View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0498_low_11 (Length: 382)
Name: NF0498_low_11
Description: NF0498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0498_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 353
Target Start/End: Original strand, 3652116 - 3652460
Alignment:
| Q |
9 |
agcagagagatacttaggttacaacaatgctattttagctcttgctccttatggagattattggcgaaacatgagaaaaatttcaactcttgagctttta |
108 |
Q |
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| T |
3652116 |
agcagggagatacttaggttacaacaatgctattttagctcttgctccttatggagattattggcgatacatgagaaaaatttcaactcttgagctttta |
3652215 |
T |
|
| Q |
109 |
tcaagtcataggcttgaaaagctaaagcatgttagagattttgagatatattctctagtaaaaaatttgtacacatttgtgnnnnnnncaaatggttcaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3652216 |
tcaagtcataggcttgaaaagctaaagcatgttagagattttgagatatattctctagtaaaaaatttgtacacatttgtgaaaaaaacaaatggttcaa |
3652315 |
T |
|
| Q |
209 |
ttgaagtacctattagcaagtttttagatcatatgacatttaatataattgtgaagatgatagctggtaaaagatttagtggtgaaacaataaatcaaga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3652316 |
ttgaagtacctattagcaagtttttagatcatatgacatttaatataattgtgaagatgatagctggtaaaagatttagtggtgaaacaataaatcaaga |
3652415 |
T |
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| Q |
309 |
agatagtgaggcatggagattaagaaatgcaattaaagatactac |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3652416 |
agatagtgaggcatggagattaagaaatgcaattaaagatactac |
3652460 |
T |
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