View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0498_low_22 (Length: 311)
Name: NF0498_low_22
Description: NF0498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0498_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 79 - 270
Target Start/End: Complemental strand, 45591747 - 45591556
Alignment:
| Q |
79 |
aactacaccaaataaaaactatgtattgatattannnnnnnnactcttgcaaactactcgttgaaaaaatcaattatggggaaaatttgaagatggaaaa |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45591747 |
aactacaccaaataaaaactatgtattgatattattttttttactcatgtaaactactcgttgaaaaaatcaattatggggaaaatttgaagatggaaaa |
45591648 |
T |
|
| Q |
179 |
ttactcacgaatgaaagttctcttttatattaaaatcatcatgaaactaaaacgtaaaatttaaagtggtcaccttataccagactaaaaaa |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
45591647 |
ttactcacgaatgaaagttctcttttatattaaaatcatcatgaaactaaaacgtaaaatttaaagtggtcaccttataccagtccaaaaaa |
45591556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 45591861 - 45591792
Alignment:
| Q |
11 |
cagagactataagacaaagaaagacaaattttagaccttaaattcaattttgctattaaaactgcagaaa |
80 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45591861 |
cagagactataagacaaagaaagacaaattttagaccttacattcaattttgctattaaaactgcagaaa |
45591792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 193 times since January 2019
Visitors: 3465