View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0498_low_34 (Length: 249)
Name: NF0498_low_34
Description: NF0498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0498_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 11725486 - 11725246
Alignment:
| Q |
1 |
tctaacaaatgatattttannnnnnnccaaaactattaaaactctaaaattaatctctacaactagaatattaactatcaattccttatttataatccgt |
100 |
Q |
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| T |
11725486 |
tctaacaaatgatattttatttttttccaaaactattaaaactctaaaattaatctctacaactagaatattaactatcaattccttatttataatccgt |
11725387 |
T |
|
| Q |
101 |
ggaaatagtttataaataataagaacttacttatttatttattttttctgaaagaataagcgcttatacaataagttacaattannnnnnnnggaggaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11725386 |
ggaaatagtttataaataataagaacttacttatttatttattttttctgaaagaataagcgcttatacaataagttacaatt-ttttttttggaggaaa |
11725288 |
T |
|
| Q |
201 |
atataagttacaaattaattatatcatccaataagacctatg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
11725287 |
atataagttacaaattaattatatcatccaataagacctatg |
11725246 |
T |
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