View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0498_low_36 (Length: 244)

Name: NF0498_low_36
Description: NF0498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0498_low_36
NF0498_low_36
[»] chr4 (7 HSPs)
chr4 (34-180)||(14174247-14174393)
chr4 (58-180)||(28611501-28611623)
chr4 (124-180)||(14179001-14179057)
chr4 (124-180)||(28606805-28606861)
chr4 (125-180)||(11104774-11104829)
chr4 (125-180)||(44161894-44161949)
chr4 (124-181)||(48826701-48826758)
[»] chr8 (3 HSPs)
chr8 (58-180)||(12930985-12931107)
chr8 (125-180)||(12935731-12935786)
chr8 (133-178)||(26504850-26504895)
[»] chr3 (1 HSPs)
chr3 (34-178)||(51302966-51303110)
[»] chr7 (5 HSPs)
chr7 (103-178)||(15290541-15290616)
chr7 (68-180)||(2757156-2757268)
chr7 (125-178)||(37040426-37040479)
chr7 (125-180)||(12099306-12099361)
chr7 (125-176)||(12084700-12084751)
[»] chr5 (4 HSPs)
chr5 (58-177)||(38994631-38994751)
chr5 (124-180)||(42910992-42911048)
chr5 (125-178)||(29106878-29106931)
chr5 (93-180)||(38997106-38997193)
[»] chr1 (1 HSPs)
chr1 (125-180)||(34907448-34907503)
[»] chr2 (1 HSPs)
chr2 (124-180)||(8539493-8539549)
[»] chr6 (1 HSPs)
chr6 (125-172)||(2100199-2100246)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 34 - 180
Target Start/End: Complemental strand, 14174393 - 14174247
Alignment:
Q  34 tgagtttaatcatcgtaccagtgttaccagtgttctcctccatttaatttacactatactctcgagctccaaccggagctctgataccacttgttgggct 133  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14174393 tgagtttaatcatcgtaccagtgttaccagttttctcctccatttaatttacactatactctcaagctccaaccggagctctgataccacttgttgggct 14174294  T
Q  134 cgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14174293 cgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 14174247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 58 - 180
Target Start/End: Original strand, 28611501 - 28611623
Alignment:
Q  58 taccagtgttctcctccatttaatttacactatactctcgagctccaaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaa 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611501 taccagtgttctcctccatttaatttacactatactctcgagctccaatcggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaa 28611600  T
Q  158 ttaaaattccaaaatccaaaaga 180  Q
    |||||||||||||||||||||||    
T  28611601 ttaaaattccaaaatccaaaaga 28611623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 14179057 - 14179001
Alignment:
Q  124 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14179057 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 14179001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 28606805 - 28606861
Alignment:
Q  124 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28606805 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 28606861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 11104829 - 11104774
Alignment:
Q  125 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11104829 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 11104774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 44161949 - 44161894
Alignment:
Q  125 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44161949 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 44161894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 48826701 - 48826758
Alignment:
Q  124 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagat 181  Q
    |||||||| |||||||||||||||||| |||||||||||||| |||||| ||| ||||    
T  48826701 ttgttgggatcgacgagcttaacgcaattgtaaattaaaatttcaaaattcaagagat 48826758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 58 - 180
Target Start/End: Complemental strand, 12931107 - 12930985
Alignment:
Q  58 taccagtgttctcctccatttaatttacactatactctcgagctccaaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaa 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12931107 taccagtgttctcctccatttaatttacactatactctcgagctccaaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaa 12931008  T
Q  158 ttaaaattccaaaatccaaaaga 180  Q
    |||||||||||||||||||||||    
T  12931007 ttaaaattccaaaatccaaaaga 12930985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 12935786 - 12935731
Alignment:
Q  125 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12935786 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaattcaaaaga 12935731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 26504850 - 26504895
Alignment:
Q  133 tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 178  Q
    |||||||| |||| | ||||||||||||||||| ||||||||||||    
T  26504850 tcgacgagtttaatggaagtgtaaattaaaatttcaaaatccaaaa 26504895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 51303110 - 51302966
Alignment:
Q  34 tgagtttaatcatcgtaccagtgttaccagtgttctcctccatttaatttacactatactctcgagctccaaccggagctctgataccacttgttgggct 133  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| |    
T  51303110 tgagtttaatcattgtaccagtgttaccaatgttctcttccatttaatttacactataatctcgagctccaactggagctccgataccacttgttgggat 51303011  T
Q  134 cgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 178  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||    
T  51303010 cgacgagcttaatgcaagtgtaaattaaaatttcaaaatccaaaa 51302966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 15290616 - 15290541
Alignment:
Q  103 caaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  15290616 caaccggagctctgataccacttgttgggctcgacgagcttaacgcaattgtaaattaaaatttcaaaatccaaaa 15290541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 68 - 180
Target Start/End: Original strand, 2757156 - 2757268
Alignment:
Q  68 ctcctccatttaatttacactatactctcgagctccaaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattcc 167  Q
    |||||||||||||||||||||||| ||||||||||||||    ||||| ||| ||||||||| | || |||||||||   ||||||||||||||||||||    
T  2757156 ctcctccatttaatttacactataatctcgagctccaacaaatgctcttatatcacttgttgtgttcaacgagcttattacaagtgtaaattaaaattcc 2757255  T
Q  168 aaaatccaaaaga 180  Q
    ||||| |||||||    
T  2757256 aaaattcaaaaga 2757268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 37040426 - 37040479
Alignment:
Q  125 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37040426 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 37040479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 12099361 - 12099306
Alignment:
Q  125 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 180  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  12099361 tgttgggctcgacgagtttaacgcgagtgtaaattaaaattccaaaatccaaaaga 12099306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 12084751 - 12084700
Alignment:
Q  125 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaa 176  Q
    |||||||||| ||||||||||| | || ||||||||||||| ||||||||||    
T  12084751 tgttgggctcaacgagcttaacacgagggtaaattaaaatttcaaaatccaa 12084700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 58 - 177
Target Start/End: Original strand, 38994631 - 38994751
Alignment:
Q  58 taccagtgttctcc-tccatttaatttacactatactctcgagctccaaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaa 156  Q
    |||||||||||||| ||| |||||| ||||  ||| ||||||| | ||||  ||||||||||||||||||||||||| ||||| ||||| || |||||||    
T  38994631 taccagtgttctccctccgtttaatatacataataatctcgagtttcaactagagctctgataccacttgttgggcttgacgatcttaatgctagtgtaa 38994730  T
Q  157 attaaaattccaaaatccaaa 177  Q
    ||||||||||||||| |||||    
T  38994731 attaaaattccaaaacccaaa 38994751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 42910992 - 42911048
Alignment:
Q  124 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 180  Q
    |||||||||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  42910992 ttgttgggctcgacgagcttaacgcaagtggaaattaaaattttaaaatccaaaaga 42911048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 29106878 - 29106931
Alignment:
Q  125 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 178  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  29106878 tgttgggatcgaggagcttaatgcaagtgtaaattaaaattccaaaatccaaaa 29106931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 38997106 - 38997193
Alignment:
Q  93 tctcgagctccaaccggagctctgataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 180  Q
    |||| |||| |||| |||||||| |||| |||||||||| |||| | |||||| ||  |||||||||||||||||| |||||||||||    
T  38997106 tctcaagcttcaactggagctctaatactacttgttgggttcgaagggcttaatgcgggtgtaaattaaaattccagaatccaaaaga 38997193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 34907503 - 34907448
Alignment:
Q  125 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34907503 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 34907448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 8539549 - 8539493
Alignment:
Q  124 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  8539549 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaattctaaaaga 8539493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 2100199 - 2100246
Alignment:
Q  125 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaat 172  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  2100199 tgttgggctcgacgagcttaacacaagtgtaaattaaaattccaaaat 2100246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 426 times since January 2019
Visitors: 3476