View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0498_low_20 (Length: 317)

Name: NF0498_low_20
Description: NF0498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0498_low_20
NF0498_low_20
[»] chr2 (2 HSPs)
chr2 (69-304)||(33225905-33226140)
chr2 (73-151)||(424755-424833)
[»] chr5 (1 HSPs)
chr5 (76-169)||(34660079-34660172)
[»] scaffold0002 (1 HSPs)
scaffold0002 (73-169)||(182344-182440)
[»] chr4 (2 HSPs)
chr4 (73-169)||(495077-495173)
chr4 (73-169)||(18192738-18192834)
[»] chr7 (2 HSPs)
chr7 (73-169)||(27228657-27228753)
chr7 (73-169)||(3504794-3504890)
[»] chr3 (1 HSPs)
chr3 (125-169)||(39891303-39891347)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 69 - 304
Target Start/End: Complemental strand, 33226140 - 33225905
Alignment:
Q  69 gttatgaacccagctcacataccattttaaagggcggacaacccaacccttggaacatactacaactctaggtggcgaagagccaacgtcgaggtgccaa 168  Q
    |||||||||||||||||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  33226140 gttatgaacccagctcacgtaccgttttaatgggcgaacaacccaacccttggaacatactacaactctaggtggcaaagagccgacgtcgaggtgccaa 33226041  T
Q  169 agctagattttattatgaaggaaaacatctccttccttctgtgaacccaaaccatatcattgagttcaaataccannnnnnnctttctttctagtcttga 268  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||       ||||||||||||||||||    
T  33226040 agctagattttattatgaaggaaaacatctccttccttatgtgaacccaaaccatatcactgagttcaaataccatttttttctttctttctagtcttga 33225941  T
Q  269 ctcttgatggcacttttagtatagcattctgttttc 304  Q
    ||||||||||||||||||||||||||||| ||||||    
T  33225940 ctcttgatggcacttttagtatagcattccgttttc 33225905  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 424755 - 424833
Alignment:
Q  73 tgaacccagctcacataccattttaaagggcggacaacccaacccttggaacatactacaactctaggtggcgaagagc 151  Q
    |||||| |||||||  |||  ||||| ||||| ||| ||||||||||||||||||||||| ||||||||||||||||||    
T  424755 tgaaccgagctcacgcaccgctttaatgggcgaacagcccaacccttggaacatactacagctctaggtggcgaagagc 424833  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 34660172 - 34660079
Alignment:
Q  76 acccagctcacataccattttaaagggcggacaacccaacccttggaacatactacaactctaggtggcgaagagccaacgtcgaggtgccaaa 169  Q
    ||||||||||| ||||  ||||| ||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| || |||||||||||||    
T  34660172 acccagctcacgtaccgctttaatgggcgaacaacccaacccttggaacatactacagctccaggtggcgaagagccgacatcgaggtgccaaa 34660079  T

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Target: scaffold0002 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 182344 - 182440
Alignment:
Q  73 tgaacccagctcacataccattttaaagggcggacaacccaacccttggaacatactacaactctaggtggcgaagagccaacgtcgaggtgccaaa 169  Q
    |||||||||||||| ||||  ||||| ||||| ||| ||||||||||||||||||||||| ||| ||||||||||||||| || |||||||||||||    
T  182344 tgaacccagctcacgtaccgctttaatgggcgaacagcccaacccttggaacatactacagctccaggtggcgaagagccgacatcgaggtgccaaa 182440  T

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Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 495173 - 495077
Alignment:
Q  73 tgaacccagctcacataccattttaaagggcggacaacccaacccttggaacatactacaactctaggtggcgaagagccaacgtcgaggtgccaaa 169  Q
    |||||||||||||| ||||  ||||| ||||| ||| ||||||||||||||||||||||| ||| ||||||||||||||| || |||||||||||||    
T  495173 tgaacccagctcacgtaccgctttaatgggcgaacagcccaacccttggaacatactacagctccaggtggcgaagagccgacatcgaggtgccaaa 495077  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 18192834 - 18192738
Alignment:
Q  73 tgaacccagctcacataccattttaaagggcggacaacccaacccttggaacatactacaactctaggtggcgaagagccaacgtcgaggtgccaaa 169  Q
    |||||||||||||| ||||  ||||| ||||| ||| |||||||||||||| |||||||| ||| ||||||||||||||| || |||||||||||||    
T  18192834 tgaacccagctcacgtaccgctttaatgggcgaacagcccaacccttggaatatactacagctccaggtggcgaagagccgacatcgaggtgccaaa 18192738  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 27228657 - 27228753
Alignment:
Q  73 tgaacccagctcacataccattttaaagggcggacaacccaacccttggaacatactacaactctaggtggcgaagagccaacgtcgaggtgccaaa 169  Q
    |||||||||||||| ||||  ||||| ||||| ||| ||||||||||||||||||||||| ||| ||||||||||||||| || |||||||| ||||    
T  27228657 tgaacccagctcacgtaccgctttaatgggcgaacagcccaacccttggaacatactacagctccaggtggcgaagagccgacatcgaggtgtcaaa 27228753  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 3504794 - 3504890
Alignment:
Q  73 tgaacccagctcacataccattttaaagggcggacaacccaacccttggaacatactacaactctaggtggcgaagagccaacgtcgaggtgccaaa 169  Q
    ||||||||| |||| ||||  ||||| ||||| ||| |||||||||||||| |||||||| ||| ||||||||||||||| || |||||||||||||    
T  3504794 tgaacccagttcacgtaccgctttaatgggcgaacagcccaacccttggaatatactacagctccaggtggcgaagagccgacatcgaggtgccaaa 3504890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 39891347 - 39891303
Alignment:
Q  125 atactacaactctaggtggcgaagagccaacgtcgaggtgccaaa 169  Q
    |||||||| ||| ||||||||||||||| || |||||||||||||    
T  39891347 atactacagctccaggtggcgaagagccgacatcgaggtgccaaa 39891303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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