccagtttcttcggagcatgattttgaagtaaaccatgatgacttaatgaatccgaaactttggtttgacatcaacgaattactcaa |
38448285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 38448021 - 38448078
Alignment:
| Q |
93 |
aaggggaggagccagtttcttcggagcatgattttgaagtaaaccatgatgacttaat |
150 |
Q |
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| T |
38448021 |
aagggaagaagccagtttcttcggagaacgattttgaaggaaaccataacgacttaat |
38448078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 38343362 - 38343420
Alignment:
| Q |
108 |
tttcttcggagcatgattttgaagtaaaccatgatgacttaatgaatccgaaactttgg |
166 |
Q |
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| T |
38343362 |
tttcttcggagagcgatgttgaagtaaaccatgacgacataatgaatccggaactttgg |
38343420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 38447555 - 38447613
Alignment:
| Q |
108 |
tttcttcggagcatgattttgaagtaaaccatgatgacttaatgaatccgaaactttgg |
166 |
Q |
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| T |
38447555 |
tttcttcggagagcgatgttgaagtaaaccatgacgacataatgaatccggaactttgg |
38447613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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