View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0498_low_2 (Length: 559)
Name: NF0498_low_2
Description: NF0498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0498_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 22 - 466
Target Start/End: Complemental strand, 26812250 - 26811804
Alignment:
| Q |
22 |
catcatcacagccaacatccagaagtgacattacatgcaacagtcgagactcaagtcccacaacagggtgatcagcaacttctaaaagaccacggttgat |
121 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26812250 |
catcatcacacccaacatccagaagtgacattacatgcagcagtcgagactcaagtcccacaatagggtgatcagcaacttctaaaagaccacggttgat |
26812151 |
T |
|
| Q |
122 |
ctttttggaaatctctgtaactatctctttaataaactcatattcatatgcatctttcctgcgcccaatcagacaagtttgagtaaatgcatcagaatca |
221 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26812150 |
ctttttggaaatctctgtaactatcttcttaataaactcatattcatatgcatctttcctgcgcccaatcagacaagtttgagtaaatgcatcagaatca |
26812051 |
T |
|
| Q |
222 |
caattacacccatatattgtgatgatgtgatattacaattcaaattgtttcaacgtacaatgaacaatctttctaaacatgaaagaaaactgtaaaaaca |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||| ||||| |||||| | |
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| T |
26812050 |
caattacacccatatattgtgatgatgtgatattacaattcaaattgtttcaacatacaaagaacaatctttctaaagatgaaataaaaccctaaaaaga |
26811951 |
T |
|
| Q |
322 |
tatctttcctttttaaaatttaaggatgaaatgaatcgtcaattgtaattgaagacaaacaataaacataagaaaactaaataagagtgagatgaaga-- |
419 |
Q |
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|||||||||||||||| |||||||| | |||||||| |||||||| |||||||||||||||||| |||||| ||| |||||||||||| ||||||| |
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| T |
26811950 |
tatctttcctttttaacatttaaggctaaaatgaattgtcaattgaaattgaagacaaacaatatacataaaaaagaaaaataagagtgaaatgaagaat |
26811851 |
T |
|
| Q |
420 |
agcgtacttgaaatgatagccagataagttcgcagcttggtaaagag |
466 |
Q |
| |
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||| |||||||||||| ||||||||||||| || |||||| ||||| |
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| T |
26811850 |
agcttacttgaaatgaaagccagataagttaccaacttggttaagag |
26811804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 40 - 466
Target Start/End: Complemental strand, 26618344 - 26617917
Alignment:
| Q |
40 |
ccagaagtgacattacatgcaacagtcgagactcaagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatctttttggaaatctctgt |
139 |
Q |
| |
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||||||| ||| ||||| | | ||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||||| || |||||||||| |
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|
| T |
26618344 |
ccagaagcgactttacacgtagcagtcgagagtcaagtccaacaactaggtgatcagcaacttctaaaagaccacaattgatcttgttccaaatctctgt |
26618245 |
T |
|
| Q |
140 |
aactatctctttaataaactcatattcatatgcatctttcctgcgcccaatcagacaagtttgagtaaatgcatcagaatcacaattacacccatatatt |
239 |
Q |
| |
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|||||||| ||||||||||| ||||||||| |||||| ||||||||||| ||||||||||| ||||||| |||||||||| |||| ||| |||| |||| |
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| T |
26618244 |
aactatcttcttaataaactcgtattcatattcatcttccctgcgcccaaccagacaagtttaagtaaatacatcagaatctcaatcacagccatgtatt |
26618145 |
T |
|
| Q |
240 |
gtgatgatg-tgatattacaattcaaattgtttcaacgtacaatgaacaatctttctaaacatgaaagaaaactgtaaaaacatatctttcctttttaaa |
338 |
Q |
| |
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| ||||||| |||||||| || |||||| ||||||| | ||| |||||| ||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
26618144 |
gcgatgatgatgatattatgatacaaattttttcaacatgcaaagaacaaactttctaaacatgaaagaaaactcaaaaaacatatatttcctttttaac |
26618045 |
T |
|
| Q |
339 |
atttaaggatgaaatgaatcgtcaattgtaattgaagacaaacaataaacataagaaaactaaataagagtgagatgaagaagcgtacttgaaatgatag |
438 |
Q |
| |
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|| |||| | |||||||| |||||||| |||||||||||||||||| ||||||||| |||||||||||| ||||||||| || ||||||||||||| |
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| T |
26618044 |
atgtaagtgtaaaatgaattgtcaattgaaattgaagacaaacaatatccataagaaagaaaaataagagtgaaatgaagaagtgtgcttgaaatgatag |
26617945 |
T |
|
| Q |
439 |
ccagataagttcgcagcttggtaaagag |
466 |
Q |
| |
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||||||||||| |||||||| ||||| |
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| T |
26617944 |
ccagataagttataagcttggttaagag |
26617917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 40 - 466
Target Start/End: Complemental strand, 26724272 - 26723845
Alignment:
| Q |
40 |
ccagaagtgacattacatgcaacagtcgagactcaagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatctttttggaaatctctgt |
139 |
Q |
| |
|
||||||| ||| ||||| | | ||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||||| || |||||||||| |
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| T |
26724272 |
ccagaagcgactttacacgtagcagtcgagagtcaagtccaacaactaggtgatcagcaacttctaaaagaccacaattgatcttgttccaaatctctgt |
26724173 |
T |
|
| Q |
140 |
aactatctctttaataaactcatattcatatgcatctttcctgcgcccaatcagacaagtttgagtaaatgcatcagaatcacaattacacccatatatt |
239 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| |||||| ||||||||||| ||||||||||| ||||||| |||||||||| |||| ||| |||| |||| |
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|
| T |
26724172 |
aactatcttcttaataaactcgtattcatattcatcttccctgcgcccaaccagacaagtttaagtaaatacatcagaatctcaatcacagccatgtatt |
26724073 |
T |
|
| Q |
240 |
gtgatgatg-tgatattacaattcaaattgtttcaacgtacaatgaacaatctttctaaacatgaaagaaaactgtaaaaacatatctttcctttttaaa |
338 |
Q |
| |
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| ||||||| |||||||| || |||||| ||||||| | ||| |||||| ||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
26724072 |
gcgatgatgatgatattatgatacaaattttttcaacatgcaaagaacaaactttctaaacatgaaagaaaactcaaaaaacatatatttcctttttaac |
26723973 |
T |
|
| Q |
339 |
atttaaggatgaaatgaatcgtcaattgtaattgaagacaaacaataaacataagaaaactaaataagagtgagatgaagaagcgtacttgaaatgatag |
438 |
Q |
| |
|
|| |||| | |||||||| |||||||| |||||||||||||||||| ||||||||| |||||||||||| ||||||||| || ||||||||||||| |
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| T |
26723972 |
atgtaagtgtaaaatgaattgtcaattgaaattgaagacaaacaatatccataagaaagaaaaataagagtgaaatgaagaagtgtgcttgaaatgatag |
26723873 |
T |
|
| Q |
439 |
ccagataagttcgcagcttggtaaagag |
466 |
Q |
| |
|
||||||||||| |||||||| ||||| |
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| T |
26723872 |
ccagataagttataagcttggttaagag |
26723845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 26136606 - 26136432
Alignment:
| Q |
26 |
atcacagccaacatccagaagtgacattacatgcaacagtcgagactcaagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatcttt |
125 |
Q |
| |
|
||||||| ||||||| ||||||||| |||| |||| |||||||||||| || || ||| |||||||| ||||| | ||||||| ||||||||||||| |
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|
| T |
26136606 |
atcacagtcaacatctagaagtgactttacttgcagcagtcgagactcgagccc---aacggggtgatcggcaacatgtaaaagaacacggttgatcttg |
26136510 |
T |
|
| Q |
126 |
ttggaaatctctgtaactatctctttaataaactcatattcatatgcatctttcctgcgcccaatcagacaagtttga |
203 |
Q |
| |
|
|| |||||| |||||||||||| ||||||||||||||||| ||| | |||||||||||||||| |||| |||||||| |
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|
| T |
26136509 |
tttgaaatcactgtaactatcttcttaataaactcatattcgtattcttctttcctgcgcccaaccagataagtttga |
26136432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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