View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0498_low_17 (Length: 338)
Name: NF0498_low_17
Description: NF0498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0498_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 1342126 - 1342161
Alignment:
| Q |
205 |
cttgacataagcattatcctccagcttatataaaat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
1342126 |
cttgacataagcattatcctccagcttatataaaat |
1342161 |
T |
|
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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 9394585 - 9394620
Alignment:
| Q |
205 |
cttgacataagcattatcctccagcttatataaaat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
9394585 |
cttgacataagcattatcctccagcttatataaaat |
9394620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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