View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0498_low_15 (Length: 342)

Name: NF0498_low_15
Description: NF0498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0498_low_15
NF0498_low_15
[»] chr6 (6 HSPs)
chr6 (30-216)||(4366938-4367124)
chr6 (52-94)||(4371644-4371686)
chr6 (272-332)||(4367183-4367242)
chr6 (282-331)||(13648918-13648967)
chr6 (282-327)||(17290369-17290414)
chr6 (286-326)||(10685952-10685992)
[»] chr3 (3 HSPs)
chr3 (286-332)||(39176724-39176770)
chr3 (288-322)||(51842475-51842509)
chr3 (283-332)||(49492069-49492118)
[»] chr2 (1 HSPs)
chr2 (286-332)||(26423813-26423859)
[»] chr7 (3 HSPs)
chr7 (281-326)||(32026092-32026137)
chr7 (281-326)||(32034616-32034661)
chr7 (281-322)||(16371601-16371642)
[»] chr4 (5 HSPs)
chr4 (283-332)||(27979649-27979698)
chr4 (281-335)||(37255847-37255901)
chr4 (287-332)||(12591213-12591258)
chr4 (281-332)||(36669678-36669730)
chr4 (282-322)||(46959090-46959130)
[»] chr5 (2 HSPs)
chr5 (286-332)||(20205526-20205572)
chr5 (282-326)||(8646802-8646846)
[»] chr1 (5 HSPs)
chr1 (286-332)||(29823811-29823857)
chr1 (287-332)||(28943503-28943548)
chr1 (282-327)||(33417887-33417932)
chr1 (288-324)||(3336389-3336425)
chr1 (295-327)||(11745132-11745164)


Alignment Details
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 30 - 216
Target Start/End: Original strand, 4366938 - 4367124
Alignment:
Q  30 cttcttgctgctactgcttcagtgtggtttgttttggtctactcactttcccgctatttccttatattctctctctcttgaaattaaattaccaacctat 129  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  4366938 cttcttgctgctactgctacactgtggtttgttttggtctactcactttcccgctatttcattatattctctctctcttgagattaaattaccaacctat 4367037  T
Q  130 atcccacttactttttaccnnnnnnnncccactcaacacaattttaaatcacttaaaattagaaaatagttttgtcaatttcactga 216  Q
    |||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367038 atcccacttactttttaccaaaaaaaacccactcaacacaattttaaatcacttaaaattagaaaatagttttgtcaatttcactga 4367124  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 4371644 - 4371686
Alignment:
Q  52 tgtggtttgttttggtctactcactttcccgctatttccttat 94  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  4371644 tgtggtttgttttggtctactcactttcccgctatttctttat 4371686  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 4367183 - 4367242
Alignment:
Q  272 ggtctctcataaaattttcttcgacttttagtaccccaaaagtttttcatcttcacctttg 332  Q
    |||| |||||||||||||||||||||||||||| ||||||| ||||  |||||||||||||    
T  4367183 ggtccctcataaaattttcttcgacttttagta-cccaaaaattttctatcttcacctttg 4367242  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 13648967 - 13648918
Alignment:
Q  282 aaaattttcttcgacttttagtaccccaaaagtttttcatcttcaccttt 331  Q
    |||| ||||||| ||||||||| |||||||| | ||||||||||||||||    
T  13648967 aaaaatttcttcaacttttagtcccccaaaaatatttcatcttcaccttt 13648918  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 327
Target Start/End: Original strand, 17290369 - 17290414
Alignment:
Q  282 aaaattttcttcgacttttagtaccccaaaagtttttcatcttcac 327  Q
    |||| ||||||||||||||||| | | |||||||||||||||||||    
T  17290369 aaaaatttcttcgacttttagttctcaaaaagtttttcatcttcac 17290414  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 326
Target Start/End: Original strand, 10685952 - 10685992
Alignment:
Q  286 ttttcttcgacttttagtaccccaaaagtttttcatcttca 326  Q
    |||||||| ||||||||| | ||||||||||||||||||||    
T  10685952 ttttcttcaacttttagtgctccaaaagtttttcatcttca 10685992  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 39176724 - 39176770
Alignment:
Q  286 ttttcttcgacttttagtaccccaaaagtttttcatcttcacctttg 332  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||    
T  39176724 ttttcttcgacttttagtcccccaaaagtttttcatcttcacttttg 39176770  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 322
Target Start/End: Complemental strand, 51842509 - 51842475
Alignment:
Q  288 ttcttcgacttttagtaccccaaaagtttttcatc 322  Q
    |||||| ||||||||||||||||||||||||||||    
T  51842509 ttcttccacttttagtaccccaaaagtttttcatc 51842475  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 332
Target Start/End: Complemental strand, 49492118 - 49492069
Alignment:
Q  283 aaattttcttcgacttttagtaccccaaaagtttttcatcttcacctttg 332  Q
    |||||||||| |||||||||| | |||||||||||| |||||||| ||||    
T  49492118 aaattttctttgacttttagtcctccaaaagttttttatcttcacttttg 49492069  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 26423859 - 26423813
Alignment:
Q  286 ttttcttcgacttttagtaccccaaaagtttttcatcttcacctttg 332  Q
    |||||||||||||||||||| ||||||||||| ||||||||| ||||    
T  26423859 ttttcttcgacttttagtactccaaaagttttccatcttcacttttg 26423813  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 326
Target Start/End: Original strand, 32026092 - 32026137
Alignment:
Q  281 taaaattttcttcgacttttagtaccccaaaagtttttcatcttca 326  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||||    
T  32026092 taaaaatttcttcgacttttagttccctaaaagtttttcatcttca 32026137  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 326
Target Start/End: Original strand, 32034616 - 32034661
Alignment:
Q  281 taaaattttcttcgacttttagtaccccaaaagtttttcatcttca 326  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||||    
T  32034616 taaaaatttcttcgacttttagttccctaaaagtttttcatcttca 32034661  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 16371601 - 16371642
Alignment:
Q  281 taaaattttcttcgacttttagtaccccaaaagtttttcatc 322  Q
    |||||||||||| ||| |||||| ||||||||||||||||||    
T  16371601 taaaattttctttgacgtttagttccccaaaagtttttcatc 16371642  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 332
Target Start/End: Original strand, 27979649 - 27979698
Alignment:
Q  283 aaattttcttcgacttttagtaccccaaaagtttttcatcttcacctttg 332  Q
    |||||||||||||||||| || | ||||||||||||||||||||| ||||    
T  27979649 aaattttcttcgacttttcgtcctccaaaagtttttcatcttcacttttg 27979698  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 37255901 - 37255847
Alignment:
Q  281 taaaattttcttcgacttttagtaccccaaaagtttttcatcttcacctttgctt 335  Q
    ||||||||||||| | ||||||| || ||||||||||||||| |||| |||||||    
T  37255901 taaaattttcttctatttttagttcctcaaaagtttttcatcatcacttttgctt 37255847  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 12591213 - 12591258
Alignment:
Q  287 tttcttcgacttttagtaccccaaaagtttttcatcttcacctttg 332  Q
    ||||||| ||||||||| || |||||||||||||||||||| ||||    
T  12591213 tttcttcaacttttagtccctcaaaagtttttcatcttcacttttg 12591258  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 332
Target Start/End: Complemental strand, 36669730 - 36669678
Alignment:
Q  281 taaaattttc-ttcgacttttagtaccccaaaagtttttcatcttcacctttg 332  Q
    |||||||||| ||| ||||||||| |||||||| |||||||||||||| ||||    
T  36669730 taaaattttccttcaacttttagtcccccaaaaatttttcatcttcacttttg 36669678  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 46959090 - 46959130
Alignment:
Q  282 aaaattttcttcgacttttagtaccccaaaagtttttcatc 322  Q
    |||| ||||||| ||||||||||| ||||||||||||||||    
T  46959090 aaaaatttcttcaacttttagtacaccaaaagtttttcatc 46959130  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 20205526 - 20205572
Alignment:
Q  286 ttttcttcgacttttagtaccccaaaagtttttcatcttcacctttg 332  Q
    |||||||| ||||||||| | |||||||||||||| |||||||||||    
T  20205526 ttttcttcaacttttagtcctccaaaagtttttcaccttcacctttg 20205572  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 8646802 - 8646846
Alignment:
Q  282 aaaattttcttcgacttttagtaccccaaaagtttttcatcttca 326  Q
    |||| ||||||||||||||||| ||||||| ||||| ||||||||    
T  8646802 aaaaatttcttcgacttttagtcccccaaaggttttccatcttca 8646846  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 29823857 - 29823811
Alignment:
Q  286 ttttcttcgacttttagtaccccaaaagtttttcatcttcacctttg 332  Q
    |||| ||| ||||||||| ||||||||||||||||||||||| ||||    
T  29823857 tttttttcaacttttagtcccccaaaagtttttcatcttcacttttg 29823811  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 332
Target Start/End: Complemental strand, 28943548 - 28943503
Alignment:
Q  287 tttcttcgacttttagtaccccaaaagtttttcatcttcacctttg 332  Q
    ||||||| ||||||||| |||| |||||||||||||||||| ||||    
T  28943548 tttcttcaacttttagtccccctaaagtttttcatcttcacttttg 28943503  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 327
Target Start/End: Complemental strand, 33417932 - 33417887
Alignment:
Q  282 aaaattttcttcgacttttagtaccccaaaagtttttcatcttcac 327  Q
    |||| ||||||| ||||||||| | |||||||||||||||||||||    
T  33417932 aaaaatttcttcaacttttagtcctccaaaagtttttcatcttcac 33417887  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 3336389 - 3336425
Alignment:
Q  288 ttcttcgacttttagtaccccaaaagtttttcatctt 324  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  3336389 ttcttcaacttttagtcccccaaaagtttttcatctt 3336425  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 11745132 - 11745164
Alignment:
Q  295 acttttagtaccccaaaagtttttcatcttcac 327  Q
    ||||||||| |||||||||||||||||||||||    
T  11745132 acttttagtcccccaaaagtttttcatcttcac 11745164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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